ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast77b08 |
|---|---|
| Clone Library Name | barley_pub |
>HMT1_MAIZE (Q9FUN0) Homocysteine S-methyltransferase 1 (EC 2.1.1.10)| (S-methylmethionine:homocysteine methyltransferase 1) (SMM:Hcy S-methyltransferase 1) (ZmHMT-1) Length = 323 Score = 186 bits (471), Expect(2) = 3e-50 Identities = 91/115 (79%), Positives = 98/115 (85%) Frame = +1 Query: 106 GVVEELVKKAGGCAVIDGGFATQLEALGADINDPLWSAACLITKPHLIKEVHMQYLEAGA 285 GV+E+LV +AGGCAVIDGGFATQLEALGADINDPLWSAACLIT+PHL+KEVHMQYLEAGA Sbjct: 2 GVLEDLVARAGGCAVIDGGFATQLEALGADINDPLWSAACLITRPHLVKEVHMQYLEAGA 61 Query: 286 DVIISSSYQATIPGFXXXXXXXXXXXXXXXTSVQLALEARDEFWKSTLRKSKPVY 450 DVIISSSYQATIPGF TSV+LA EARDEFWKSTLRKSKP+Y Sbjct: 62 DVIISSSYQATIPGFIARGMSVAEAEDLLRTSVKLANEARDEFWKSTLRKSKPIY 116 Score = 32.0 bits (71), Expect(2) = 3e-50 Identities = 14/16 (87%), Positives = 16/16 (100%) Frame = +3 Query: 450 HRALVAASVGSYGAYL 497 +RALVAAS+GSYGAYL Sbjct: 117 NRALVAASIGSYGAYL 132
>HMT1_ARATH (Q9SDL7) Homocysteine S-methyltransferase 1 (EC 2.1.1.10)| (S-methylmethionine:homocysteine methyltransferase 1) (SMM:Hcy S-methyltransferase 1) (AtHMT-1) Length = 326 Score = 137 bits (346), Expect(2) = 7e-36 Identities = 66/114 (57%), Positives = 80/114 (70%) Frame = +1 Query: 109 VVEELVKKAGGCAVIDGGFATQLEALGADINDPLWSAACLITKPHLIKEVHMQYLEAGAD 288 ++E+L+KK GGCAV+DGGFATQLE GA INDPLWSA LI P LIK VHM+YLEAGAD Sbjct: 9 LLEDLIKKCGGCAVVDGGFATQLEIHGAAINDPLWSAVSLIKNPELIKRVHMEYLEAGAD 68 Query: 289 VIISSSYQATIPGFXXXXXXXXXXXXXXXTSVQLALEARDEFWKSTLRKSKPVY 450 ++++SSYQATIPGF SV+LA+EARD FW+ + S Y Sbjct: 69 IVVTSSYQATIPGFLSRGLSIEESESLLQKSVELAVEARDRFWEKVSKVSGHSY 122 Score = 32.0 bits (71), Expect(2) = 7e-36 Identities = 14/16 (87%), Positives = 16/16 (100%) Frame = +3 Query: 450 HRALVAASVGSYGAYL 497 +RALVAAS+GSYGAYL Sbjct: 123 NRALVAASIGSYGAYL 138
>HMT2_MAIZE (Q9FUM9) Homocysteine S-methyltransferase 2 (EC 2.1.1.10)| (S-methylmethionine:homocysteine methyltransferase 2) (SMM:Hcy S-methyltransferase 2) (ZmHMT-2) Length = 339 Score = 126 bits (316), Expect(2) = 1e-31 Identities = 64/118 (54%), Positives = 81/118 (68%), Gaps = 4/118 (3%) Frame = +1 Query: 106 GVVEELVKK----AGGCAVIDGGFATQLEALGADINDPLWSAACLITKPHLIKEVHMQYL 273 G EE V++ AGG V+DGG AT+LEA GAD+NDPLWSA CL++ PHLI++VHM YL Sbjct: 7 GSAEEAVRRWVDAAGGRLVLDGGLATELEANGADLNDPLWSAKCLLSSPHLIRKVHMDYL 66 Query: 274 EAGADVIISSSYQATIPGFXXXXXXXXXXXXXXXTSVQLALEARDEFWKSTLRKSKPV 447 EAGA++II++SYQATI GF SV++ALEAR+ F K L KS P+ Sbjct: 67 EAGANIIITASYQATIQGFESKGFSKEQSENLLTKSVEIALEAREMFLKEHLEKSTPI 124 Score = 29.6 bits (65), Expect(2) = 1e-31 Identities = 13/16 (81%), Positives = 14/16 (87%) Frame = +3 Query: 450 HRALVAASVGSYGAYL 497 H LVAAS+GSYGAYL Sbjct: 126 HPVLVAASLGSYGAYL 141
