ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bast77d02 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 125 bits (63), Expect = 1e-25 Identities = 108/123 (87%) Strand = Plus / Plus Query: 85 cggcggctgcgtccacgtcctcatgctcccgtacccgagccagggccacatcaaccctat 144 ||||||| || |||||||| || ||||||||||||||||||| ||||||||||| || || Sbjct: 19927187 cggcggcggcatccacgtcgtcttgctcccgtacccgagccaaggccacatcaatccgat 19927246 Query: 145 cctccagtttggcaagcgcctcgcctcccacgccggcgtccgctgcacgctcgccgtcac 204 ||||||||| ||||||||||||||| ||| | ||||||||| ||||| |||||||| || Sbjct: 19927247 cctccagttcggcaagcgcctcgccggccatggcggcgtccggtgcaccctcgccgtgac 19927306 Query: 205 gcg 207 ||| Sbjct: 19927307 gcg 19927309 Score = 83.8 bits (42), Expect = 5e-13 Identities = 78/90 (86%) Strand = Plus / Plus Query: 128 ggccacatcaaccctatcctccagtttggcaagcgcctcgcctcccacgccggcgtccgc 187 |||||| ||||||| | |||||||| ||||||||||||||| ||||| | ||||||| Sbjct: 19933658 ggccacgtcaacccgctgctccagttcggcaagcgcctcgccgcccaccgccgcgtccgg 19933717 Query: 188 tgcacgctcgccgtcacgcgctacctgctc 217 ||||| |||||||||||||||| ||||||| Sbjct: 19933718 tgcaccctcgccgtcacgcgctccctgctc 19933747 Score = 77.8 bits (39), Expect = 3e-11 Identities = 78/89 (87%), Gaps = 4/89 (4%) Strand = Plus / Plus Query: 386 agggccggcccgtgggcgccgtggtgtacgacgcattcctgcagccgtgggcgccgcgcg 445 |||||||||||||| ||||||||||||||||||| ||||| |||||||||| ||| || Sbjct: 19933929 agggccggcccgtgcgcgccgtggtgtacgacgcgttcct---gccgtgggcggcgcccg 19933985 Query: 446 tggcccggcg-cacggcgccgcgtgcgcg 473 |||| ||||| |||||||| |||||||| Sbjct: 19933986 tggcgcggcgccacggcgcgtcgtgcgcg 19934014 Score = 71.9 bits (36), Expect = 2e-09 Identities = 72/84 (85%) Strand = Plus / Plus Query: 124 ccagggccacatcaaccctatcctccagtttggcaagcgcctcgcctcccacgccggcgt 183 |||||||||||||||||| | |||||||| ||||||||||||||| ||| | |||||| Sbjct: 19919423 ccagggccacatcaacccggtgctccagttcggcaagcgcctcgccggccatgacggcgt 19919482 Query: 184 ccgctgcacgctcgccgtcacgcg 207 ||| ||||| ||||||| ||||| Sbjct: 19919483 ccggtgcaccgtcgccgtgacgcg 19919506 Score = 65.9 bits (33), Expect = 1e-07 Identities = 67/76 (88%), Gaps = 3/76 (3%) Strand = Plus / Plus Query: 374 ccgaggcggagaagggccggcccgtgggcgccgtggtgtacgacgcattcctgcagccgt 433 ||||||||||| |||||||||| |||| ||| |||||||||||| | |||||| ||| | Sbjct: 19927474 ccgaggcggagcagggccggccggtggacgcggtggtgtacgactcgttcctg-agc--t 19927530 Query: 434 gggcgccgcgcgtggc 449 |||||||||||||||| Sbjct: 19927531 gggcgccgcgcgtggc 19927546 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 113 ccgtacccgagccagggccacatcaaccctatcctccagtttggcaagcgcctcgc 168 |||||||| |||||||||||| || |||| || |||||||| | |||||||||||| Sbjct: 19901741 ccgtacccaagccagggccacgtccacccgatgctccagttcgccaagcgcctcgc 19901796
>dbj|AP006173.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0217C03 Length = 58309 Score = 125 bits (63), Expect = 1e-25 Identities = 108/123 (87%) Strand = Plus / Plus Query: 85 cggcggctgcgtccacgtcctcatgctcccgtacccgagccagggccacatcaaccctat 144 ||||||| || |||||||| || ||||||||||||||||||| ||||||||||| || || Sbjct: 34273 cggcggcggcatccacgtcgtcttgctcccgtacccgagccaaggccacatcaatccgat 34332 Query: 145 cctccagtttggcaagcgcctcgcctcccacgccggcgtccgctgcacgctcgccgtcac 204 ||||||||| ||||||||||||||| ||| | ||||||||| ||||| |||||||| || Sbjct: 34333 cctccagttcggcaagcgcctcgccggccatggcggcgtccggtgcaccctcgccgtgac 34392 Query: 205 gcg 207 ||| Sbjct: 34393 gcg 34395 Score = 83.8 bits (42), Expect = 5e-13 Identities = 78/90 (86%) Strand = Plus / Plus Query: 128 ggccacatcaaccctatcctccagtttggcaagcgcctcgcctcccacgccggcgtccgc 187 |||||| ||||||| | |||||||| ||||||||||||||| ||||| | ||||||| Sbjct: 40744 