ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast77e02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY105945.1| Zea mays PCO115682 mRNA sequence 80 6e-12
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
3dbj|AK105903.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
4dbj|AK105778.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
5dbj|AK104623.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
6dbj|AK071989.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
7dbj|AK061322.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
8emb|AL732331.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 52 0.001
9emb|AL606454.3|OSJN00009 Oryza sativa genomic DNA, chromosome 4,... 52 0.001
10ref|XM_474092.1| Oryza sativa (japonica cultivar-group), predic... 48 0.022
11dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 46 0.087
12gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 44 0.35
13gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 42 1.4
14ref|XM_958079.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.4
15ref|XM_330243.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.4
16ref|XM_862060.1| PREDICTED: Canis familiaris hypothetical protei... 42 1.4
17gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 42 1.4
18emb|CR522871.1| Desulfotalea psychrophila LSv54, large plasmid 42 1.4
19emb|BX284745.1|NCB18E6 Neurospora crassa DNA linkage group II BA... 42 1.4
20gb|DQ397621.1| Cenarchaeum symbiosum clone C21E11, complete sequ... 42 1.4
21gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome 42 1.4
22gb|U31090.1|RSU31090 Rhodobacter sphaeroides FliH (fliH) gene, p... 42 1.4
23gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 40 5.4
24gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 5.4
25gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 40 5.4
26gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 40 5.4
27gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 5.4
28gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 40 5.4
29gb|AC120887.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.4
30gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 5.4
31emb|X97201.1|RSFLIIGEN R.sphaeroides fliI gene 40 5.4
32emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genom... 40 5.4
33emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 5.4
34emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete ... 40 5.4
35emb|BX470161.8| Zebrafish DNA sequence from clone RP71-84I2, com... 40 5.4
36gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 5.4
37gb|DQ060507.1| Nelumbo nucifera polyphenol oxidase 4-like mRNA, ... 40 5.4
38dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
39gb|AF222753.1|AF222753 Bradyrhizobium sp. WM9 nodulation region 1 40 5.4
40dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 5.4
41dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 5.4
42dbj|AK062389.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.4
43gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 5.4
44dbj|D13252.1|SMAASPA Serratia marcescens aspA gene for aspartase... 40 5.4
45gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.4 
>gb|AY105945.1| Zea mays PCO115682 mRNA sequence
          Length = 947

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 55/60 (91%)
 Strand = Plus / Plus

                                                                      
Query: 16 gcaatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctcg 75
          |||||||||||||| ||| |||||||||||||||| || |||||||||| ||||||||||
Sbjct: 33 gcaatggagtccaccaagctctccgcgctgctggtgctcgccatgctcgcgctctcctcg 92
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                          
Query: 17       caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 74
                ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 32828010 caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 32827953
to top
>dbj|AK105903.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-F11, full
           insert sequence
          Length = 1255

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 17  caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 74
           ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 59  caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 116
to top
>dbj|AK105778.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-F10, full
           insert sequence
          Length = 1242

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 17  caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 74
           ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 59  caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 116
to top
>dbj|AK104623.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-H11, full
           insert sequence
          Length = 1251

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 17  caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 74
           ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 55  caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 112
to top
>dbj|AK071989.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094H13, full
           insert sequence
          Length = 1272

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 17  caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 74
           ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 63  caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 120
to top
>dbj|AK061322.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-F03, full
           insert sequence
          Length = 1257

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 17  caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 74
           ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 61  caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 118
to top
>emb|AL732331.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0413E07, complete
             sequence
          Length = 76546

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                       
Query: 17    caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 74
             ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 23245 caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 23188
to top
>emb|AL606454.3|OSJN00009 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0033G05,
             complete sequence
          Length = 142556

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                       
Query: 17    caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 74
             ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 90297 caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 90240
to top
>ref|XM_474092.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 783

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                  
Query: 19 atggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 74
          ||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 1  atggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 56
to top
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 46.1 bits (23), Expect = 0.087
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                              
Query: 258     gaccgcgggcggcgtcgtcggcaaggtcacc 288
               |||| |||||||| |||||||||||||||||
Sbjct: 5244989 gacctcgggcggcctcgtcggcaaggtcacc 5244959