>HMT3_MAIZE (Q9FUM8) Homocysteine S-methyltransferase 3 (EC 2.1.1.10)| (S-methylmethionine:homocysteine methyltransferase 3) (SMM:Hcy S-methyltransferase 3) (ZmHMT-3) Length = 338 Score = 127 bits (318), Expect(2) = 2e-31 Identities = 66/120 (55%), Positives = 80/120 (66%), Gaps = 2/120 (1%) Frame = +1 Query: 94 AMGGG--VVEELVKKAGGCAVIDGGFATQLEALGADINDPLWSAACLITKPHLIKEVHMQ 267 A GG V V AGG V+DGG AT+LEA GAD+NDPLWSA CL++ PHLI++VHM Sbjct: 5 AEGGAERAVRRWVDAAGGRLVLDGGLATELEANGADLNDPLWSAKCLLSSPHLIRKVHMD 64 Query: 268 YLEAGADVIISSSYQATIPGFXXXXXXXXXXXXXXXTSVQLALEARDEFWKSTLRKSKPV 447 YLEAGA++II++SYQATI GF SVQ+ALEAR+ F K L KS P+ Sbjct: 65 YLEAGANIIITASYQATIQGFESKGFSKEQSENLLTKSVQIALEAREMFLKEHLEKSTPI 124 Score = 28.1 bits (61), Expect(2) = 2e-31 Identities = 12/16 (75%), Positives = 14/16 (87%) Frame = +3 Query: 450 HRALVAASVGSYGAYL 497 H LVAA++GSYGAYL Sbjct: 126 HPILVAAALGSYGAYL 141
>HMT3_ARATH (Q8LAX0) Homocysteine S-methyltransferase 3 (EC 2.1.1.10)| (S-methylmethionine:homocysteine methyltransferase 3) (SMM:Hcy S-methyltransferase 3) (AtHMT-3) Length = 347 Score = 117 bits (293), Expect(2) = 9e-29 Identities = 58/123 (47%), Positives = 80/123 (65%), Gaps = 1/123 (0%) Frame = +1 Query: 109 VVEELVKKAGGCAVIDGGFATQLEALGADINDPLWSAACLITKPHLIKEVHMQYLEAGAD 288 ++ + ++K GG AV+DGGFAT+L+ GADINDPLWSA CLIT PHL+ +VH+ YLE+GA+ Sbjct: 12 LMTDFLEKCGGYAVVDGGFATELQRHGADINDPLWSAKCLITSPHLVTKVHLDYLESGAN 71 Query: 289 VIISSSYQATIPGFXXXXXXXXXXXXXXXTSVQLALEARDEFWKSTLRKSKP-VYTAPSS 465 +II++SYQATI GF SV++ EAR+ F+ + S Y +S Sbjct: 72 IIITASYQATIQGFVAKGLSVGEAENLLRRSVEITYEAREIFYNRCTKGSWDFAYAGKAS 131 Query: 466 PRP 474 RP Sbjct: 132 RRP 134 Score = 28.5 bits (62), Expect(2) = 9e-29 Identities = 13/13 (100%), Positives = 13/13 (100%) Frame = +3 Query: 459 LVAASVGSYGAYL 497 LVAASVGSYGAYL Sbjct: 136 LVAASVGSYGAYL 148
