ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast77c06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ289133.1|MMU289133 Mus musculus mRNA for chondroitin 4-O-s... 44 0.41
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.41
3dbj|AP004790.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.41
4ref|NM_192594.1| Oryza sativa (japonica cultivar-group), predic... 42 1.6
5ref|NM_193223.1| Oryza sativa (japonica cultivar-group), predic... 42 1.6
6ref|XM_468680.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.6
7gb|BT017931.1| Zea mays clone EL01N0520A01.c mRNA sequence 42 1.6
8gb|AC156570.2| Mus musculus BAC clone RP23-242N11 from chromosom... 42 1.6
9ref|XM_870177.1| PREDICTED: Bos taurus similar to potassium volt... 42 1.6
10gb|AC096856.7| Oryza sativa chromosome 3 BAC OSJNBa0075M12 genom... 42 1.6
11ref|NM_004977.2| Homo sapiens potassium voltage-gated channel, S... 42 1.6
12gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.6
13gb|AC120538.4| Oryza sativa chromosome 3 BAC OSJNBb0059G13 genom... 42 1.6
14gb|AY138839.1| Oryctolagus cuniculus Shaw type potassium channel... 42 1.6
15emb|BX294143.1| Pirellula sp. strain 1 complete genome; segment ... 42 1.6
16gb|AF430400.1| Azoarcus sp. BH72 putative ammonium transporter (... 42 1.6
17gb|AF055989.1|AF055989 Homo sapiens Shaw type potassium channel ... 42 1.6
18gb|AC008655.7| Homo sapiens chromosome 19 clone CTB-191K22, comp... 42 1.6
19gb|AC008213.4|AC008213 Drosophila melanogaster, chromosome 3R, r... 42 1.6
20gb|AC005813.13|AC005813 Drosophila melanogaster, chromosome 3R, ... 42 1.6
21dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
22dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
23dbj|AP003328.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
24dbj|AP003445.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
25dbj|BA000020.2| Nostoc sp. PCC 7120 plasmid pCC7120alpha DNA, co... 42 1.6
26gb|AF230376.1|AF230376 Meriones unguiculatus prestin (Pres) mRNA... 42 1.6
27dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 42 1.6
28dbj|AP003048.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
29dbj|AK067476.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
30gb|AE003756.3| Drosophila melanogaster chromosome 3R, section 94... 42 1.6
31emb|AJ535071.1|OSA535071 Oryza sativa (japonica cultivar-group) ... 42 1.6
32gb|AC170911.3| Mus musculus BAC clone RP23-199D18 from chromosom... 42 1.6
33gb|AC167126.6| Mus musculus chromosome 1, clone RP24-104I19, com... 40 6.5
34ref|XM_483068.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.5
35gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 6.5
36ref|NM_189371.1| Oryza sativa (japonica cultivar-group), predic... 40 6.5
37ref|XM_476437.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.5
38gb|U58991.1|SIU58991 Simian immunodeficiency virus - agm.tan-1, ... 40 6.5
39gb|AC138210.10| Mus musculus chromosome 1, clone RP23-346B12, co... 40 6.5
40gb|AC105152.10| Mus musculus chromosome 1, clone RP23-265D3, com... 40 6.5
41gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 6.5
42emb|AL591785.1|SME591785 Sinorhizobium meliloti 1021 complete ch... 40 6.5
43gb|AC138222.15| Mus musculus chromosome 1, clone RP23-380H16, co... 40 6.5
44emb|AL604022.21| Mouse DNA sequence from clone RP23-449P23 on ch... 40 6.5
45dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, compl... 40 6.5
46gb|AE005785.1| Caulobacter crescentus CB15 section 111 of 359 of... 40 6.5
47dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 6.5
48dbj|AB236415.1| Takifugu rubripes TLE3 mRNA for transducin-like ... 40 6.5
49gb|AC099049.2| Homo sapiens chromosome 3 clone RP11-291P10, comp... 40 6.5
50ref|NM_172448.1| Mus musculus ring finger protein 43 (Rnf43), mRNA 40 6.5
51gb|AE016816.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 40 6.5
52dbj|AK028750.1| Mus musculus 10 days neonate skin cDNA, RIKEN fu... 40 6.5
53gb|AC159747.8| Mus musculus 10 BAC RP23-416G20 (Roswell Park Can... 40 6.5
54dbj|AK011198.1| Mus musculus 10 days embryo whole body cDNA, RIK... 40 6.5
55dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
56dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
57dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
58dbj|AP003263.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
59gb|U18814.1|SCE3612 Saccharomyces cerevisiae chromosome V lambda... 40 6.5
60gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 6.5
61dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 6.5
62dbj|AP006620.1| Nocardia farcinica IFM 10152 plasmid pNF2 DNA, c... 40 6.5
63dbj|AP006619.1| Nocardia farcinica IFM 10152 plasmid pNF1 DNA, c... 40 6.5
64dbj|AP004678.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
65dbj|AP004620.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
66dbj|AP005165.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
67dbj|AK109340.2| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.5
68dbj|AP004557.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
69dbj|AK119199.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.5
70ref|XM_310676.1| Anopheles gambiae str. PEST ENSANGP00000020804 ... 40 6.5
71dbj|AK104420.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.5
72dbj|AK104065.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.5
73dbj|AK073009.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.5
74dbj|AK070767.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.5
75ref|NM_209023.1| Eremothecium gossypii ACR268Cp (ACR268C), mRNA 40 6.5
76emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 6.5
77tpe|BN000549.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 40 6.5
78gb|BC075707.1| Mus musculus ring finger protein 43, mRNA (cDNA c... 40 6.5
79gb|BC029717.1| Mus musculus ring finger protein 43, mRNA (cDNA c... 40 6.5
80gb|BC037465.1| Mus musculus ring finger protein 43, mRNA (cDNA c... 40 6.5
81gb|BC004781.1| Mus musculus ring finger protein 43, mRNA (cDNA c... 40 6.5
82ref|NM_001037860.1| Takifugu rubripes transducin-like enhancer o... 40 6.5
83gb|AF006304.1|AF006304 Saccharomyces cerevisiae protein tyrosine... 40 6.5
84gb|AC169668.1| Mus musculus chromosome 1, clone RP23-317J12, com... 40 6.5
85emb|AL845171.5| Mouse DNA sequence from clone RP23-38N8 on chrom... 40 6.5 
>emb|AJ289133.1|MMU289133 Mus musculus mRNA for chondroitin 4-O-sulfotransferase (C4S-1 gene)
          Length = 1990

