ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast77c12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_482927.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1228 Score = 95.6 bits (48), Expect = 1e-16 Identities = 205/257 (79%), Gaps = 8/257 (3%) Strand = Plus / Plus Query: 168 aagttcgacttcacgccgttcctcatccagtacgagagcgggcgggtgcagcggttcatg 227 |||||||||||||||||||| || ||||||||| ||| || |||||||| || | ||| Sbjct: 171 aagttcgacttcacgccgtttctgatccagtacaggagtggcagggtgcagaggctgatg 230 Query: 228 ggcaccagcgtggtgccgccgtccgtggacgcgcgcacgggcgtcgcctccgcggacgtc 287 || || | |||||| ||||||| |||||| |||||| || || | ||| |||||| Sbjct: 231 gggacgacggtggtggcgccgtcgctggacgtgcgcaccggggtggtgtccaaggacgtg 290 Query: 288 gtcgtcgaccagggcacgggcctcgccgtaaggctctaccggccga-gcacccgcggcag 346 |||||||||| | ||||||| ||||| || |||| |||||||||| ||||| | | Sbjct: 291 gtcgtcgaccggagcacggggctcgcggtgcggctgtaccggccgaagcaccgggg---- 346 Query: 347 gcacggcaggctgccagtgctcctctacttccacggnggcgcgttcgtcgtcgagtcggc 406 ||| ||||| || |||||| ||||||||||||| ||||||||||||||||||||||| Sbjct: 347 ---cgggaggctcccggtgctcatctacttccacggcggcgcgttcgtcgtcgagtcggc 403 Query: 407 ctttggccccgtgtacc 423 || | ||| ||||||| Sbjct: 404 gttcgacccggtgtacc 420
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 95.6 bits (48), Expect = 1e-16 Identities = 205/257 (79%), Gaps = 8/257 (3%) Strand = Plus / Minus Query: 168 aagttcgacttcacgccgttcctcatccagtacgagagcgggcgggtgcagcggttcatg 227 |||||||||||||||||||| || ||||||||| ||| || |||||||| || | ||| Sbjct: 23405488 aagttcgacttcacgccgtttctgatccagtacaggagtggcagggtgcagaggctgatg 23405429 Query: 228 ggcaccagcgtggtgccgccgtccgtggacgcgcgcacgggcgtcgcctccgcggacgtc 287 || || | |||||| ||||||| |||||| |||||| || || | ||| |||||| Sbjct: 23405428 gggacgacggtggtggcgccgtcgctggacgtgcgcaccggggtggtgtccaaggacgtg 23405369 Query: 288 gtcgtcgaccagggcacgggcctcgccgtaaggctctaccggccga-gcacccgcggcag 346 |||||||||| | ||||||| ||||| || |||| |||||||||| ||||| | | Sbjct: 23405368 gtcgtcgaccggagcacggggctcgcggtgcggctgtaccggccgaagcaccgggg---- 23405313 Query: 347 gcacggcaggctgccagtgctcctctacttccacggnggcgcgttcgtcgtcgagtcggc 406 ||| ||||| || |||||| ||||||||||||| ||||||||||||||||||||||| Sbjct: 23405312 ---cgggaggctcccggtgctcatctacttccacggcggcgcgttcgtcgtcgagtcggc 23405256 Query: 407 ctttggccccgtgtacc 423 || | ||| ||||||| Sbjct: 23405255 gttcgacccggtgtacc 23405239
>dbj|AP004399.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0451G12 Length = 142182 Score = 95.6 bits (48), Expect = 1e-16 Identities = 205/257 (79%), Gaps = 8/257 (3%) Strand = Plus / Minus Query: 168 aagttcgacttcacgccgttcctcatccagtacgagagcgggcgggtgcagcggttcatg 227 |||||||||||||||||||| || ||||||||| ||| || |||||||| || | ||| Sbjct: 87325 aagttcgacttcacgccgtttctgatccagtacaggagtggcagggtgcagaggctgatg 87266 Query: 228 ggcaccagcgtggtgccgccgtccgtggacgcgcgcacgggcgtcgcctccgcggacgtc 287 || || | |||||| ||||||| |||||| |||||| || || | ||| |||||| Sbjct: 87265 gggacgacggtggtggcgccgtcgctggacgtgcgcaccggggtggtgtccaaggacgtg 87206 Query: 288 gtcgtcgaccagggcacgggcctcgccgtaaggctctaccggccga-gcacccgcggcag 346 |||||||||| | ||||||| ||||| || |||| |||||||||| ||||| | | Sbjct: 87205 gtcgtcgaccggagcacggggctcgcggtgcggctgtaccggccgaagcaccgggg---- 87150 Query: 347 gcacggcaggctgccagtgctcctctacttccacggnggcgcgttcgtcgtcgagtcggc 406 ||| ||||| || |||||| ||||||||||||| ||||||||||||||||||||||| Sbjct: 87149 ---cgggaggctcccggtgctcatctacttccacggcggcgcgttcgtcgtcgagtcggc 87093 Query: 407 ctttggccccgtgtacc 423 || | ||| ||||||| Sbjct: 87092 gttcgacccggtgtacc 87076