ggccacgtcaacccgctgctccagttcggcaagcgcctcgccgcccaccgccgcgtccgg 40803 Query: 188 tgcacgctcgccgtcacgcgctacctgctc 217 ||||| |||||||||||||||| ||||||| Sbjct: 40804 tgcaccctcgccgtcacgcgctccctgctc 40833 Score = 77.8 bits (39), Expect = 3e-11 Identities = 78/89 (87%), Gaps = 4/89 (4%) Strand = Plus / Plus Query: 386 agggccggcccgtgggcgccgtggtgtacgacgcattcctgcagccgtgggcgccgcgcg 445 |||||||||||||| ||||||||||||||||||| ||||| |||||||||| ||| || Sbjct: 41015 agggccggcccgtgcgcgccgtggtgtacgacgcgttcct---gccgtgggcggcgcccg 41071 Query: 446 tggcccggcg-cacggcgccgcgtgcgcg 473 |||| ||||| |||||||| |||||||| Sbjct: 41072 tggcgcggcgccacggcgcgtcgtgcgcg 41100 Score = 71.9 bits (36), Expect = 2e-09 Identities = 72/84 (85%) Strand = Plus / Plus Query: 124 ccagggccacatcaaccctatcctccagtttggcaagcgcctcgcctcccacgccggcgt 183 |||||||||||||||||| | |||||||| ||||||||||||||| ||| | |||||| Sbjct: 26509 ccagggccacatcaacccggtgctccagttcggcaagcgcctcgccggccatgacggcgt 26568 Query: 184 ccgctgcacgctcgccgtcacgcg 207 ||| ||||| ||||||| ||||| Sbjct: 26569 ccggtgcaccgtcgccgtgacgcg 26592 Score = 65.9 bits (33), Expect = 1e-07 Identities = 67/76 (88%), Gaps = 3/76 (3%) Strand = Plus / Plus Query: 374 ccgaggcggagaagggccggcccgtgggcgccgtggtgtacgacgcattcctgcagccgt 433 ||||||||||| |||||||||| |||| ||| |||||||||||| | |||||| ||| | Sbjct: 34560 ccgaggcggagcagggccggccggtggacgcggtggtgtacgactcgttcctg-agc--t 34616 Query: 434 gggcgccgcgcgtggc 449 |||||||||||||||| Sbjct: 34617 gggcgccgcgcgtggc 34632 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 113 ccgtacccgagccagggccacatcaaccctatcctccagtttggcaagcgcctcgc 168 |||||||| |||||||||||| || |||| || |||||||| | |||||||||||| Sbjct: 8827 ccgtacccaagccagggccacgtccacccgatgctccagttcgccaagcgcctcgc 8882
>dbj|AP006525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0498F03 Length = 54025 Score = 125 bits (63), Expect = 1e-25 Identities = 108/123 (87%) Strand = Plus / Plus Query: 85 cggcggctgcgtccacgtcctcatgctcccgtacccgagccagggccacatcaaccctat 144 ||||||| || |||||||| || ||||||||||||||||||| ||||||||||| || || Sbjct: 1335 cggcggcggcatccacgtcgtcttgctcccgtacccgagccaaggccacatcaatccgat 1394 Query: 145 cctccagtttggcaagcgcctcgcctcccacgccggcgtccgctgcacgctcgccgtcac 204 ||||||||| ||||||||||||||| ||| | ||||||||| ||||| |||||||| || Sbjct: 1395 cctccagttcggcaagcgcctcgccggccatggcggcgtccggtgcaccctcgccgtgac 1454 Query: 205 gcg 207 ||| Sbjct: 1455 gcg 1457 Score = 83.8 bits (42), Expect = 5e-13 Identities = 78/90 (86%) Strand = Plus / Plus Query: 128 ggccacatcaaccctatcctccagtttggcaagcgcctcgcctcccacgccggcgtccgc 187 |||||| ||||||| | |||||||| ||||||||||||||| ||||| | ||||||| Sbjct: 7806 ggccacgtcaacccgctgctccagttcggcaagcgcctcgccgcccaccgccgcgtccgg 7865 Query: 188 tgcacgctcgccgtcacgcgctacctgctc 217 ||||| |||||||||||||||| ||||||| Sbjct: 7866 tgcaccctcgccgtcacgcgctccctgctc 7895 Score = 77.8 bits (39), Expect = 3e-11 Identities = 78/89 (87%), Gaps = 4/89 (4%) Strand = Plus / Plus Query: 386 agggccggcccgtgggcgccgtggtgtacgacgcattcctgcagccgtgggcgccgcgcg 445 |||||||||||||| ||||||||||||||||||| ||||| |||||||||| ||| || Sbjct: 8077 agggccggcccgtgcgcgccgtggtgtacgacgcgttcct---gccgtgggcggcgcccg 8133 Query: 446 tggcccggcg-cacggcgccgcgtgcgcg 473 |||| ||||| |||||||| |||||||| Sbjct: 8134 tggcgcggcgccacggcgcgtcgtgcgcg 8162 Score = 65.9 bits (33), Expect = 1e-07 Identities = 67/76 (88%), Gaps = 3/76 (3%) Strand = Plus / Plus Query: 374 ccgaggcggagaagggccggcccgtgggcgccgtggtgtacgacgcattcctgcagccgt 433 ||||||||||| |||||||||| |||| ||| |||||||||||| | |||||| ||| | Sbjct: 1622 ccgaggcggagcagggccggccggtggacgcggtggtgtacgactcgttcctg-agc--t 1678 Query: 434 gggcgccgcgcgtggc 449 |||||||||||||||| Sbjct: 1679 gggcgccgcgcgtggc 1694