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 138     cacgccctcgggcggcggca 157
               ||||||||||||||||||||
Sbjct: 7955812 cacgccctcgggcggcggca 7955831
to top
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 312     tgccgttggcggcgtcgccggc 333
               ||||||||||||||||||||||
Sbjct: 4638267 tgccgttggcggcgtcgccggc 4638246
to top
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 120     tggcacgccgtcgagcggcacgccctcgg 148
               ||||| ||||||||||||| |||||||||
Sbjct: 1763519 tggcaggccgtcgagcggcgcgccctcgg 1763491
to top
>ref|XM_958079.1| Neurospora crassa OR74A hypothetical protein (NCU09594.1) partial
            mRNA
          Length = 1932

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 260  ccgcgggcggcgtcgtcggca 280
            |||||||||||||||||||||
Sbjct: 1241 ccgcgggcggcgtcgtcggca 1221
to top
>ref|XM_330243.1| Neurospora crassa OR74A hypothetical protein (NCU09594.1) partial
            mRNA
          Length = 1932

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 260  ccgcgggcggcgtcgtcggca 280
            |||||||||||||||||||||
Sbjct: 1241 ccgcgggcggcgtcgtcggca 1221
to top
>ref|XM_862060.1| PREDICTED: Canis familiaris hypothetical protein LOC610656
           (LOC610656), mRNA
          Length = 1146

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 249 cgccgccccgaccgcgggcgg 269
           |||||||||||||||||||||
Sbjct: 306 cgccgccccgaccgcgggcgg 286
to top
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 313    gccgttggcggcgtcgccggcaaag 337
              |||| ||||||||||||||||||||
Sbjct: 956052 gccggtggcggcgtcgccggcaaag 956076
to top
>emb|CR522871.1| Desulfotalea psychrophila LSv54, large plasmid
          Length = 121587

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 44     tgctggttctggccatgctcg 64
              |||||||||||||||||||||
Sbjct: 104132 tgctggttctggccatgctcg 104112
to top
>emb|BX284745.1|NCB18E6 Neurospora crassa DNA linkage group II BAC clone B18E6
          Length = 68593

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 260   ccgcgggcggcgtcgtcggca 280
             |||||||||||||||||||||
Sbjct: 58602 ccgcgggcggcgtcgtcggca 58582
to top
>gb|DQ397621.1| Cenarchaeum symbiosum clone C21E11, complete sequence
          Length = 41700

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 7     gtggttgctgcaatggagtcc 27
             |||||||||||||||||||||
Sbjct: 13074 gtggttgctgcaatggagtcc 13094
to top
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 260     ccgcgggcggcgtcgtcggca 280
               |||||||||||||||||||||
Sbjct: 1884607 ccgcgggcggcgtcgtcggca 1884587
to top
>gb|U31090.1|RSU31090 Rhodobacter sphaeroides FliH (fliH) gene, partial cds, FliI (fliI)
           and FliJ (fliJ) genes, complete cds
          Length = 2190

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 120 tggcacgccgtcgagcggcacgccctcgg 148
           ||||| ||||||||||||| |||||||||
Sbjct: 806 tggcaggccgtcgagcggcgcgccctcgg 778
to top
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 312     tgccgttggcggcgtcgccggcaa 335
               ||||||||||||| ||||||||||
Sbjct: 3046817 tgccgttggcggcctcgccggcaa 3046840
to top
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 126     gccgtcgagcggcacgccct 145
               ||||||||||||||||||||
Sbjct: 2793585 gccgtcgagcggcacgccct 2793604
to top
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 143     cctcgggcggcggcatcagc 162
               ||||||||||||||||||||
Sbjct: 1928034 cctcgggcggcggcatcagc 1928015
to top
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 168    cccggtcatcggcgtcgtcg 187
              ||||||||||||||||||||
Sbjct: 625982 cccggtcatcggcgtcgtcg 626001
to top
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 126     gccgtcgagcggcacgccct 145
               ||||||||||||||||||||
Sbjct: 4021080 gccgtcgagcggcacgccct 4021099
to top
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 362    tcggcaccgtcggcggcgtggccg 385
              |||| |||||||||||||||||||
Sbjct: 629558 tcgggaccgtcggcggcgtggccg 629581
to top
>gb|AC120887.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0088K21, complete sequence
          Length = 153239

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 200    ctccggtcatcggcgtcgtc 219
              ||||||||||||||||||||
Sbjct: 101127 ctccggtcatcggcgtcgtc 101108
to top
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 202     ccggtcatcggcgtcgtcgg 221
               ||||||||||||||||||||
Sbjct: 3541023 ccggtcatcggcgtcgtcgg 3541042