>dbj|AK105839.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-F05, full insert sequence Length = 1228 Score = 95.6 bits (48), Expect = 1e-16 Identities = 205/257 (79%), Gaps = 8/257 (3%) Strand = Plus / Plus Query: 168 aagttcgacttcacgccgttcctcatccagtacgagagcgggcgggtgcagcggttcatg 227 |||||||||||||||||||| || ||||||||| ||| || |||||||| || | ||| Sbjct: 171 aagttcgacttcacgccgtttctgatccagtacaggagtggcagggtgcagaggctgatg 230 Query: 228 ggcaccagcgtggtgccgccgtccgtggacgcgcgcacgggcgtcgcctccgcggacgtc 287 || || | |||||| ||||||| |||||| |||||| || || | ||| |||||| Sbjct: 231 gggacgacggtggtggcgccgtcgctggacgtgcgcaccggggtggtgtccaaggacgtg 290 Query: 288 gtcgtcgaccagggcacgggcctcgccgtaaggctctaccggccga-gcacccgcggcag 346 |||||||||| | ||||||| ||||| || |||| |||||||||| ||||| | | Sbjct: 291 gtcgtcgaccggagcacggggctcgcggtgcggctgtaccggccgaagcaccgggg---- 346 Query: 347 gcacggcaggctgccagtgctcctctacttccacggnggcgcgttcgtcgtcgagtcggc 406 ||| ||||| || |||||| ||||||||||||| ||||||||||||||||||||||| Sbjct: 347 ---cgggaggctcccggtgctcatctacttccacggcggcgcgttcgtcgtcgagtcggc 403 Query: 407 ctttggccccgtgtacc 423 || | ||| ||||||| Sbjct: 404 gttcgacccggtgtacc 420
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 65.9 bits (33), Expect = 1e-07 Identities = 90/109 (82%) Strand = Plus / Minus Query: 163 cggtcaagttcgacttcacgccgttcctcatccagtacgagagcgggcgggtgcagcggt 222 ||||||||||||||||| | |||||| | ||| ||||| ||||||| ||||| ||||| Sbjct: 17394714 cggtcaagttcgacttctccccgttcttgatcgagtacaagagcggcagggtgaagcggc 17394655 Query: 223 tcatgggcaccagcgtggtgccgccgtccgtggacgcgcgcacgggcgt 271 ||||||||||| ||||||| || |||| | ||||| || ||| ||||| Sbjct: 17394654 tcatgggcaccgacgtggtggcggcgtcggcggacgtgctcaccggcgt 17394606 Score = 63.9 bits (32), Expect = 4e-07 Identities = 34/35 (97%) Strand = Plus / Minus Query: 372 tacttccacggnggcgcgttcgtcgtcgagtcggc 406 ||||||||||| ||||||||||||||||||||||| Sbjct: 17394508 tacttccacggcggcgcgttcgtcgtcgagtcggc 17394474 Score = 52.0 bits (26), Expect = 0.001 Identities = 31/33 (93%) Strand = Plus / Plus Query: 374 cttccacggnggcgcgttcgtcgtcgagtcggc 406 ||||||||| |||||||||||| |||||||||| Sbjct: 17413056 cttccacggcggcgcgttcgtcatcgagtcggc 17413088 Score = 46.1 bits (23), Expect = 0.092 Identities = 31/34 (91%) Strand = Plus / Plus Query: 374 cttccacggnggcgcgttcgtcgtcgagtcggcc 407 ||||||||| ||||||||| || ||||||||||| Sbjct: 17359917 cttccacggcggcgcgttcttcatcgagtcggcc 17359950
>dbj|AP006849.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0054F02 Length = 180651 Score = 65.9 bits (33), Expect = 1e-07 Identities = 90/109 (82%) Strand = Plus / Minus Query: 163 cggtcaagttcgacttcacgccgttcctcatccagtacgagagcgggcgggtgcagcggt 222 ||||||||||||||||| | |||||| | ||| ||||| ||||||| ||||| ||||| Sbjct: 118627 cggtcaagttcgacttctccccgttcttgatcgagtacaagagcggcagggtgaagcggc 118568 Query: 223 tcatgggcaccagcgtggtgccgccgtccgtggacgcgcgcacgggcgt 271 ||||||||||| ||||||| || |||| | ||||| || ||| ||||| Sbjct: 118567 