>dbj|AK121725.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033082A13, full insert sequence Length = 1654 Score = 125 bits (63), Expect = 1e-25 Identities = 108/123 (87%) Strand = Plus / Plus Query: 85 cggcggctgcgtccacgtcctcatgctcccgtacccgagccagggccacatcaaccctat 144 ||||||| || |||||||| || ||||||||||||||||||| ||||||||||| || || Sbjct: 75 cggcggcggcatccacgtcgtcttgctcccgtacccgagccaaggccacatcaatccgat 134 Query: 145 cctccagtttggcaagcgcctcgcctcccacgccggcgtccgctgcacgctcgccgtcac 204 ||||||||| ||||||||||||||| ||| | ||||||||| ||||| |||||||| || Sbjct: 135 cctccagttcggcaagcgcctcgccggccatggcggcgtccggtgcaccctcgccgtgac 194 Query: 205 gcg 207 ||| Sbjct: 195 gcg 197 Score = 65.9 bits (33), Expect = 1e-07 Identities = 67/76 (88%), Gaps = 3/76 (3%) Strand = Plus / Plus Query: 374 ccgaggcggagaagggccggcccgtgggcgccgtggtgtacgacgcattcctgcagccgt 433 ||||||||||| |||||||||| |||| ||| |||||||||||| | |||||| ||| | Sbjct: 362 ccgaggcggagcagggccggccggtggacgcggtggtgtacgactcgttcctg-agc--t 418 Query: 434 gggcgccgcgcgtggc 449 |||||||||||||||| Sbjct: 419 gggcgccgcgcgtggc 434
>dbj|AK064395.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-G04, full insert sequence Length = 1726 Score = 125 bits (63), Expect = 1e-25 Identities = 108/123 (87%) Strand = Plus / Plus Query: 85 cggcggctgcgtccacgtcctcatgctcccgtacccgagccagggccacatcaaccctat 144 ||||||| || |||||||| || ||||||||||||||||||| ||||||||||| || || Sbjct: 78 cggcggcggcatccacgtcgtcttgctcccgtacccgagccaaggccacatcaatccgat 137 Query: 145 cctccagtttggcaagcgcctcgcctcccacgccggcgtccgctgcacgctcgccgtcac 204 ||||||||| ||||||||||||||| ||| | ||||||||| ||||| |||||||| || Sbjct: 138 cctccagttaggcaagcgcctcgccggccatggcggcgtccggtgcaccctcgccgtgac 197 Query: 205 gcg 207 ||| Sbjct: 198 gcg 200 Score = 65.9 bits (33), Expect = 1e-07 Identities = 67/76 (88%), Gaps = 3/76 (3%) Strand = Plus / Plus Query: 374 ccgaggcggagaagggccggcccgtgggcgccgtggtgtacgacgcattcctgcagccgt 433 ||||||||||| |||||||||| |||| ||| |||||||||||| | |||||| ||| | Sbjct: 365 ccgaggcggagcagggccggccggtggacgcggtggtgtacgactcgttcctg-agc--t 421 Query: 434 gggcgccgcgcgtggc 449 |||||||||||||||| Sbjct: 422 gggcgccgcgcgtggc 437
>dbj|AK065112.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001O03, full insert sequence Length = 1843 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 113 ccgtacccgagccagggccacatcaaccctatcctccagtttggcaagcgcctcgc 168 |||||||| |||||||||||| || |||| || |||||||| | |||||||||||| Sbjct: 102 ccgtacccaagccagggccacgtccacccgatgctccagttcgccaagcgcctcgc 157
>gb|AY615265.1| Arachis villosulicarpa small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence Length = 589 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 374 ccgaggcggagaagggccggcc 395 |||||||||||||||||||||| Sbjct: 52 ccgaggcggagaagggccggcc 73
>gb|AY615246.1| Arachis lutescens small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence Length = 589 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 374 ccgaggcggagaagggccggcc 395 |||||||||||||||||||||| Sbjct: 52 ccgaggcggagaagggccggcc 73
>ref|XM_479983.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1164 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 298 gccgccggagacgtcgccgcg 318 ||||||||||||||||||||| Sbjct: 422 gccgccggagacgtcgccgcg 402
>ref|XM_479982.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1156 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 298 gccgccggagacgtcgccgcg 318 ||||||||||||||||||||| Sbjct: 360 gccgccggagacgtcgccgcg 340
>ref|XM_479981.1| Oryza sativa (japonica cultivar-group), mRNA Length = 876 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 298 gccgccggagacgtcgccgcg 318 ||||||||||||||||||||| Sbjct: 80 gccgccggagacgtcgccgcg 100