>HMT2_ARATH (Q9M1W4) Homocysteine S-methyltransferase 2 (EC 2.1.1.10)| (S-methylmethionine:homocysteine methyltransferase 2) (SMM:Hcy S-methyltransferase 2) (AtHMT-2) Length = 333 Score = 115 bits (288), Expect(2) = 3e-28 Identities = 58/126 (46%), Positives = 77/126 (61%), Gaps = 9/126 (7%) Frame = +1 Query: 112 VEELVKKAGGCAVIDGGFATQLEALGADINDPLWSAACLITKPHLIKEVHMQYLEAGADV 291 +++ +K+ GG AVIDGG AT+ E GAD+NDPLWSA CL+T PHLI VH+ YLEAGAD+ Sbjct: 9 MKDFLKQTGGYAVIDGGLATEFERHGADLNDPLWSAKCLVTSPHLIHTVHLDYLEAGADI 68 Query: 292 IISSSYQATIPGFXXXXXXXXXXXXXXXTSVQLALEARDEFW---------KSTLRKSKP 444 I S+SYQATI GF SV++A EAR+ ++ + K +P Sbjct: 69 ISSASYQATIQGFEAKGFSREESESLLKKSVEIATEARNSYYDKCGTSSSMDDKILKKRP 128 Query: 445 VYTAPS 462 + A S Sbjct: 129 ILVAAS 134 Score = 28.5 bits (62), Expect(2) = 3e-28 Identities = 13/13 (100%), Positives = 13/13 (100%) Frame = +3 Query: 459 LVAASVGSYGAYL 497 LVAASVGSYGAYL Sbjct: 130 LVAASVGSYGAYL 142
>HMT4_MAIZE (Q9FUM7) Homocysteine S-methyltransferase 4 (EC 2.1.1.10)| (S-methylmethionine:homocysteine methyltransferase 4) (SMM:Hcy S-methyltransferase 4) (ZmHMT-4) Length = 342 Score = 115 bits (289), Expect = 5e-26 Identities = 59/112 (52%), Positives = 73/112 (65%) Frame = +1 Query: 106 GVVEELVKKAGGCAVIDGGFATQLEALGADINDPLWSAACLITKPHLIKEVHMQYLEAGA 285 G + V++AGGCAV+DGG T+LEA GAD++D LWSA CL + PHLI++VH+ YLEAGA Sbjct: 12 GALRGFVREAGGCAVVDGGLGTELEAHGADLHDALWSAKCLASAPHLIRKVHLDYLEAGA 71 Query: 286 DVIISSSYQATIPGFXXXXXXXXXXXXXXXTSVQLALEARDEFWKSTLRKSK 441 DVIIS+SYQATI GF SV +A EAR F R S+ Sbjct: 72 DVIISASYQATIEGFQSRGFSRDESEELLRRSVHVAQEARRVFAAEGDRSSR 123 Score = 28.9 bits (63), Expect = 7.9 Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 1/31 (3%) Frame = +3 Query: 405 RRVLEVDAEEVEARLHR-ALVAASVGSYGAY 494 RRV + + R ALVAASVGSYGAY Sbjct: 111 RRVFAAEGDRSSRRGRPPALVAASVGSYGAY 141
>SMTA_ASTBI (P56707) Selenocysteine methyltransferase (EC 2.1.1.-)| (SECYS-methyltransferase) (SECYS-MT) Length = 338 Score = 108 bits (269), Expect(2) = 2e-25 Identities = 52/114 (45%), Positives = 73/114 (64%) Frame = +1 Query: 97 MGGGVVEELVKKAGGCAVIDGGFATQLEALGADINDPLWSAACLITKPHLIKEVHMQYLE 276 M ++ + + +AG AVI GG T+L+ GAD+NDPLWSA CL++ PHLI++VH+ YLE Sbjct: 1 MSSPLITDFLHQAGRAAVIAGGLGTELQRHGADLNDPLWSAKCLLSCPHLIRQVHLDYLE 60 Query: 277 AGADVIISSSYQATIPGFXXXXXXXXXXXXXXXTSVQLALEARDEFWKSTLRKS 438 GAD+II++SYQATI GF SV++A EARD +++ S Sbjct: 61 NGADIIITASYQATIQGFKAKGFSDEEGEALLRRSVEIAREARDLYYQRCAESS 114 Score = 26.6 bits (57), Expect(2) = 2e-25 Identities = 11/13 (84%), Positives = 12/13 (92%) Frame = +3 Query: 459 LVAASVGSYGAYL 497 L+A SVGSYGAYL Sbjct: 130 LIAGSVGSYGAYL 142