tcatgggcaccgacgtggtggcggcgtcggcggacgtgctcaccggcgt 118519 Score = 63.9 bits (32), Expect = 4e-07 Identities = 34/35 (97%) Strand = Plus / Minus Query: 372 tacttccacggnggcgcgttcgtcgtcgagtcggc 406 ||||||||||| ||||||||||||||||||||||| Sbjct: 118421 tacttccacggcggcgcgttcgtcgtcgagtcggc 118387 Score = 52.0 bits (26), Expect = 0.001 Identities = 31/33 (93%) Strand = Plus / Plus Query: 374 cttccacggnggcgcgttcgtcgtcgagtcggc 406 ||||||||| |||||||||||| |||||||||| Sbjct: 136969 cttccacggcggcgcgttcgtcatcgagtcggc 137001 Score = 46.1 bits (23), Expect = 0.092 Identities = 31/34 (91%) Strand = Plus / Plus Query: 374 cttccacggnggcgcgttcgtcgtcgagtcggcc 407 ||||||||| ||||||||| || ||||||||||| Sbjct: 83830 cttccacggcggcgcgttcttcatcgagtcggcc 83863
>dbj|AK102328.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033090L22, full insert sequence Length = 1654 Score = 65.9 bits (33), Expect = 1e-07 Identities = 90/109 (82%) Strand = Plus / Plus Query: 163 cggtcaagttcgacttcacgccgttcctcatccagtacgagagcgggcgggtgcagcggt 222 ||||||||||||||||| | |||||| | ||| ||||| ||||||| ||||| ||||| Sbjct: 224 cggtcaagttcgacttctccccgttcttgatcgagtacaagagcggcagggtgaagcggc 283 Query: 223 tcatgggcaccagcgtggtgccgccgtccgtggacgcgcgcacgggcgt 271 ||||||||||| ||||||| || |||| | ||||| || ||| ||||| Sbjct: 284 tcatgggcaccgacgtggtggcggcgtcggcggacgtgctcaccggcgt 332 Score = 63.9 bits (32), Expect = 4e-07 Identities = 34/35 (97%) Strand = Plus / Plus Query: 372 tacttccacggnggcgcgttcgtcgtcgagtcggc 406 ||||||||||| ||||||||||||||||||||||| Sbjct: 430 tacttccacggcggcgcgttcgtcgtcgagtcggc 464
>dbj|AK063400.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-A02, full insert sequence Length = 1245 Score = 65.9 bits (33), Expect = 1e-07 Identities = 90/109 (82%) Strand = Plus / Plus Query: 163 cggtcaagttcgacttcacgccgttcctcatccagtacgagagcgggcgggtgcagcggt 222 ||||||||||||||||| | |||||| | ||| ||||| ||||||| ||||| ||||| Sbjct: 226 cggtcaagttcgacttctccccgttcttgatcgagtacaagagcggcagggtgaagcggc 285 Query: 223 tcatgggcaccagcgtggtgccgccgtccgtggacgcgcgcacgggcgt 271 ||||||||||| ||||||| || |||| | ||||| || ||| ||||| Sbjct: 286 tcatgggcaccgacgtggtggcggcgtcggcggacgtgctcaccggcgt 334 Score = 63.9 bits (32), Expect = 4e-07 Identities = 34/35 (97%) Strand = Plus / Plus Query: 372 tacttccacggnggcgcgttcgtcgtcgagtcggc 406 ||||||||||| ||||||||||||||||||||||| Sbjct: 432 tacttccacggcggcgcgttcgtcgtcgagtcggc 466
>dbj|AK120686.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013168D07, full insert sequence Length = 2304 Score = 52.0 bits (26), Expect = 0.001 Identities = 31/33 (93%) Strand = Plus / Plus Query: 374 cttccacggnggcgcgttcgtcgtcgagtcggc 406 ||||||||| |||||||||||| |||||||||| Sbjct: 585 cttccacggcggcgcgttcgtcatcgagtcggc 617
>dbj|AK105811.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-C02, full insert sequence Length = 1522 Score = 52.0 bits (26), Expect = 0.001 Identities = 31/33 (93%) Strand = Plus / Plus Query: 374 cttccacggnggcgcgttcgtcgtcgagtcggc 406 ||||||||| |||||||||||| |||||||||| Sbjct: 589 cttccacggcggcgcgttcgtcatcgagtcggc 621
>dbj|AK068197.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013140N02, full insert sequence Length = 4012 Score = 52.0 bits (26), Expect = 0.001 Identities = 31/33 (93%) Strand = Plus / Plus Query: 374 cttccacggnggcgcgttcgtcgtcgagtcggc 406 ||||||||| |||||||||||| |||||||||| Sbjct: 2907 cttccacggcggcgcgttcgtcatcgagtcggc 2939
