ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bast77c02 |
|---|---|
| Clone Library Name | barley_pub |
>LYAM3_MOUSE (Q01102) P-selectin precursor (Granule membrane protein 140)| (GMP-140) (PADGEM) (Leukocyte-endothelial cell adhesion molecule 3) (LECAM3) (CD62P antigen) Length = 768 Score = 37.0 bits (84), Expect = 0.030 Identities = 24/80 (30%), Positives = 30/80 (37%) Frame = +1 Query: 91 PCRSSRSHCQSLET*PAGCMAKRNPVATTXXXXXXXASSEPWPAGGASSTARTRGMGSWT 270 P + CQSLE P G MA +P+A +P S+T G G W Sbjct: 254 PPKCDAVQCQSLEAPPHGTMACMHPIAAFAYDSSCKFECQPGYRARGSNTLHCTGSGQW- 312 Query: 271 LWTRTSAPASSPTARWCRPP 330 S P + A C PP Sbjct: 313 -----SEPLPTCEAIACEPP 327
>Y4HP_RHISN (P50360) Hypothetical 61.7 kDa protein y4hP| Length = 552 Score = 31.6 bits (70), Expect = 1.2 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 11/87 (12%) Frame = +3 Query: 114 LPIVGDIASRLHGQEKPRGDDTTPPAPARVLGTVASRWRELHGENSWDGLLDPL------ 275 +P+ I + + E+ GDDTT P AR T W + + + G P Sbjct: 247 MPVFDLIEAHVFAAERLHGDDTTIPIQARDKCTTGRIWTYVCDDRPFGGTAPPAAIYYAS 306 Query: 276 ----DPHLRSSIISYGEMVQA-AYDGF 341 H + + YG ++Q+ Y+GF Sbjct: 307 SDRRGEHPQKHLAGYGGILQSDCYNGF 333
>CIC_HUMAN (Q96RK0) Protein capicua homolog| Length = 1608 Score = 30.8 bits (68), Expect = 2.1 Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 1/82 (1%) Frame = +1 Query: 97 RSSRSHCQS-LET*PAGCMAKRNPVATTXXXXXXXASSEPWPAGGASSTARTRGMGSWTL 273 RSS +HC+ L+ P G PVA +SS PA ++S A + +GS T Sbjct: 500 RSSFTHCRPPLDPEPPG--PPDPPVAFGKGYGSAPSSSASSPASSSASAATSFSLGSGTF 557 Query: 274 WTRTSAPASSPTARWCRPPTTG 339 + S S TA RPP G Sbjct: 558 KAQESGQGS--TAGPLRPPPPG 577
>SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)| (GKAP/SAPAP-interacting protein) (SPANK-1) (Synamon) (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP) Length = 2167 Score = 30.0 bits (66), Expect = 3.6 Identities = 31/154 (20%), Positives = 51/154 (33%), Gaps = 18/154 (11%) Frame = +1 Query: 82 PRAPCRSSRSHCQSLET*PAGCMAKRNPVATTXXXXXXXASSEPWPAGGASSTARTRGMG 261 P P S+ +L T A +++ + + PW GG+ + + G Sbjct: 1855 PPLPGPLSQPQASALATVKASIISELSSKLQQFGGSSTAGGALPWARGGSGGSTDSHHGG 1914 Query: 262 SWTLWTRTSA-----------------PASSPTARWCRPPTTGXXXXXXXXXXXXXXXXX 390 + + RTS+ P+SS W +PP Sbjct: 1915 ASYIPERTSSLQRQRLSEDSQTSLLSKPSSSIFQNWPKPPLPPLPTGSGVSSSTAAAPGA 1974 Query: 391 XXCSPASGCPTTAQLPGHQVHLR-HLVAAAPSSS 489 S +S +T L G + +R L+ APS S Sbjct: 1975 TSPSASSASASTRHLQGVEFEMRPPLLRRAPSPS 2008
>SSPO_BOVIN (P98167) SCO-spondin (Fragment)| Length = 867 Score = 29.6 bits (65), Expect = 4.7 Identities = 17/55 (30%), Positives = 19/55 (34%), Gaps = 2/55 (3%) Frame = +1 Query: 262 SWTLWTRTSAPASSPTARW--CRPPTTGXXXXXXXXXXXXXXXXXXXCSPASGCP 420 SW+ W+ S P TAR C PP G C P GCP Sbjct: 34 SWSRWSPCSEPCGGVTARHRECHPPQNGGRTCATLPGGPPSTRETRPC-PQDGCP 87
