ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast77c01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CJ022_MOUSE (Q6PDY2) Protein C10orf22 homolog 38 0.007
2CJ022_HUMAN (Q96SZ5) Protein C10orf22 36 0.025
3BCL9_DROME (Q961D9) Bcl-9 homolog (Protein legless) 29 2.3
4COPA_BACSU (O32220) Copper-transporting P-type ATPase copA (EC 3... 28 6.8

>CJ022_MOUSE (Q6PDY2) Protein C10orf22 homolog|
          Length = 256

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 21/64 (32%), Positives = 35/64 (54%)
 Frame = +3

Query: 210 APGFVPPPDAVARLAAILNDLKSQDVGIDASMTCFKRSDSRASPAVTYLHFYDCSKXSFG 389
           APGF   P+ ++ L ++L  ++++D+ I A      +   R  P VTY+H Y+    S G
Sbjct: 32  APGF---PENLSLLKSLLTQVRAEDLNI-APRKALPQPLPRNLPPVTYMHIYETEGFSLG 87

Query: 390 IFCL 401
           +F L
Sbjct: 88  VFLL 91



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>CJ022_HUMAN (Q96SZ5) Protein C10orf22|
          Length = 270

 Score = 35.8 bits (81), Expect = 0.025
 Identities = 19/63 (30%), Positives = 33/63 (52%)
 Frame = +3

Query: 213 PGFVPPPDAVARLAAILNDLKSQDVGIDASMTCFKRSDSRASPAVTYLHFYDCSKXSFGI 392
           PGF   P+ +++L ++L  L+++D+ I       +       P VTY+H Y+    S G+
Sbjct: 45  PGF---PENLSKLKSLLTQLRAEDLNIAPRKATLQPLPPNLPP-VTYMHIYETDGFSLGV 100

Query: 393 FCL 401
           F L
Sbjct: 101 FLL 103



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>BCL9_DROME (Q961D9) Bcl-9 homolog (Protein legless)|
          Length = 1469

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 159  SPMQRLFDTSREV-FSASAPGFVPPPDAVARLAAILNDLKSQDVGI 293
            SP+  L + +++V F+AS+PGF P P   +   + LN  K     I
Sbjct: 911  SPVNSLIEANKDVRFAASSPGFNPHPHMQSNSNSALNAYKMGSTNI 956



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>COPA_BACSU (O32220) Copper-transporting P-type ATPase copA (EC 3.6.3.-)|
           (Protein copA)
          Length = 803

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -1

Query: 383 RXLGAVVEMQIGDSRRRPRVAALEAGHACVYANIL 279
           + LG  V M  GD+RR     A EAG A + A +L
Sbjct: 642 KELGLDVIMMTGDNRRTAEAIAKEAGIANIIAEVL 676


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,213,308
Number of Sequences: 219361
Number of extensions: 337309
Number of successful extensions: 1426
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1426
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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