>dbj|AK063390.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-114-H01, full insert sequence Length = 1576 Score = 52.0 bits (26), Expect = 0.001 Identities = 31/33 (93%) Strand = Plus / Minus Query: 374 cttccacggnggcgcgttcgtcgtcgagtcggc 406 ||||||||| |||||||||||| |||||||||| Sbjct: 782 cttccacggcggcgcgttcgtcatcgagtcggc 750
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Minus Query: 140 gcgcggccgcgccgacggcgagg 162 ||||||||||||||||||||||| Sbjct: 1405872 gcgcggccgcgccgacggcgagg 1405850
>dbj|AK071569.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023102G04, full insert sequence Length = 1519 Score = 46.1 bits (23), Expect = 0.092 Identities = 31/34 (91%) Strand = Plus / Plus Query: 374 cttccacggnggcgcgttcgtcgtcgagtcggcc 407 ||||||||| ||||||||| || ||||||||||| Sbjct: 483 cttccacggcggcgcgttcttcatcgagtcggcc 516
>dbj|AK070294.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050O07, full insert sequence Length = 1333 Score = 46.1 bits (23), Expect = 0.092 Identities = 31/34 (91%) Strand = Plus / Plus Query: 374 cttccacggnggcgcgttcgtcgtcgagtcggcc 407 ||||||||| ||||||||| || ||||||||||| Sbjct: 480 cttccacggcggcgcgttcttcatcgagtcggcc 513
>ref|XM_474576.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1317 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 146 ccgcgccgacggcgaggcggtc 167 |||||||||||||||||||||| Sbjct: 136 ccgcgccgacggcgaggcggtc 115
>gb|DQ377804.1|DQ377804S1 Squirrelpox virus 1296/99, partial genome Length = 25260 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 278 cgcggacgtcgtcgtcgaccag 299 |||||||||||||||||||||| Sbjct: 22456 cgcggacgtcgtcgtcgaccag 22477
>emb|AL662959.3|OSJN00160 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019G23, complete sequence Length = 150305 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 146 ccgcgccgacggcgaggcggtc 167 |||||||||||||||||||||| Sbjct: 2562 ccgcgccgacggcgaggcggtc 2583
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 229 gcaccagcgtggtgccgccgtc 250 |||||||||||||||||||||| Sbjct: 1418637 gcaccagcgtggtgccgccgtc 1418616 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 267 ggcgtcgcctccgcggacgtcgtcgtcg 294 |||||||||| ||||| ||||||||||| Sbjct: 4110344 ggcgtcgccttcgcgggcgtcgtcgtcg 4110371
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 146 ccgcgccgacggcgaggcggtc 167 |||||||||||||||||||||| Sbjct: 4374830 ccgcgccgacggcgaggcggtc 4374851
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 144 ggccgcgccgacggcgaggcgg 165 |||||||||||||||||||||| Sbjct: 17332131 ggccgcgccgacggcgaggcgg 17332110
>emb|AL606603.3|OSJN00040 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0050N09, complete sequence Length = 127117 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 146 ccgcgccgacggcgaggcggtc 167 |||||||||||||||||||||| Sbjct: 122698 ccgcgccgacggcgaggcggtc 122719
>dbj|AP003620.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0596H06 Length = 142832 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 144 ggccgcgccgacggcgaggcgg 165 |||||||||||||||||||||| Sbjct: 68724 ggccgcgccgacggcgaggcgg 68703