>CIC_MOUSE (Q924A2) Protein capicua homolog| Length = 1606 Score = 29.3 bits (64), Expect = 6.2 Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 1/82 (1%) Frame = +1 Query: 97 RSSRSHCQ-SLET*PAGCMAKRNPVATTXXXXXXXASSEPWPAGGASSTARTRGMGSWTL 273 RSS +HC+ +L+ P G +P A SS PA + S + + +GS T Sbjct: 500 RSSFTHCRPTLDPEPPG---PPDPPAAFSKGYGPTPSSSSSPASTSVSVSTSFSLGSGTF 556 Query: 274 WTRTSAPASSPTARWCRPPTTG 339 T+ S S TA RPP G Sbjct: 557 KTQESGQGS--TAVPLRPPPPG 576
>ARGD_SYNEL (P59322) Acetylornithine aminotransferase (EC 2.6.1.11) (ACOAT)| Length = 412 Score = 28.9 bits (63), Expect = 8.1 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = -1 Query: 341 EPVVGGLHHLAVGDDAGAEVRVQRVQEPIPRVLAVELAPPAGHG 210 +P+V G ++ D E V + +P P+V A+ L P G G Sbjct: 163 DPLVPGFAYVPYNDLGALEALVASLDQPQPQVAAILLEPLQGEG 206
>ARGD_ANASP (P54752) Acetylornithine aminotransferase (EC 2.6.1.11) (ACOAT)| Length = 427 Score = 28.9 bits (63), Expect = 8.1 Identities = 13/44 (29%), Positives = 22/44 (50%) Frame = -1 Query: 341 EPVVGGLHHLAVGDDAGAEVRVQRVQEPIPRVLAVELAPPAGHG 210 +P+V G H++ D + E + + E RV A+ + P G G Sbjct: 178 DPLVPGFHYVNYNDISAVEAAISELDEGDYRVAAILIEPLQGEG 221
>AMC1_ORYSA (P27940) Alpha-amylase isozyme C (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) (Isozyme 1B) Length = 348 Score = 28.9 bits (63), Expect = 8.1 Identities = 32/113 (28%), Positives = 41/113 (36%), Gaps = 13/113 (11%) Frame = +1 Query: 31 RRQW*AAHRSRRSHELTPRAPCRSSR----SHCQSLET*PAGCMAKRNPVATTXXXXXXX 198 RR HR R S T + SS S S T A + P Sbjct: 149 RRHRKPGHRRRTSTTSTSASSGSSSAGSTGSRWTSASTRGASTSPRATPPTWQRSTSMPP 208 Query: 199 ASSEPWP--------AGGAS-STARTRGMGSWTLWTRTSAPASSPTARWCRPP 330 + + PWP AG AS +T RTR SW+ + SA ++ R PP Sbjct: 209 SRASPWPRYGRRWRTAGTASRTTTRTRTGRSWSTGSIVSAAPTAMPRRSTSPP 261
>MYCL1_MOUSE (P10166) L-myc-1 proto-oncogene protein| Length = 368 Score = 28.9 bits (63), Expect = 8.1 Identities = 14/37 (37%), Positives = 15/37 (40%) Frame = +1 Query: 208 EPWPAGGASSTARTRGMGSWTLWTRTSAPASSPTARW 318 EPWP GGA A +RG W R A W Sbjct: 62 EPWPGGGAGDEAESRGHSK--AWGRNYASIIRRDCMW 96
>DIP2C_HUMAN (Q9Y2E4) Disco-interacting protein 2 homolog C| Length = 1556 Score = 28.9 bits (63), Expect = 8.1 Identities = 16/50 (32%), Positives = 20/50 (40%) Frame = +2 Query: 8 SQQSQTLLAGSGRQHIDREGPTN*HLARHVVPPDPTANRWRHSQQAAWPR 157 + S T GSG H + H+ H PPD T HS Q P+ Sbjct: 176 TSSSSTQSGGSGAAHRLADVMAQTHIENHSAPPDVTTYTSEHSIQVERPQ 225 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,927,181 Number of Sequences: 219361 Number of extensions: 1429571 Number of successful extensions: 4566 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 4378 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4560 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3581144924 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