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 169     ccggtcatcggcgtcgtcgg 188
               ||||||||||||||||||||
Sbjct: 3541023 ccggtcatcggcgtcgtcgg 3541042
to top
>emb|X97201.1|RSFLIIGEN R.sphaeroides fliI gene
          Length = 1341

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 121 ggcacgccgtcgagcggcacgccctcgg 148
           |||| ||||||||||||| |||||||||
Sbjct: 365 ggcaggccgtcgagcggcgcgccctcgg 338
to top
>emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genome; segment 1/16
          Length = 349315

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 368    ccgtcggcggcgtggccggc 387
              ||||||||||||||||||||
Sbjct: 125160 ccgtcggcggcgtggccggc 125179
to top
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 126     gccgtcgagcggcacgccct 145
               ||||||||||||||||||||
Sbjct: 3727689 gccgtcgagcggcacgccct 3727708
to top
>emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete genome; segment 19/29
          Length = 311000

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 373    ggcggcgtggccggcaaagtcacccccg 400
              ||||||||||||||||| |||| |||||
Sbjct: 217166 ggcggcgtggccggcaacgtcatccccg 217193
to top
>emb|BX470161.8| Zebrafish DNA sequence from clone RP71-84I2, complete sequence
          Length = 197615

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 265   ggcggcgtcgtcggcaaggt 284
             ||||||||||||||||||||
Sbjct: 34384 ggcggcgtcgtcggcaaggt 34403
to top
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 261     cgcgggcggcgtcgtcggcaaggt 284
               |||||||| |||||||||||||||
Sbjct: 4309839 cgcgggcgccgtcgtcggcaaggt 4309862
to top
>gb|DQ060507.1| Nelumbo nucifera polyphenol oxidase 4-like mRNA, partial sequence
          Length = 1004

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 380 tggccggcaaagtcacccccgccg 403
           ||||||||||||||| ||||||||
Sbjct: 133 tggccggcaaagtcatccccgccg 110
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 200      ctccggtcatcggcgtcgtc 219
                ||||||||||||||||||||
Sbjct: 22841410 ctccggtcatcggcgtcgtc 22841391
to top
>gb|AF222753.1|AF222753 Bradyrhizobium sp. WM9 nodulation region 1
          Length = 33038

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 312  tgccgttggcggcgtcgccggcaa 335
            ||||||| ||||||||||||||||
Sbjct: 3869 tgccgttcgcggcgtcgccggcaa 3892
to top
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 312     tgccgttggcggcgtcgccggcaa 335
               |||||| |||||||||||||||||
Sbjct: 3391888 tgccgtgggcggcgtcgccggcaa 3391865
to top
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 360     ggtcggcaccgtcggcggcg 379
               ||||||||||||||||||||
Sbjct: 4635525 ggtcggcaccgtcggcggcg 4635544
to top
>dbj|AK062389.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-102-C07, full
           insert sequence
          Length = 745

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 177 cggcgtcgtcggtggcaccgtcactccg 204
           |||||||| ||| |||||||||||||||
Sbjct: 427 cggcgtcgacggcggcaccgtcactccg 400



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 210 cggcgtcgtcggtggcaccgtcactccg 237
           |||||||| ||| |||||||||||||||
Sbjct: 427 cggcgtcgacggcggcaccgtcactccg 400
to top
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 126     gccgtcgagcggcacgccct 145
               ||||||||||||||||||||
Sbjct: 3420385 gccgtcgagcggcacgccct 3420404



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 261     cgcgggcggcgtcgtcggca 280
               ||||||||||||||||||||
Sbjct: 3007250 cgcgggcggcgtcgtcggca 3007231
to top
>dbj|D13252.1|SMAASPA Serratia marcescens aspA gene for aspartase, complete cds
          Length = 2867

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 312 tgccgttggcggcgtcgccg 331
           ||||||||||||||||||||
Sbjct: 21  tgccgttggcggcgtcgccg 40
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 200      ctccggtcatcggcgtcgtc 219
                ||||||||||||||||||||
Sbjct: 23151320 ctccggtcatcggcgtcgtc 23151301


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,345,760
Number of Sequences: 3902068
Number of extensions: 2345760
Number of successful extensions: 54788
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51735
Number of HSP's gapped (non-prelim): 3053
length of query: 403
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 381
effective length of database: 17,147,199,772
effective search space: 6533083113132
effective search space used: 6533083113132
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top