>ref|XM_479980.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1199 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 298 gccgccggagacgtcgccgcg 318 ||||||||||||||||||||| Sbjct: 410 gccgccggagacgtcgccgcg 390
>ref|XM_479978.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1125 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 298 gccgccggagacgtcgccgcg 318 ||||||||||||||||||||| Sbjct: 395 gccgccggagacgtcgccgcg 375
>ref|NM_185146.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1413 Score = 42.1 bits (21), Expect = 1.6 Identities = 39/45 (86%) Strand = Plus / Plus Query: 97 ccacgtcctcatgctcccgtacccgagccagggccacatcaaccc 141 |||||||||| || ||||| |||| |||||||||||||||||| Sbjct: 69 ccacgtcctcctgttcccgctcccgtaccagggccacatcaaccc 113
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.6 Identities = 39/45 (86%) Strand = Plus / Plus Query: 97 ccacgtcctcatgctcccgtacccgagccagggccacatcaaccc 141 |||||||||| || ||||| |||| |||||||||||||||||| Sbjct: 34333124 ccacgtcctcctgttcccgctcccgtaccagggccacatcaaccc 34333168
>gb|AF311908.1| Oryza sativa 33-kDa secretory protein (m33) gene, complete cds Length = 3389 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 298 gccgccggagacgtcgccgcg 318 ||||||||||||||||||||| Sbjct: 1394 gccgccggagacgtcgccgcg 1374
>emb|AJ250094.1|BBR250094 Bordetella bronchiseptica partial prn gene for pertactin (P.68), isolate SEI, 485BP Length = 485 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 270 cggcttcgatcgcggcggcttcggt 294 ||||||||||| ||||||||||||| Sbjct: 229 cggcttcgatcccggcggcttcggt 253
>gb|AC007638.8| Homo sapiens chromosome 17, clone RP11-515O17, complete sequence Length = 182051 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 51 aataactagccatggcagctc 71 ||||||||||||||||||||| Sbjct: 101242 aataactagccatggcagctc 101222
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 298 gccgccggagacgtcgccgcg 318 ||||||||||||||||||||| Sbjct: 2060510 gccgccggagacgtcgccgcg 2060490 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 298 gccgccggagacgtcgccgcg 318 ||||||||||||||||||||| Sbjct: 2058039 gccgccggagacgtcgccgcg 2058059 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 298 gccgccggagacgtcgccgcg 318 ||||||||||||||||||||| Sbjct: 2054490 gccgccggagacgtcgccgcg 2054510 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 298 gccgccggagacgtcgccgcg 318 ||||||||||||||||||||| Sbjct: 2049092 gccgccggagacgtcgccgcg 2049112
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 448 gcccggcgcacggcgccgcgt 468 ||||||||||||||||||||| Sbjct: 16113036 gcccggcgcacggcgccgcgt 16113016
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.6 Identities = 39/45 (86%) Strand = Plus / Plus Query: 97 ccacgtcctcatgctcccgtacccgagccagggccacatcaaccc 141 |||||||||| || ||||| |||| |||||||||||||||||| Sbjct: 34423596 ccacgtcctcctgttcccgctcccgtaccagggccacatcaaccc 34423640
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 276 cgatcgcggcggcttcggtga 296 ||||||||||||||||||||| Sbjct: 2776821 cgatcgcggcggcttcggtga 2776801
>gb|AC093018.4| Oryza sativa chromosome 3 BAC OSJNBb0081B07 genomic sequence, complete sequence Length = 143205 Score = 42.1 bits (21), Expect = 1.6 Identities = 39/45 (86%) Strand = Plus / Minus Query: 97 ccacgtcctcatgctcccgtacccgagccagggccacatcaaccc 141 |||||||||| || ||||| |||| |||||||||||||||||| Sbjct: 1874 ccacgtcctcctgttcccgctcccgtaccagggccacatcaaccc 1830
>dbj|AP003512.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0618D11 Length = 150103 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 448 gcccggcgcacggcgccgcgt 468 ||||||||||||||||||||| Sbjct: 141765 gcccggcgcacggcgccgcgt 141745