>dbj|AK065724.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013041I23, full insert sequence Length = 2316 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 144 ggccgcgccgacggcgaggcgg 165 |||||||||||||||||||||| Sbjct: 158 ggccgcgccgacggcgaggcgg 137
>emb|AL442113.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0806H05, complete sequence Length = 102515 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 146 ccgcgccgacggcgaggcggtc 167 |||||||||||||||||||||| Sbjct: 40779 ccgcgccgacggcgaggcggtc 40800
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 141 cgcggccgcgccgacggcgag 161 ||||||||||||||||||||| Sbjct: 2492717 cgcggccgcgccgacggcgag 2492737
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 gcgcggccgcgccgacggcga 160 ||||||||||||||||||||| Sbjct: 2818060 gcgcggccgcgccgacggcga 2818080
>emb|BX640447.1| Bordetella bronchiseptica strain RB50, complete genome; segment 11/16 Length = 349442 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 gcgcggccgcgccgacggcga 160 ||||||||||||||||||||| Sbjct: 331735 gcgcggccgcgccgacggcga 331755
>emb|BX640432.1| Bordetella parapertussis strain 12822, complete genome; segment 10/14 Length = 346301 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 gcgcggccgcgccgacggcga 160 ||||||||||||||||||||| Sbjct: 300236 gcgcggccgcgccgacggcga 300256
>emb|BX640416.1| Bordetella pertussis strain Tohama I, complete genome; segment 6/12 Length = 349354 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 140 gcgcggccgcgccgacggcga 160 ||||||||||||||||||||| Sbjct: 87558 gcgcggccgcgccgacggcga 87538
>emb|BX572607.1| Rhodopseudomonas palustris CGA009 complete genome; segment 15/16 Length = 345012 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 145 gccgcgccgacggcgaggcgg 165 ||||||||||||||||||||| Sbjct: 138806 gccgcgccgacggcgaggcgg 138786
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 141 cgcggccgcgccgacggcgag 161 ||||||||||||||||||||| Sbjct: 672726 cgcggccgcgccgacggcgag 672746
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 141 cgcggccgcgccgacggcgag 161 ||||||||||||||||||||| Sbjct: 1953168 cgcggccgcgccgacggcgag 1953148
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 141 cgcggccgcgccgacggcgag 161 ||||||||||||||||||||| Sbjct: 2338187 cgcggccgcgccgacggcgag 2338167
>ref|NM_193792.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2118 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 tgctgctcctgctcgcgctc 119 |||||||||||||||||||| Sbjct: 14 tgctgctcctgctcgcgctc 33
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 146 ccgcgccgacggcgaggcggtcaagttc 173 ||||||||||| ||| |||||||||||| Sbjct: 1352793 ccgcgccgacgtcgacgcggtcaagttc 1352820
>ref|XM_587106.2| PREDICTED: Bos taurus similar to A-kinase anchor protein 13 isoform 2 (LOC510024), mRNA Length = 2385 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 gctgctcctgctcgcgctcg 120 |||||||||||||||||||| Sbjct: 1978 gctgctcctgctcgcgctcg 1959
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 133 cggcattgcgcggccgcgccgacg 156 |||||||||||| ||||||||||| Sbjct: 764341 cggcattgcgcgtccgcgccgacg 764364