>MMUM_ECOLI (Q47690) Homocysteine S-methyltransferase (EC 2.1.1.10)| (S-methylmethionine:homocysteine methyltransferase) Length = 310 Score = 77.0 bits (188), Expect(2) = 1e-15 Identities = 38/89 (42%), Positives = 52/89 (58%) Frame = +1 Query: 148 VIDGGFATQLEALGADINDPLWSAACLITKPHLIKEVHMQYLEAGADVIISSSYQATIPG 327 ++DG AT+LEA G ++ D LWSA L+ P LI+EVH+ Y AGA I++SYQAT G Sbjct: 18 LLDGAMATELEARGCNLADSLWSAKVLVENPELIREVHLDYYRAGAQCAITASYQATPAG 77 Query: 328 FXXXXXXXXXXXXXXXTSVQLALEARDEF 414 F SV+LA +AR+ + Sbjct: 78 FAARGLDEAQSKALIGKSVELARKAREAY 106 Score = 25.0 bits (53), Expect(2) = 1e-15 Identities = 11/13 (84%), Positives = 11/13 (84%) Frame = +3 Query: 459 LVAASVGSYGAYL 497 LVA SVG YGAYL Sbjct: 117 LVAGSVGPYGAYL 129
>MHT1_YEAST (Q12525) Homocysteine S-methyltransferase 1 (EC 2.1.1.10)| (S-methylmethionine:homocysteine methyltransferase 1) (SMM:Hcy S-methyltransferase 1) Length = 324 Score = 49.3 bits (116), Expect = 6e-06 Identities = 24/78 (30%), Positives = 47/78 (60%), Gaps = 9/78 (11%) Frame = +1 Query: 109 VVEELVKKAGGCAVIDGGFATQLEALGADINDPLWSAACLITKP---------HLIKEVH 261 + E +V+ G ++DGG T+LE G +IN P+WSAA ++ +++E++ Sbjct: 6 IKELIVEHPGKVLILDGGQGTELENRGININSPVWSAAPFTSESFWEPSSQERKVVEEMY 65 Query: 262 MQYLEAGADVIISSSYQA 315 ++ AGA+++++ +YQA Sbjct: 66 RDFMIAGANILMTITYQA 83
>METH_VIBVY (Q7MHB1) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent isozyme) (MS) Length = 1226 Score = 43.9 bits (102), Expect = 2e-04 Identities = 26/77 (33%), Positives = 41/77 (53%) Frame = +1 Query: 226 LITKPHLIKEVHMQYLEAGADVIISSSYQATIPGFXXXXXXXXXXXXXXXTSVQLALEAR 405 ++T+P LIKE+H YLEAGAD++ ++++ AT + +LA EA Sbjct: 58 VLTQPQLIKEIHHAYLEAGADILETNTFNATTIAM-ADYDMESLSEEINFAAAKLAREAA 116 Query: 406 DEFWKSTLRKSKPVYTA 456 DE+ + +KP Y A Sbjct: 117 DEW--TAKNPAKPRYVA 131
>METH_VIBVU (Q8DCJ7) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent isozyme) (MS) Length = 1226 Score = 43.9 bits (102), Expect = 2e-04 Identities = 26/77 (33%), Positives = 41/77 (53%) Frame = +1 Query: 226 LITKPHLIKEVHMQYLEAGADVIISSSYQATIPGFXXXXXXXXXXXXXXXTSVQLALEAR 405 ++T+P LIKE+H YLEAGAD++ ++++ AT + +LA EA Sbjct: 58 VLTQPQLIKEIHHAYLEAGADILETNTFNATTIAM-ADYDMESLSEEINFAAARLAREAA 116 Query: 406 DEFWKSTLRKSKPVYTA 456 DE+ + +KP Y A Sbjct: 117 DEW--TAQNPAKPRYVA 131