>dbj|AP004681.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0040M10 Length = 162790 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 448 gcccggcgcacggcgccgcgt 468 ||||||||||||||||||||| Sbjct: 17829 gcccggcgcacggcgccgcgt 17809
>dbj|AP003896.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1613_G04 Length = 135357 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 298 gccgccggagacgtcgccgcg 318 ||||||||||||||||||||| Sbjct: 54040 gccgccggagacgtcgccgcg 54020 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 298 gccgccggagacgtcgccgcg 318 ||||||||||||||||||||| Sbjct: 51569 gccgccggagacgtcgccgcg 51589 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 298 gccgccggagacgtcgccgcg 318 ||||||||||||||||||||| Sbjct: 48020 gccgccggagacgtcgccgcg 48040 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 298 gccgccggagacgtcgccgcg 318 ||||||||||||||||||||| Sbjct: 42622 gccgccggagacgtcgccgcg 42642
>dbj|AP005620.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0680F05 Length = 185495 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 298 gccgccggagacgtcgccgcg 318 ||||||||||||||||||||| Sbjct: 183237 gccgccggagacgtcgccgcg 183257 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 298 gccgccggagacgtcgccgcg 318 ||||||||||||||||||||| Sbjct: 179688 gccgccggagacgtcgccgcg 179708 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 298 gccgccggagacgtcgccgcg 318 ||||||||||||||||||||| Sbjct: 174290 gccgccggagacgtcgccgcg 174310
>dbj|AK111343.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-181-F10, full insert sequence Length = 876 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 298 gccgccggagacgtcgccgcg 318 ||||||||||||||||||||| Sbjct: 80 gccgccggagacgtcgccgcg 100
>ref|XM_312809.2| Anopheles gambiae str. PEST ENSANGP00000003195 (ENSANGG00000002584), partial mRNA Length = 1065 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 360 cgagctgctgcggtccgaggc 380 ||||||||||||||||||||| Sbjct: 391 cgagctgctgcggtccgaggc 371
>dbj|AK107939.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-135-A11, full insert sequence Length = 622 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 298 gccgccggagacgtcgccgcg 318 ||||||||||||||||||||| Sbjct: 65 gccgccggagacgtcgccgcg 85
>dbj|AK073888.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033075I11, full insert sequence Length = 1156 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 298 gccgccggagacgtcgccgcg 318 ||||||||||||||||||||| Sbjct: 360 gccgccggagacgtcgccgcg 340
>dbj|AK063306.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-F10, full insert sequence Length = 1164 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 298 gccgccggagacgtcgccgcg 318 ||||||||||||||||||||| Sbjct: 422 gccgccggagacgtcgccgcg 402
>dbj|AK061187.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-E07, full insert sequence Length = 1199 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 298 gccgccggagacgtcgccgcg 318 ||||||||||||||||||||| Sbjct: 410 gccgccggagacgtcgccgcg 390
>dbj|AK059618.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-G10, full insert sequence Length = 1125 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 298 gccgccggagacgtcgccgcg 318 ||||||||||||||||||||| Sbjct: 395 gccgccggagacgtcgccgcg 375
>gb|AF097724.1|AF097724 Oryza sativa 33-kDa secretory protein mRNA, complete cds Length = 1179 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 298 gccgccggagacgtcgccgcg 318 ||||||||||||||||||||| Sbjct: 341 gccgccggagacgtcgccgcg 321