>gb|AY367780.1| Chlamydomonas reinhardtii NADH:ubiquinone oxidoreductase 78 kDa subunit mRNA, complete cds; nuclear gene for mitochondrial product Length = 2312 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 145 gccgcgccgacggcgaggcggtca 168 ||||||||||| |||||||||||| Sbjct: 1560 gccgcgccgaccgcgaggcggtca 1583
>gb|BC114840.1| Bos taurus cDNA clone MGC:140090 IMAGE:8054699, complete cds Length = 1520 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 tgctgctcctgctcgcgctc 119 |||||||||||||||||||| Sbjct: 172 tgctgctcctgctcgcgctc 191
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 cgcggacgtcgtcgtcgacc 297 |||||||||||||||||||| Sbjct: 4051118 cgcggacgtcgtcgtcgacc 4051137
>emb|BX028310.1|CNS08U0A Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA42BC06 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 947 Score = 40.1 bits (20), Expect = 5.7 Identities = 28/31 (90%) Strand = Plus / Plus Query: 378 cacggnggcgcgttcgtcgtcgagtcggcct 408 ||||| |||||||||||||||| ||| |||| Sbjct: 492 cacggtggcgcgttcgtcgtcgggtccgcct 522
>emb|BX026021.1|CNS08S8P Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA4AE06 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 927 Score = 40.1 bits (20), Expect = 5.7 Identities = 28/31 (90%) Strand = Plus / Plus Query: 378 cacggnggcgcgttcgtcgtcgagtcggcct 408 ||||| |||||||||||||||| ||| |||| Sbjct: 493 cacggtggcgcgttcgtcgtcgggtccgcct 523
>emb|BX842575.1| Mycobacterium tuberculosis H37Rv complete genome; segment 4/13 Length = 349306 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 146 ccgcgccgacggcgaggcggtcaagttc 173 ||||||||||| ||| |||||||||||| Sbjct: 319519 ccgcgccgacgtcgacgcggtcaagttc 319546
>emb|BX248338.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 5/14 Length = 299450 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 146 ccgcgccgacggcgaggcggtcaagttc 173 ||||||||||| ||| |||||||||||| Sbjct: 39953 ccgcgccgacgtcgacgcggtcaagttc 39980
>emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete genome; segment 12/29 Length = 276800 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 cggccgcgccgacggcgagg 162 |||||||||||||||||||| Sbjct: 98310 cggccgcgccgacggcgagg 98329
>gb|AE005824.1| Caulobacter crescentus CB15 section 150 of 359 of the complete genome Length = 10405 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 143 cggccgcgccgacggcgaggcggt 166 ||||||||||||||||||| |||| Sbjct: 7847 cggccgcgccgacggcgagccggt 7870
>gb|AC093572.18| Pan troglodytes clone rp43-25g23, complete sequence Length = 195652 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 ctgagccagccatcatggcc 89 |||||||||||||||||||| Sbjct: 183149 ctgagccagccatcatggcc 183168
>gb|AC146761.6| Pan troglodytes clone ptb-54f16, complete sequence Length = 153907 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 ctgagccagccatcatggcc 89 |||||||||||||||||||| Sbjct: 8294 ctgagccagccatcatggcc 8313
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 tgctgctcctgctcgcgctc 119 |||||||||||||||||||| Sbjct: 18201357 tgctgctcctgctcgcgctc 18201376
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 384 ggcgcgttcgtcgtcgagtcggcc 407 |||| ||||||||||||||||||| Sbjct: 4534093 ggcgtgttcgtcgtcgagtcggcc 4534070
