ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast77c10 |
|---|---|
| Clone Library Name | barley_pub |
>MEM11_ARATH (Q9SJL6) Membrin 11 (AtMEMB11) (Golgi SNAP receptor complex member| 2-1) (27 kDa Golgi SNARE protein) Length = 225 Score = 86.7 bits (213), Expect = 1e-17 Identities = 41/100 (41%), Positives = 58/100 (58%) Frame = +1 Query: 52 GGATLSEMYQSARRLLLSARDGVARVERLXXXXXXXXXXXXXXXXXXXXXXXXXXXRREV 231 GG +LS++Y SA+R+LL ARDG+ R+ER +R++ Sbjct: 8 GGGSLSDVYSSAKRILLKARDGIERLERFESSSMDSPDLASSV-------------KRDI 54 Query: 232 AQIQGLCAQMDRLWRSIPAKGQRDLWKRKVEQLSEEVDSL 351 +++ LC+ MD LWRSIP K QRDLW+RK EQ+ EE + L Sbjct: 55 TEVRSLCSNMDTLWRSIPVKSQRDLWRRKTEQVGEEAEYL 94
>MEM12_ARATH (Q9FK28) Membrin 12 (AtMEMB12) (Golgi SNAP receptor complex member| 2-2) Length = 219 Score = 81.3 bits (199), Expect = 5e-16 Identities = 43/106 (40%), Positives = 60/106 (56%) Frame = +1 Query: 40 SGGGGGATLSEMYQSARRLLLSARDGVARVERLXXXXXXXXXXXXXXXXXXXXXXXXXXX 219 SG GG LSE+Y SA+R+LL AR+G+ ++ER Sbjct: 3 SGTVGG--LSEVYSSAKRILLRARNGIEKLERFDSDPTDLASSV---------------- 44 Query: 220 RREVAQIQGLCAQMDRLWRSIPAKGQRDLWKRKVEQLSEEVDSLKE 357 +R++ ++Q LC+ MD LWRSIP K QRDLW+RK EQ+ EE + L + Sbjct: 45 KRDITEVQSLCSNMDGLWRSIPVKSQRDLWRRKSEQVGEEAEYLNQ 90
>GOGA2_HUMAN (Q08379) Golgin subfamily A member 2 (Cis-Golgi matrix protein| GM130) (Gm130 autoantigen) (Golgin-95) Length = 990 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/34 (35%), Positives = 25/34 (73%) Frame = +1 Query: 256 QMDRLWRSIPAKGQRDLWKRKVEQLSEEVDSLKE 357 QM+R + KG+ +W+++++Q+SE+V +L+E Sbjct: 378 QMERDKYAENLKGESAMWRQRMQQMSEQVHTLRE 411
>GOGA2_RAT (Q62839) Golgin subfamily A member 2 (Cis-Golgi matrix protein| GM130) Length = 986 Score = 30.0 bits (66), Expect = 1.5 Identities = 10/23 (43%), Positives = 20/23 (86%) Frame = +1 Query: 289 KGQRDLWKRKVEQLSEEVDSLKE 357 KG+ +W+++V+Q++E+V +LKE Sbjct: 389 KGESAMWQQRVQQMAEQVHALKE 411
>GOGA2_MOUSE (Q921M4) Golgin subfamily A member 2 (Cis-Golgi matrix protein| GM130) Length = 888 Score = 30.0 bits (66), Expect = 1.5 Identities = 10/23 (43%), Positives = 20/23 (86%) Frame = +1 Query: 289 KGQRDLWKRKVEQLSEEVDSLKE 357 KG+ +W+++V+Q++E+V +LKE Sbjct: 290 KGESAMWQQRVQQMAEQVHTLKE 312
>TAB2_BRARE (Q5RFW2) Mitogen-activated protein kinase kinase kinase| 7-interacting protein 2 homolog Length = 711 Score = 29.3 bits (64), Expect = 2.5 Identities = 14/34 (41%), Positives = 22/34 (64%) Frame = +1 Query: 253 AQMDRLWRSIPAKGQRDLWKRKVEQLSEEVDSLK 354 A+M+RLW + K KRK+E+L EEV+ ++ Sbjct: 553 ARMERLWHELELK------KRKLEKLKEEVNEME 580
>CABL1_MOUSE (Q9ESJ1) CDK5 and ABL1 enzyme substrate 1 (Interactor with CDK3 1)| (Ik3-1) Length = 568 Score = 28.5 bits (62), Expect = 4.2 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = +1 Query: 28 AMDFSGGGGGATLSEMYQSARRLLLSARDGVARVE 132 A++ SG GG + E Q ARR L+S R + +E Sbjct: 223 ALEQSGQGGSTSALEQLQRARRRLISQRSSLETLE 257