>gb|DQ141762.1| Bordetella bronchiseptica strain B2492 pertactin gene, partial cds Length = 2054 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 270 cggcttcgatcgcggcggcttcggt 294 ||||||||||| ||||||||||||| Sbjct: 741 cggcttcgatcccggcggcttcggt 765
>gb|DQ141732.1| Bordetella bronchiseptica strain B0259 pertactin gene, partial cds Length = 2078 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 270 cggcttcgatcgcggcggcttcggt 294 ||||||||||| ||||||||||||| Sbjct: 756 cggcttcgatcccggcggcttcggt 780
>gb|AF093570.1|AF093570 Oryza sativa 33 kDa secretory protein mRNA, complete cds Length = 1106 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 298 gccgccggagacgtcgccgcg 318 ||||||||||||||||||||| Sbjct: 355 gccgccggagacgtcgccgcg 335
>gb|AF090872.1|AF090872 Oryza sativa 33 kDa secretory protein mRNA, complete cds Length = 1025 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 298 gccgccggagacgtcgccgcg 318 ||||||||||||||||||||| Sbjct: 351 gccgccggagacgtcgccgcg 331
>gb|AC164079.11| Mus musculus chromosome 1, clone RP23-15E12, complete sequence Length = 215135 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 ctacctgctcggccagggcc 227 |||||||||||||||||||| Sbjct: 104025 ctacctgctcggccagggcc 104006
>ref|NM_188119.1| Oryza sativa (japonica cultivar-group), Ozsa8551 predicted mRNA Length = 2388 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 ggcttcggtgaggccgccgg 305 |||||||||||||||||||| Sbjct: 1572 ggcttcggtgaggccgccgg 1553
>ref|XM_474839.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1389 Score = 40.1 bits (20), Expect = 6.4 Identities = 44/52 (84%) Strand = Plus / Plus Query: 125 cagggccacatcaaccctatcctccagtttggcaagcgcctcgcctcccacg 176 ||||||||||| ||||| || |||||||| ||| |||||||||| ||||| Sbjct: 67 cagggccacatgaacccgatgctccagttcggccgccgcctcgcctaccacg 118
>ref|XM_474827.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1008 Score = 40.1 bits (20), Expect = 6.4 Identities = 44/52 (84%) Strand = Plus / Plus Query: 125 cagggccacatcaaccctatcctccagtttggcaagcgcctcgcctcccacg 176 ||||||||||| ||||| || |||||||| ||| |||||||||| ||||| Sbjct: 67 cagggccacatgaacccgatgctccagttcggccgccgcctcgcctaccacg 118
>ref|XM_464540.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1437 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 114 cgtacccgagccagggccacatcaaccc 141 ||||||| ||||||||||||||||||| Sbjct: 29 cgtaccctggccagggccacatcaaccc 56
>ref|XM_516568.1| PREDICTED: Pan troglodytes similar to membrane glycoprotein LRIG1 (LOC460490), mRNA Length = 4314 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 agggccggcccgtgggcgcc 405 |||||||||||||||||||| Sbjct: 1735 agggccggcccgtgggcgcc 1716
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 ccgggcgccgtcacctcgcc 258 |||||||||||||||||||| Sbjct: 1907673 ccgggcgccgtcacctcgcc 1907692
>ref|NM_011086.1| Mus musculus phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III (Pip5k3), mRNA Length = 6297 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 ctacctgctcggccagggcc 227 |||||||||||||||||||| Sbjct: 4768 ctacctgctcggccagggcc 4749
>emb|AL591792.1|SME591792 Sinorhizobium meliloti 1021 complete chromosome; segment 11/12 Length = 333800 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 cggaataactagccatggca 67 |||||||||||||||||||| Sbjct: 209647 cggaataactagccatggca 209666
>emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete genome; segment 20/29 Length = 300100 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 348 ccgcaccgtcgacgagctgctgcg 371 |||||||| ||||||||||||||| Sbjct: 274371 ccgcaccggcgacgagctgctgcg 274348