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 436 tggcagtgcacggcggcggcgg 457
           ||||||||||||||||||||||
Sbjct: 7   tggcagtgcacggcggcggcgg 28
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 446      cggcggcggcggtggcgaacgt 467
                ||||||||||||||||||||||
Sbjct: 19504672 cggcggcggcggtggcgaacgt 19504651
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>dbj|AP004790.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0476H10
          Length = 151703

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 446    cggcggcggcggtggcgaacgt 467
              ||||||||||||||||||||||
Sbjct: 122199 cggcggcggcggtggcgaacgt 122178
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>ref|NM_192594.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 741

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 442 tgcacggcggcggcggtggcg 462
           |||||||||||||||||||||
Sbjct: 173 tgcacggcggcggcggtggcg 193
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>ref|NM_193223.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3864

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 446 cggcggcggcggtggcgaacg 466
           |||||||||||||||||||||
Sbjct: 188 cggcggcggcggtggcgaacg 208
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>ref|XM_468680.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 891

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 441 gtgcacggcggcggcggtggc 461
           |||||||||||||||||||||
Sbjct: 468 gtgcacggcggcggcggtggc 488
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>gb|BT017931.1| Zea mays clone EL01N0520A01.c mRNA sequence
          Length = 1405

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 446 cggcggcggcggtggcgaacg 466
           |||||||||||||||||||||
Sbjct: 73  cggcggcggcggtggcgaacg 93
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>gb|AC156570.2| Mus musculus BAC clone RP23-242N11 from chromosome 3, complete sequence
          Length = 198738

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 15    gagggagacatctttgcttag 35
             |||||||||||||||||||||
Sbjct: 98297 gagggagacatctttgcttag 98277
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>ref|XM_870177.1| PREDICTED: Bos taurus similar to potassium voltage gated channel,
           Shaw-related subfamily, member 3 (LOC617852), mRNA
          Length = 1806