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 ccgcgccgacggcgaggcgg 165 |||||||||||||||||||| Sbjct: 3608555 ccgcgccgacggcgaggcgg 3608536 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 ccgagcacccgcggcaggca 349 |||||||||||||||||||| Sbjct: 2108133 ccgagcacccgcggcaggca 2108114 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 cgtggacgcgcgcacgggcg 270 |||||||||||||||||||| Sbjct: 922308 cgtggacgcgcgcacgggcg 922327
>dbj|AP003202.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1075D06 Length = 130528 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 tgctgctcctgctcgcgctc 119 |||||||||||||||||||| Sbjct: 52802 tgctgctcctgctcgcgctc 52821
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 gccgcgccgacggcgaggcg 164 |||||||||||||||||||| Sbjct: 2369571 gccgcgccgacggcgaggcg 2369552
>dbj|AK069218.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023010O06, full insert sequence Length = 2625 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 tgctgctcctgctcgcgctc 119 |||||||||||||||||||| Sbjct: 73 tgctgctcctgctcgcgctc 92
>dbj|AK065519.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013029E19, full insert sequence Length = 3146 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 ggtcactcgcagccgcgcgc 41 |||||||||||||||||||| Sbjct: 273 ggtcactcgcagccgcgcgc 292
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 ccagcgtggtgccgccgtcc 251 |||||||||||||||||||| Sbjct: 313077 ccagcgtggtgccgccgtcc 313096
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 acgtcgtcgtcgaccagggc 302 |||||||||||||||||||| Sbjct: 507052 acgtcgtcgtcgaccagggc 507033
>gb|U33059.1|APU33059 Actinosynnema pretiosum auranticum diaminopimelate decarboxylase (lysA), 3-amino-5-hydroxybenzoic acid synthase, oxidoreductase, phosphatase, and aminodehydroquinate synthase genes, complete cds; transcription activator gene, partial cds; and unknown genes Length = 11905 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 143 cggccgcgccgacggcgaggcggt 166 |||||||||||||| ||||||||| Sbjct: 8956 cggccgcgccgacgccgaggcggt 8933
>gb|AC140110.2| Mus musculus BAC clone RP23-29H6 from 6, complete sequence Length = 214089 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 ctgtcccctccctccgtgct 62 |||||||||||||||||||| Sbjct: 50941 ctgtcccctccctccgtgct 50922
>dbj|AP000353.2| Homo sapiens genomic DNA, chromosome 22q11.2, IGLL region, clone:KB318B8 Length = 123828 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 ctgagccagccatcatggcc 89 |||||||||||||||||||| Sbjct: 28564 ctgagccagccatcatggcc 28545
>dbj|AB070946.1| Streptomyces avermitilis polyketide-8 biosynthetic gene cluster Length = 24790 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 384 ggcgcgttcgtcgtcgagtcggcc 407 |||| ||||||||||||||||||| Sbjct: 10573 ggcgtgttcgtcgtcgagtcggcc 10596 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,378,491 Number of Sequences: 3902068 Number of extensions: 2378491 Number of successful extensions: 59029 Number of sequences better than 10.0: 62 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55933 Number of HSP's gapped (non-prelim): 3096 length of query: 423 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 401 effective length of database: 17,147,199,772 effective search space: 6876027108572 effective search space used: 6876027108572 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