>emb|AL606590.3|OSJN00031 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0052O21, complete sequence Length = 166475 Score = 40.1 bits (20), Expect = 6.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 125 cagggccacatcaaccctatcctccagtttggcaagcgcctcgcctcccacg 176 ||||||||||| ||||| || |||||||| ||| |||||||||| ||||| Sbjct: 138968 cagggccacatgaacccgatgctccagttcggccgccgcctcgcctaccacg 138917 Score = 40.1 bits (20), Expect = 6.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 125 cagggccacatcaaccctatcctccagtttggcaagcgcctcgcctcccacg 176 ||||||||||| ||||| || |||||||| ||| |||||||||| ||||| Sbjct: 12000 cagggccacatgaacccgatgctccagttcggccgccgcctcgcctaccacg 11949
>emb|AJ580915.1|SPA580915 Streptomyces parvulus Tu4055 cluster for borrelidin biosynthesis Length = 74787 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 tcgacgagctgctgcggtcc 375 |||||||||||||||||||| Sbjct: 18660 tcgacgagctgctgcggtcc 18679
>emb|AJ250093.1|BBR250093 Bordetella bronchiseptica partial prn gene for pertactin (P.68), isolate 286, 483BP Length = 483 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 270 cggcttcgatcgcggcggcttcgg 293 ||||||||||| |||||||||||| Sbjct: 227 cggcttcgatcccggcggcttcgg 250
>gb|AE012380.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 288 of 460 of the complete genome Length = 13945 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 cctgctcggccagggccggg 230 |||||||||||||||||||| Sbjct: 3391 cctgctcggccagggccggg 3372
>gb|AC099665.2| Homo sapiens chromosome 3 clone RP11-15B21, complete sequence Length = 192063 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 386 agggccggcccgtgggcgcc 405 |||||||||||||||||||| Sbjct: 8929 agggccggcccgtgggcgcc 8948
>gb|DP000053.1| Oryctolagus cuniculus target 126 genomic scaffold Length = 470930 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 tagccatggcagctcatgac 76 |||||||||||||||||||| Sbjct: 162353 tagccatggcagctcatgac 162372
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 cctgctcggccagggccggg 230 |||||||||||||||||||| Sbjct: 1737647 cctgctcggccagggccggg 1737666
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 gcacgctcgccgtcacgcgc 208 |||||||||||||||||||| Sbjct: 800735 gcacgctcgccgtcacgcgc 800716
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 125 cagggccacatcaaccctatcctccagtttggcaagcgcctcgcctcccacg 176 ||||||||||| ||||| || |||||||| ||| |||||||||| ||||| Sbjct: 7117777 cagggccacatgaacccgatgctccagttcggccgccgcctcgcctaccacg 7117726 Score = 40.1 bits (20), Expect = 6.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 125 cagggccacatcaaccctatcctccagtttggcaagcgcctcgcctcccacg 176 ||||||||||| ||||| || |||||||| ||| |||||||||| ||||| Sbjct: 6990809 cagggccacatgaacccgatgctccagttcggccgccgcctcgcctaccacg 6990758
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 114 cgtacccgagccagggccacatcaaccc 141 ||||||| ||||||||||||||||||| Sbjct: 5775977 cgtaccctggccagggccacatcaaccc 5776004
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 ggcttcggtgaggccgccgg 305 |||||||||||||||||||| Sbjct: 9864367 ggcttcggtgaggccgccgg 9864348
>gb|AY007274.1|AY007274S1 Bordetella bronchiseptica strain St. Louis pertactin (prn) gene, partial cds Length = 555 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 270 cggcttcgatcgcggcggcttcgg 293 ||||||||||| |||||||||||| Sbjct: 302 cggcttcgatcccggcggcttcgg 325
>gb|AY007272.1|AY007272S1 Bordetella bronchiseptica strain MBORD901 pertactin (prn) gene, partial cds Length = 587 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 270 cggcttcgatcgcggcggcttcgg 293 ||||||||||| |||||||||||| Sbjct: 317 cggcttcgatcccggcggcttcgg 340
>dbj|AK173077.1| Mus musculus mRNA for mKIAA0981 protein Length = 6641 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 ctacctgctcggccagggcc 227 |||||||||||||||||||| Sbjct: 4858 ctacctgctcggccagggcc 4839