>METH_VIBPA (Q87L95) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent isozyme) (MS) Length = 1226 Score = 42.7 bits (99), Expect = 5e-04 Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 13/116 (11%) Frame = +1 Query: 148 VIDGGFATQLEALGADIND------PLWSA-------ACLITKPHLIKEVHMQYLEAGAD 288 +IDGG T ++ + D W ++++P LIKE+H YLEAGAD Sbjct: 19 LIDGGMGTMIQGYKLEEQDYRGERFANWHCDLKGNNDLLVLSQPQLIKEIHSAYLEAGAD 78 Query: 289 VIISSSYQATIPGFXXXXXXXXXXXXXXXTSVQLALEARDEFWKSTLRKSKPVYTA 456 ++ ++++ AT + +LA E DE+ T KP Y A Sbjct: 79 ILETNTFNATTIAM-ADYEMESLSEEINFAAAKLAREVADEWTAKT--PDKPRYVA 131
>SAM4_YEAST (Q08985) Homocysteine S-methyltransferase 2 (EC 2.1.1.10)| (S-methylmethionine:homocysteine methyltransferase 2) (SMM:Hcy S-methyltransferase 2) (S-adenosylmethionine metabolism protein 4) Length = 325 Score = 42.7 bits (99), Expect = 5e-04 Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 10/67 (14%) Frame = +1 Query: 148 VIDGGFATQLEALGADINDPLWSAACLITKP----------HLIKEVHMQYLEAGADVII 297 V+DGG T+LE G + +P+WS I++ ++KE+ +L AGA++++ Sbjct: 19 VLDGGQGTELENRGIKVANPVWSTIPFISESFWSDESSANRKIVKEMFNDFLNAGAEILM 78 Query: 298 SSSYQAT 318 +++YQ + Sbjct: 79 TTTYQTS 85
>METH_VIBCH (Q9KUW9) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent isozyme) (MS) Length = 1226 Score = 40.8 bits (94), Expect = 0.002 Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 15/118 (12%) Frame = +1 Query: 148 VIDGGFATQLEAL--------GADINDPLWSA-------ACLITKPHLIKEVHMQYLEAG 282 +IDGG T +++ GA D W ++T+P +IKE+H YLEAG Sbjct: 19 LIDGGMGTMIQSYKLQEEDYRGARFVD--WHCDLKGNNDLLVLTQPQIIKEIHSAYLEAG 76 Query: 283 ADVIISSSYQATIPGFXXXXXXXXXXXXXXXTSVQLALEARDEFWKSTLRKSKPVYTA 456 AD++ ++++ +T + +LA E DE+ + S+P Y A Sbjct: 77 ADILETNTFNSTTIAM-ADYDMQSLSAEINFAAAKLAREVADEW--TAKDPSRPRYVA 131
>METH_VIBFI (Q9AJQ8) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent isozyme) (MS) Length = 1226 Score = 38.1 bits (87), Expect = 0.013 Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 13/116 (11%) Frame = +1 Query: 148 VIDGGFATQLEALGADIND------PLWSA-------ACLITKPHLIKEVHMQYLEAGAD 288 +IDGG T ++ + D W ++++P +I+++H YLEAGAD Sbjct: 20 LIDGGMGTMIQGYKFEEKDYRGGRFNQWHCDLKGNNDLLVLSQPQIIRDIHEAYLEAGAD 79 Query: 289 VIISSSYQATIPGFXXXXXXXXXXXXXXXTSVQLALEARDEFWKSTLRKSKPVYTA 456 ++ ++++ AT + +LA E D++ + T +KP Y A Sbjct: 80 ILETNTFNATTIAM-ADYDMESLSEEINFEAAKLAREVADKWTEKT--PNKPRYVA 132
>METH_VIBF1 (Q5E814) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent isozyme) (MS) Length = 1226 Score = 38.1 bits (87), Expect = 0.013 Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 13/116 (11%) Frame = +1 Query: 148 VIDGGFATQLEALGADIND------PLWSA-------ACLITKPHLIKEVHMQYLEAGAD 288 +IDGG T ++ + D W ++++P +I+++H YLEAGAD Sbjct: 20 LIDGGMGTMIQGYKFEEEDYRGERFNKWHCDLKGNNDLLVLSQPQIIRDIHEAYLEAGAD 79 Query: 289 VIISSSYQATIPGFXXXXXXXXXXXXXXXTSVQLALEARDEFWKSTLRKSKPVYTA 456 ++ ++++ AT + +LA E D++ + T +KP Y A Sbjct: 80 ILETNTFNATTIAM-ADYDMESLSEEINFEAAKLAREVADKWTEKT--PNKPRYVA 132