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 443 gcacggcggcggcggtggcga 463
           |||||||||||||||||||||
Sbjct: 9   gcacggcggcggcggtggcga 29
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>gb|AC096856.7| Oryza sativa chromosome 3 BAC OSJNBa0075M12 genomic sequence, complete
             sequence
          Length = 130272

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 264   tattcctcgcacaagagcatc 284
             |||||||||||||||||||||
Sbjct: 92598 tattcctcgcacaagagcatc 92618
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>ref|NM_004977.2| Homo sapiens potassium voltage-gated channel, Shaw-related
           subfamily, member 3 (KCNC3), mRNA
          Length = 3176

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 443 gcacggcggcggcggtggcga 463
           |||||||||||||||||||||
Sbjct: 532 gcacggcggcggcggtggcga 552
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 264      tattcctcgcacaagagcatc 284
                |||||||||||||||||||||
Sbjct: 35091697 tattcctcgcacaagagcatc 35091717



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 441      gtgcacggcggcggcggtggc 461
                |||||||||||||||||||||
Sbjct: 17010154 gtgcacggcggcggcggtggc 17010174
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>gb|AC120538.4| Oryza sativa chromosome 3 BAC OSJNBb0059G13 genomic sequence, complete
             sequence
          Length = 157662

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 441   gtgcacggcggcggcggtggc 461
             |||||||||||||||||||||
Sbjct: 40900 gtgcacggcggcggcggtggc 40920
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>gb|AY138839.1| Oryctolagus cuniculus Shaw type potassium channel Kv3.3 (KCNC3)
           mRNA, complete cds
          Length = 2337

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 443 gcacggcggcggcggtggcga 463
           |||||||||||||||||||||
Sbjct: 289 gcacggcggcggcggtggcga 309
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>emb|BX294143.1| Pirellula sp. strain 1 complete genome; segment 11/24
          Length = 303250

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 367   tccatcgcatccacatcccactgct 391
             |||||||||||||||||| ||||||
Sbjct: 52294 tccatcgcatccacatccgactgct 52318
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>gb|AF430400.1| Azoarcus sp. BH72 putative ammonium transporter (amtB) gene,
           complete cds
          Length = 1430

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 443 gcacggcggcggcggtggcga 463
           |||||||||||||||||||||
Sbjct: 939 gcacggcggcggcggtggcga 919
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>gb|AF055989.1|AF055989 Homo sapiens Shaw type potassium channel Kv3.3 (KCNC3) mRNA,
           complete cds
          Length = 3177

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 443 gcacggcggcggcggtggcga 463
           |||||||||||||||||||||
Sbjct: 532 gcacggcggcggcggtggcga 552
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>gb|AC008655.7| Homo sapiens chromosome 19 clone CTB-191K22, complete sequence
          Length = 123149

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 443   gcacggcggcggcggtggcga 463
             |||||||||||||||||||||
Sbjct: 48140 gcacggcggcggcggtggcga 48120
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>gb|AC008213.4|AC008213 Drosophila melanogaster, chromosome 3R, region 97B-97B, BAC clone
              BACR15K06, complete sequence
          Length = 183370

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 359    tctccatctccatcgcatcca 379
              |||||||||||||||||||||
Sbjct: 159331 tctccatctccatcgcatcca 159311
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>gb|AC005813.13|AC005813 Drosophila melanogaster, chromosome 3R, region 97B2-97B9, BAC clone
              BACR48G23, complete sequence
          Length = 166543

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 359    tctccatctccatcgcatcca 379
              |||||||||||||||||||||
Sbjct: 116464 tctccatctccatcgcatcca 116444
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 264      tattcctcgcacaagagcatc 284
                |||||||||||||||||||||
Sbjct: 35181769 tattcctcgcacaagagcatc 35181789



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 441      gtgcacggcggcggcggtggc 461
                |||||||||||||||||||||
Sbjct: 17003723 gtgcacggcggcggcggtggc 17003743
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 446      cggcggcggcggtggcgaacg 466
                |||||||||||||||||||||
Sbjct: 24598381 cggcggcggcggtggcgaacg 24598361



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 442      tgcacggcggcggcggtggcg 462
                |||||||||||||||||||||
Sbjct: 23169923 tgcacggcggcggcggtggcg 23169943



