ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast77d12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC165972.4| Mus musculus BAC clone RP23-87D12 from chromosome 17, complete sequence Length = 199737 Score = 38.2 bits (19), Expect = 5.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 53 ctaaagccagcgggagagcaagg 75 |||||||||||||||||| |||| Sbjct: 149188 ctaaagccagcgggagaggaagg 149210
>gb|AY685231.1| Neurospora crassa F-box/WD-40 repeat-containing protein (fwd-1) mRNA, complete cds Length = 3033 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 60 cagcgggagagcaaggcga 78 ||||||||||||||||||| Sbjct: 837 cagcgggagagcaaggcga 855
>ref|XM_323892.1| Neurospora crassa OR74A hypothetical protein (NCU04540.1) partial mRNA Length = 3033 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 60 cagcgggagagcaaggcga 78 ||||||||||||||||||| Sbjct: 837 cagcgggagagcaaggcga 855
>ref|XM_950887.1| Neurospora crassa OR74A hypothetical protein (NCU04540.1) partial mRNA Length = 3033 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 60 cagcgggagagcaaggcga 78 ||||||||||||||||||| Sbjct: 837 cagcgggagagcaaggcga 855
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 73 aggcgatgtcaatggcgga 91 ||||||||||||||||||| Sbjct: 3946898 aggcgatgtcaatggcgga 3946916
>gb|AC164983.2| Mus musculus BAC clone RP23-16J24 from chromosome 17, complete sequence Length = 224370 Score = 38.2 bits (19), Expect = 5.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 53 ctaaagccagcgggagagcaagg 75 |||||||||||||||||| |||| Sbjct: 217279 ctaaagccagcgggagaggaagg 217301 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 588,443 Number of Sequences: 3902068 Number of extensions: 588443 Number of successful extensions: 34138 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 34117 Number of HSP's gapped (non-prelim): 21 length of query: 122 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 101 effective length of database: 17,151,101,840 effective search space: 1732261285840 effective search space used: 1732261285840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