>METH_MYCTU (O33259) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent isozyme) (MS) Length = 1192 Score = 34.7 bits (78), Expect = 0.14 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%) Frame = +1 Query: 154 DGGFATQLEALGADINDPLWSAACLI----TKPHLIKEVHMQYLEAGADVIISSSY 309 DG TQL+A ++D C T+P +++ +H Y EAGAD + ++++ Sbjct: 25 DGAMGTQLQAADLTLDDFRGLEGCNEILNETRPDVLETIHRNYFEAGADAVETNTF 80
>METH_HUMAN (Q99707) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent) (MS) Length = 1265 Score = 34.3 bits (77), Expect = 0.19 Identities = 13/30 (43%), Positives = 24/30 (80%) Frame = +1 Query: 229 ITKPHLIKEVHMQYLEAGADVIISSSYQAT 318 IT+P +I ++H +YL AGAD+I ++++ +T Sbjct: 72 ITQPDVIYQIHKEYLLAGADIIETNTFSST 101
>METH_CAEEL (Q09582) Probable methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent) (MS) Length = 1249 Score = 33.9 bits (76), Expect = 0.25 Identities = 13/30 (43%), Positives = 22/30 (73%) Frame = +1 Query: 229 ITKPHLIKEVHMQYLEAGADVIISSSYQAT 318 IT+P +I ++H YLEAGAD + ++++ T Sbjct: 60 ITRPDIIYKIHKLYLEAGADFVETNTFSGT 89
>METH_SALTY (P37586) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent isozyme) (MS) Length = 1226 Score = 33.5 bits (75), Expect = 0.32 Identities = 12/31 (38%), Positives = 23/31 (74%) Frame = +1 Query: 226 LITKPHLIKEVHMQYLEAGADVIISSSYQAT 318 +++KP +I +H Y EAGAD+I ++++ +T Sbjct: 56 VLSKPEVIAAIHNAYFEAGADIIETNTFNST 86
>METH_ECOLI (P13009) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12-dependent isozyme) (MS) Length = 1226 Score = 33.5 bits (75), Expect = 0.32 Identities = 12/31 (38%), Positives = 23/31 (74%) Frame = +1 Query: 226 LITKPHLIKEVHMQYLEAGADVIISSSYQAT 318 +++KP +I +H Y EAGAD+I ++++ +T Sbjct: 56 VLSKPEVIAAIHNAYFEAGADIIETNTFNST 86
>METH_MYCLE (Q49775) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent isozyme) (MS) Length = 1206 Score = 32.7 bits (73), Expect = 0.55 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Frame = +1 Query: 154 DGGFATQLEALGADINDPLWSAACLI----TKPHLIKEVHMQYLEAGADVIISSSY 309 DG TQL+ ++D C T+P +++ +H +Y EAGAD++ ++++ Sbjct: 27 DGAMGTQLQDAELTLDDFRGLEGCNEILNETRPDVLETIHRRYFEAGADLVETNTF 82