>WASF4_HUMAN (Q8IV90) Wiskott-Aldrich syndrome protein family member 4| (WASP-family protein member 4) Length = 625 Score = 28.5 bits (62), Expect = 4.2 Identities = 15/36 (41%), Positives = 23/36 (63%) Frame = -1 Query: 116 PSRADSSSRRALWYISDSVAPPPPPEKSMAVEIDRG 9 PS++DS+S + + D++ PPPP E S V+ RG Sbjct: 377 PSQSDSASSPSPSFSEDNL-PPPPAEFSYPVDNQRG 411
>GOG8A_HUMAN (Q9NZW0) Golgin subfamily A member 8A/B (Golgi autoantigen| golgin-67) (88 kDa Golgi protein) (Gm88 autoantigen) Length = 460 Score = 28.5 bits (62), Expect = 4.2 Identities = 12/34 (35%), Positives = 24/34 (70%) Frame = +1 Query: 256 QMDRLWRSIPAKGQRDLWKRKVEQLSEEVDSLKE 357 Q++R + KG+R W++++ ++S+EV +LKE Sbjct: 84 QLERDQYAEQIKGERAQWQQRMRKMSQEVCTLKE 117
>LAMA_DROME (Q00174) Laminin alpha chain precursor| Length = 3712 Score = 28.1 bits (61), Expect = 5.5 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = +1 Query: 259 MDRLWRSIPAKGQRDLWKRKVEQLSEEVDSLK 354 +++L +PA+ QRD+WK S+ ++ LK Sbjct: 2547 INKLIDQLPAESQRDMWKNSNANASDALEILK 2578
>Y530_METJA (Q57950) Hypothetical protein MJ0530| Length = 198 Score = 27.7 bits (60), Expect = 7.2 Identities = 11/43 (25%), Positives = 26/43 (60%) Frame = +1 Query: 229 VAQIQGLCAQMDRLWRSIPAKGQRDLWKRKVEQLSEEVDSLKE 357 V+ ++G+ ++D + +++ + + K+K E+L E + LKE Sbjct: 102 VSNVEGVLNRVDNILQTLIRWAETEEQKKKAEELRERIKKLKE 144
>YCF68_PINTH (P52807) Hypothetical 8.1 kDa protein ycf68 (ORF 75A)| Length = 75 Score = 27.3 bits (59), Expect = 9.4 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = -3 Query: 291 LGGDGAPEAVHLGAEALDLRHLP 223 LGG G P +HLG+ L+ ++P Sbjct: 41 LGGPGVPVVIHLGSSLLENPYIP 63
>COAT_IRV22 (P22166) Major capsid protein (MCP) (Major structural protein)| (MSP) Length = 472 Score = 27.3 bits (59), Expect = 9.4 Identities = 12/41 (29%), Positives = 23/41 (56%) Frame = +1 Query: 10 PRSISTAMDFSGGGGGATLSEMYQSARRLLLSARDGVARVE 132 P + S A+ +GG GG S+ QS ++++ + + R+E Sbjct: 412 PAASSAAISAAGGTGGQAGSDYAQSYEFVIVAVNNNIVRIE 452
>BPAEA_MOUSE (Q91ZU8) Bullous pemphigoid antigen 1, isoform 5 (BPA)| (Hemidesmosomal plaque protein) (Dystonia musculorum protein) (Dystonin) Length = 2611 Score = 27.3 bits (59), Expect = 9.4 Identities = 14/44 (31%), Positives = 27/44 (61%) Frame = +1 Query: 220 RREVAQIQGLCAQMDRLWRSIPAKGQRDLWKRKVEQLSEEVDSL 351 RR++ +IQ C + + ++ P QR+ ++K E+L ++VD L Sbjct: 1291 RRKITEIQFSCRESAAVAQARP---QREQGRQKEEELKQQVDEL 1331 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.131 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,744,063 Number of Sequences: 219361 Number of extensions: 413799 Number of successful extensions: 3029 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2788 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2999 length of database: 80,573,946 effective HSP length: 95 effective length of database: 59,734,651 effective search space used: 1433631624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