>dbj|AP001072.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0025D05 Length = 145684 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 ggcttcggtgaggccgccgg 305 |||||||||||||||||||| Sbjct: 128617 ggcttcggtgaggccgccgg 128598
>dbj|AP000815.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0003H10 Length = 142418 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 ggcttcggtgaggccgccgg 305 |||||||||||||||||||| Sbjct: 133 ggcttcggtgaggccgccgg 114
>dbj|AP005008.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0544H11 Length = 178376 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 114 cgtacccgagccagggccacatcaaccc 141 ||||||| ||||||||||||||||||| Sbjct: 5779 cgtaccctggccagggccacatcaaccc 5806
>dbj|AP004045.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1135_F06 Length = 102230 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 114 cgtacccgagccagggccacatcaaccc 141 ||||||| ||||||||||||||||||| Sbjct: 65491 cgtaccctggccagggccacatcaaccc 65518
>dbj|AK120020.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-186-C02, full insert sequence Length = 1581 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 114 cgtacccgagccagggccacatcaaccc 141 ||||||| ||||||||||||||||||| Sbjct: 1328 cgtaccctggccagggccacatcaaccc 1301
>dbj|AK110892.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-A01, full insert sequence Length = 1521 Score = 40.1 bits (20), Expect = 6.4 Identities = 44/52 (84%) Strand = Plus / Plus Query: 125 cagggccacatcaaccctatcctccagtttggcaagcgcctcgcctcccacg 176 ||||||||||| ||||| || |||||||| ||| |||||||||| ||||| Sbjct: 101 cagggccacatgaacccgatgctccagttcggccgccgcctcgcctaccacg 152
>gb|AC002992.1|AC002992 Homo sapiens chromosome Y, clone 203M13, complete sequence Length = 154848 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 agccatggcagctcatgact 77 |||||||||||||||||||| Sbjct: 114833 agccatggcagctcatgact 114814
>gb|AF102777.1|AF102777 Mus musculus FYVE finger-containing phosphoinositide kinase mRNA, complete cds Length = 6297 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 ctacctgctcggccagggcc 227 |||||||||||||||||||| Sbjct: 4768 ctacctgctcggccagggcc 4749
>dbj|AB091305.2| Burkholderia multivorans rpe, gph, trpE, trpG, trpD, trpC and ung genes, partial and complete cds Length = 7484 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 451 cggcgcacggcgccgcgtgc 470 |||||||||||||||||||| Sbjct: 5142 cggcgcacggcgccgcgtgc 5161
>gb|DQ141725.1| Bordetella bronchiseptica strain B0243 pertactin gene, partial cds Length = 2093 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 270 cggcttcgatcgcggcggcttcgg 293 ||||||||||| |||||||||||| Sbjct: 726 cggcttcgatcccggcggcttcgg 749
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 348 ccgcaccgtcgacgagctgctgcg 371 ||||||||||||||| |||||||| Sbjct: 3347772 ccgcaccgtcgacgacctgctgcg 3347749
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 312 cgccgcgtacctcgcccggc 331 |||||||||||||||||||| Sbjct: 2266370 cgccgcgtacctcgcccggc 2266389 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,432,642 Number of Sequences: 3902068 Number of extensions: 2432642 Number of successful extensions: 55046 Number of sequences better than 10.0: 75 Number of HSP's better than 10.0 without gapping: 75 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53874 Number of HSP's gapped (non-prelim): 1167 length of query: 476 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 454 effective length of database: 17,147,199,772 effective search space: 7784828696488 effective search space used: 7784828696488 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