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 446      cggcggcggcggtggcgaacg 466
                |||||||||||||||||||||
Sbjct: 19347329 cggcggcggcggtggcgaacg 19347349



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 445      acggcggcggcggtggcgaa 464
                ||||||||||||||||||||
Sbjct: 42422049 acggcggcggcggtggcgaa 42422068
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>dbj|AP003328.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1040D09
          Length = 148102

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 446   cggcggcggcggtggcgaacg 466
             |||||||||||||||||||||
Sbjct: 24344 cggcggcggcggtggcgaacg 24324
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>dbj|AP003445.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1029_F04
          Length = 141834

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 446   cggcggcggcggtggcgaacg 466
             |||||||||||||||||||||
Sbjct: 75334 cggcggcggcggtggcgaacg 75354
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>dbj|BA000020.2| Nostoc sp. PCC 7120 plasmid pCC7120alpha DNA, complete genome
          Length = 408101

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 214    agtcccaactcccaagcaaca 234
              |||||||||||||||||||||
Sbjct: 207678 agtcccaactcccaagcaaca 207658
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>gb|AF230376.1|AF230376 Meriones unguiculatus prestin (Pres) mRNA, complete cds
          Length = 4113

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 441 gtgcacggcggcggcggtggcgaac 465
           |||||||||||||||||||| ||||
Sbjct: 883 gtgcacggcggcggcggtggtgaac 859
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 442     tgcacggcggcggcggtggcg 462
               |||||||||||||||||||||
Sbjct: 2636750 tgcacggcggcggcggtggcg 2636770
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>dbj|AP003048.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0710A02
          Length = 157201

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 442    tgcacggcggcggcggtggcg 462
              |||||||||||||||||||||
Sbjct: 102082 tgcacggcggcggcggtggcg 102102
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>dbj|AK067476.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013107O15, full
           insert sequence
          Length = 2054

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 446 cggcggcggcggtggcgaacg 466
           |||||||||||||||||||||
Sbjct: 45  cggcggcggcggtggcgaacg 25
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>gb|AE003756.3| Drosophila melanogaster chromosome 3R, section 94 of 118 of the complete
              sequence
          Length = 322332

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 359    tctccatctccatcgcatcca 379
              |||||||||||||||||||||
Sbjct: 220224 tctccatctccatcgcatcca 220204
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>emb|AJ535071.1|OSA535071 Oryza sativa (japonica cultivar-group) mdr6 gene for MDR-like ABC
           transporter, exons 1-12
          Length = 8274

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 446 cggcggcggcggtggcgaacg 466
           |||||||||||||||||||||
Sbjct: 188 cggcggcggcggtggcgaacg 208
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>gb|AC170911.3| Mus musculus BAC clone RP23-199D18 from chromosome 3, complete sequence
          Length = 196971

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 15    gagggagacatctttgcttag 35
             |||||||||||||||||||||
Sbjct: 14363 gagggagacatctttgcttag 14383
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>gb|AC167126.6| Mus musculus chromosome 1, clone RP24-104I19, complete sequence
          Length = 156900

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 353   ccctattctccatctccatc 372
             ||||||||||||||||||||
Sbjct: 83167 ccctattctccatctccatc 83148
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>ref|XM_483068.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1467

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 443  gcacggcggcggcggtggcg 462
            ||||||||||||||||||||
Sbjct: 1376 gcacggcggcggcggtggcg 1395
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 118     gcgaacgaggccgcgctcgc 137
               ||||||||||||||||||||
Sbjct: 3041822 gcgaacgaggccgcgctcgc 3041803
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>ref|NM_189371.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1098

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 445 acggcggcggcggtggcgaa 464
           ||||||||||||||||||||
Sbjct: 70  acggcggcggcggtggcgaa 89
to top
>ref|XM_476437.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2726

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 449 cggcggcggtggcgaacgtg 468
           ||||||||||||||||||||
Sbjct: 478 cggcggcggtggcgaacgtg 459
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>gb|U58991.1|SIU58991 Simian immunodeficiency virus - agm.tan-1, complete genome
          Length = 9784

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 284  cagcagcagagacaagacgccgcc 307
            |||||||||||||||| |||||||
Sbjct: 8531 cagcagcagagacaagtcgccgcc 8554
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>gb|AC138210.10| Mus musculus chromosome 1, clone RP23-346B12, complete sequence
          Length = 206044

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 353    ccctattctccatctccatc 372
              ||||||||||||||||||||
Sbjct: 196372 ccctattctccatctccatc 196391
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>gb|AC105152.10| Mus musculus chromosome 1, clone RP23-265D3, complete sequence
          Length = 230407

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 277    agagcatcagcagcagagac 296
              ||||||||||||||||||||
Sbjct: 207197 agagcatcagcagcagagac 207216
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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 114     gcgtgcgaacgaggccgcgc 133
               ||||||||||||||||||||
Sbjct: 1141513 gcgtgcgaacgaggccgcgc 1141532
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>emb|AL591785.1|SME591785 Sinorhizobium meliloti 1021 complete chromosome; segment 4/12
          Length = 286550

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 436    tggcagtgcacggcggcggcggtg 459
              |||||||||||||| |||||||||
Sbjct: 198150 tggcagtgcacggctgcggcggtg 198127
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>gb|AC138222.15| Mus musculus chromosome 1, clone RP23-380H16, complete sequence
          Length = 184152

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 277    agagcatcagcagcagagac 296
              ||||||||||||||||||||
Sbjct: 169259 agagcatcagcagcagagac 169278
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>emb|AL604022.21| Mouse DNA sequence from clone RP23-449P23 on chromosome 11 Contains the
             3' end of a novel gene (4732452J19Rik), the Supt4h gene
             for suppressor of Ty 4 homolog (S. cerevisiae), a novel
             gene (A430104N18Rik), the Bzrap1 gene for benzodiazapine
             receptor associated protein 1, the Mpo gene for
             myeloperoxidase, a novel gene, the 3' end of the Lpo gene
             for lactoperoxidase and a CpG island, complete sequence
          Length = 92337

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     tgccttggacttggagggag 21
             ||||||||||||||||||||
Sbjct: 14845 tgccttggacttggagggag 14826
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>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome
          Length = 4171146

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 445    acggcggcggcggtggcgaa 464
              ||||||||||||||||||||
Sbjct: 913367 acggcggcggcggtggcgaa 913348
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>gb|AE005785.1| Caulobacter crescentus CB15 section 111 of 359 of the complete genome
          Length = 10894

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 446   cggcggcggcggtggcgaac 465
             ||||||||||||||||||||
Sbjct: 10832 cggcggcggcggtggcgaac 10813
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 443     gcacggcggcggcggtggcg 462
               ||||||||||||||||||||
Sbjct: 1749958 gcacggcggcggcggtggcg 1749977
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>dbj|AB236415.1| Takifugu rubripes TLE3 mRNA for transducin-like enhancer protein 3,
           complete cds
          Length = 2349

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 273 cacaagagcatcagcagcag 292
           ||||||||||||||||||||
Sbjct: 311 cacaagagcatcagcagcag 330
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>gb|AC099049.2| Homo sapiens chromosome 3 clone RP11-291P10, complete sequence
          Length = 180339

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 326    gcacagaatcccacactgat 345
              ||||||||||||||||||||
Sbjct: 102341 gcacagaatcccacactgat 102360
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>ref|NM_172448.1| Mus musculus ring finger protein 43 (Rnf43), mRNA
          Length = 3670

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 2    tgccttggacttggagggag 21
            ||||||||||||||||||||
Sbjct: 3147 tgccttggacttggagggag 3128
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>gb|AE016816.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome III,
              complete sequence
          Length = 907057

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 118    gcgaacgaggccgcgctcgc 137
              ||||||||||||||||||||
Sbjct: 843726 gcgaacgaggccgcgctcgc 843707
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>dbj|AK028750.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched
            library, clone:4732452J19 product:hypothetical
            Serine-rich region/Histidine-rich region/RING finger
            containing protein, full insert sequence
          Length = 3670

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 2    tgccttggacttggagggag 21
            ||||||||||||||||||||
Sbjct: 3147 tgccttggacttggagggag 3128
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>gb|AC159747.8| Mus musculus 10 BAC RP23-416G20 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 194198

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 351   caccctattctccatctcca 370
             ||||||||||||||||||||
Sbjct: 72697 caccctattctccatctcca 72678
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>dbj|AK011198.1| Mus musculus 10 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:2600013I18 product:PROTEIN
           PHOSPHATASE 2A B REGULATORY SUBUNIT DELTA ISOFORM, full
           insert sequence
          Length = 1746

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 443 gcacggcggcggcggtggcg 462
           ||||||||||||||||||||
Sbjct: 61  gcacggcggcggcggtggcg 80
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 443      gcacggcggcggcggtggcg 462
                ||||||||||||||||||||
Sbjct: 24137363 gcacggcggcggcggtggcg 24137382
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 449     cggcggcggtggcgaacgtg 468
               ||||||||||||||||||||
Sbjct: 1179721 cggcggcggtggcgaacgtg 1179702
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 213      tagtcccaactcccaagcaa 232
                ||||||||||||||||||||
Sbjct: 29764863 tagtcccaactcccaagcaa 29764882
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>dbj|AP003263.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0483G10
          Length = 190721

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 445   acggcggcggcggtggcgaa 464
             ||||||||||||||||||||
Sbjct: 81387 acggcggcggcggtggcgaa 81406
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>gb|U18814.1|SCE3612 Saccharomyces cerevisiae chromosome V lambda clone 3612 and cosmid
            9747
          Length = 8443

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 402  tcctgttactgctgctgctt 421
            ||||||||||||||||||||
Sbjct: 5974 tcctgttactgctgctgctt 5955
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 446     cggcggcggcggtggcgaacgtga 469
               |||||||||||||||||| |||||
Sbjct: 4527158 cggcggcggcggtggcgagcgtga 4527135
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 418     gcttcatgtcgcgcttcttg 437
               ||||||||||||||||||||
Sbjct: 1706986 gcttcatgtcgcgcttcttg 1706967
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>dbj|AP006620.1| Nocardia farcinica IFM 10152 plasmid pNF2 DNA, complete sequence
          Length = 87093

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 119   cgaacgaggccgcgctcgct 138
             ||||||||||||||||||||
Sbjct: 79369 cgaacgaggccgcgctcgct 79388
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>dbj|AP006619.1| Nocardia farcinica IFM 10152 plasmid pNF1 DNA, complete sequence
          Length = 184026

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 119    cgaacgaggccgcgctcgct 138
              ||||||||||||||||||||
Sbjct: 115321 cgaacgaggccgcgctcgct 115340
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>dbj|AP004678.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1136_F03
          Length = 110783

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   tagtcccaactcccaagcaa 232
             ||||||||||||||||||||
Sbjct: 62993 tagtcccaactcccaagcaa 63012
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>dbj|AP004620.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
            clone:P0605H02
          Length = 175547

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 443  gcacggcggcggcggtggcg 462
            ||||||||||||||||||||
Sbjct: 3702 gcacggcggcggcggtggcg 3721
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>dbj|AP005165.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0057M23
          Length = 168029

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 449   cggcggcggtggcgaacgtg 468
             ||||||||||||||||||||
Sbjct: 81328 cggcggcggtggcgaacgtg 81309
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>dbj|AK109340.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-E11, full
           insert sequence
          Length = 1346

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 445 acggcggcggcggtggcgaa 464
           ||||||||||||||||||||
Sbjct: 190 acggcggcggcggtggcgaa 209
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>dbj|AP004557.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0028A08
          Length = 150818

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 443   gcacggcggcggcggtggcg 462
             ||||||||||||||||||||
Sbjct: 90849 gcacggcggcggcggtggcg 90868
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>dbj|AK119199.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-D02, full
           insert sequence
          Length = 1390

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 445 acggcggcggcggtggcgaa 464
           ||||||||||||||||||||
Sbjct: 190 acggcggcggcggtggcgaa 209
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>ref|XM_310676.1| Anopheles gambiae str. PEST ENSANGP00000020804
           (ENSANGG00000018315), partial mRNA
          Length = 1191

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 418 gcttcatgtcgcgcttcttg 437
           ||||||||||||||||||||
Sbjct: 763 gcttcatgtcgcgcttcttg 744
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>dbj|AK104420.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-C03, full
           insert sequence
          Length = 1397

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 445 acggcggcggcggtggcgaa 464
           ||||||||||||||||||||
Sbjct: 190 acggcggcggcggtggcgaa 209
to top
>dbj|AK104065.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-F04, full
           insert sequence
          Length = 1394

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 445 acggcggcggcggtggcgaa 464
           ||||||||||||||||||||
Sbjct: 190 acggcggcggcggtggcgaa 209
to top
>dbj|AK073009.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023145L12, full
           insert sequence
          Length = 1395

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 445 acggcggcggcggtggcgaa 464
           ||||||||||||||||||||
Sbjct: 191 acggcggcggcggtggcgaa 210
to top
>dbj|AK070767.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023069J11, full
           insert sequence
          Length = 2727

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 449 cggcggcggtggcgaacgtg 468
           ||||||||||||||||||||
Sbjct: 479 cggcggcggtggcgaacgtg 460
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>ref|NM_209023.1| Eremothecium gossypii ACR268Cp (ACR268C), mRNA
          Length = 1869

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  gcgaacgaggccgcgctcgc 137
            ||||||||||||||||||||
Sbjct: 1267 gcgaacgaggccgcgctcgc 1286
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 444    cacggcggcggcggtggcga 463
              ||||||||||||||||||||
Sbjct: 375690 cacggcggcggcggtggcga 375671
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>tpe|BN000549.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx20 gene for
           class III peroxidase 20 precursor, exons 1-2
          Length = 2747

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 445 acggcggcggcggtggcgaa 464
           ||||||||||||||||||||
Sbjct: 70  acggcggcggcggtggcgaa 89
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>gb|BC075707.1| Mus musculus ring finger protein 43, mRNA (cDNA clone IMAGE:3989267),
            partial cds
          Length = 3470

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 2    tgccttggacttggagggag 21
            ||||||||||||||||||||
Sbjct: 2930 tgccttggacttggagggag 2911
to top
>gb|BC029717.1| Mus musculus ring finger protein 43, mRNA (cDNA clone IMAGE:5025887),
            partial cds
          Length = 2703

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 2    tgccttggacttggagggag 21
            ||||||||||||||||||||
Sbjct: 2164 tgccttggacttggagggag 2145
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>gb|BC037465.1| Mus musculus ring finger protein 43, mRNA (cDNA clone IMAGE:4196180),
            with apparent retained intron
          Length = 2765

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 2    tgccttggacttggagggag 21
            ||||||||||||||||||||
Sbjct: 2228 tgccttggacttggagggag 2209
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>gb|BC004781.1| Mus musculus ring finger protein 43, mRNA (cDNA clone IMAGE:3588131),
            partial cds
          Length = 1633

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 2    tgccttggacttggagggag 21
            ||||||||||||||||||||
Sbjct: 1094 tgccttggacttggagggag 1075
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>ref|NM_001037860.1| Takifugu rubripes transducin-like enhancer of split 3 (tle3), mRNA
          Length = 2349

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 273 cacaagagcatcagcagcag 292
           ||||||||||||||||||||
Sbjct: 311 cacaagagcatcagcagcag 330
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>gb|AF006304.1|AF006304 Saccharomyces cerevisiae protein tyrosine phosphatase (PTP3) gene,
            complete cds
          Length = 3069

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 402  tcctgttactgctgctgctt 421
            ||||||||||||||||||||
Sbjct: 2169 tcctgttactgctgctgctt 2188
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>gb|AC169668.1| Mus musculus chromosome 1, clone RP23-317J12, complete sequence
          Length = 224712

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 353   ccctattctccatctccatc 372
             ||||||||||||||||||||
Sbjct: 50543 ccctattctccatctccatc 50524
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>emb|AL845171.5| Mouse DNA sequence from clone RP23-38N8 on chromosome 4, complete
              sequence
          Length = 229784

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 277    agagcatcagcagcagagac 296
              ||||||||||||||||||||
Sbjct: 114296 agagcatcagcagcagagac 114277


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,178,365
Number of Sequences: 3902068
Number of extensions: 5178365
Number of successful extensions: 130775
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 128581
Number of HSP's gapped (non-prelim): 2193
length of query: 478
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 456
effective length of database: 17,147,199,772
effective search space: 7819123096032
effective search space used: 7819123096032
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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