>METH_PSEPU (O33465) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent isozyme) (MS) (Fragment) Length = 607 Score = 32.7 bits (73), Expect = 0.55 Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 13/70 (18%) Frame = +1 Query: 148 VIDGGFATQLEALGADINDPL------WSA-------ACLITKPHLIKEVHMQYLEAGAD 288 ++DGG T +++ + +D W + L+++P +I + YL+AGAD Sbjct: 21 ILDGGMGTMIQSYRLEEHDYRGTRFADWPSDVKGNNDLLLLSRPDVIAAIEKAYLDAGAD 80 Query: 289 VIISSSYQAT 318 ++ ++++ AT Sbjct: 81 ILETNTFNAT 90
>AMELY_PANTR (Q861X8) Amelogenin, Y isoform precursor (Fragment)| Length = 203 Score = 30.8 bits (68), Expect = 2.1 Identities = 14/46 (30%), Positives = 23/46 (50%) Frame = +3 Query: 228 HHQAAPHQGGPYAVS*SWRRRHHLLVLPGNYPGVPGQRTAPRGGRR 365 HHQ P + ++ + + HH+ V+P P VP Q P G++ Sbjct: 77 HHQIIPVVSQQHPLTHTLQSHHHIPVVPAQQPRVPQQAMMPVPGQQ 122
>METH_SYNY3 (Q55786) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent isozyme) (MS) Length = 1195 Score = 30.8 bits (68), Expect = 2.1 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 6/63 (9%) Frame = +1 Query: 148 VIDGGFATQLEA---LGADINDPLWSAA---CLITKPHLIKEVHMQYLEAGADVIISSSY 309 V DG T L+ AD + + TKP + VH + EAGADV+ + ++ Sbjct: 18 VFDGAMGTNLQVQNLTAADFGGAEYEGCNEYLVHTKPEAVATVHRAFYEAGADVVETDTF 77 Query: 310 QAT 318 T Sbjct: 78 GGT 80
>AMEL_PIG (P45561) Amelogenin precursor (Amelogenin 173A/173B) (Leucine-rich| amelogenin peptide) (LRAP) Length = 189 Score = 30.0 bits (66), Expect = 3.6 Identities = 14/45 (31%), Positives = 21/45 (46%) Frame = +3 Query: 228 HHQAAPHQGGPYAVS*SWRRRHHLLVLPGNYPGVPGQRTAPRGGR 362 HHQ P S + + HH+ ++P PG+P Q P G+ Sbjct: 63 HHQIIPVVSQQTPQSHALQPHHHIPMVPAQQPGIPQQPMMPLPGQ 107
>EPS8_MOUSE (Q08509) Epidermal growth factor receptor kinase substrate 8| Length = 821 Score = 30.0 bits (66), Expect = 3.6 Identities = 12/23 (52%), Positives = 17/23 (73%) Frame = -3 Query: 76 YTLAQSTARSQHQAQQDSRRAKT 8 Y LA+S A ++HQ +QDS+R T Sbjct: 454 YQLAESVANAEHQRKQDSKRLST 476
>VE2_HPV41 (P27552) Regulatory protein E2| Length = 387 Score = 29.6 bits (65), Expect = 4.7 Identities = 17/57 (29%), Positives = 26/57 (45%) Frame = +3 Query: 309 PGNYPGVPGQRTAPRGGRRVTANQRPAGAGGPRRVLEVDAEEVEARLHRALVAASVG 479 P G G+R++P+ RR A+ G GG +++E HRAL + G Sbjct: 241 PKRRRGAYGRRSSPKAQRRTAASPVSRGNGGSSDFTSGESDEGHRVRHRALRKKTAG 297
>OPA_DROME (P39768) Pair-rule protein odd-paired| Length = 609 Score = 29.3 bits (64), Expect = 6.1 Identities = 18/46 (39%), Positives = 19/46 (41%), Gaps = 3/46 (6%) Frame = +3 Query: 228 HHQAAPHQGGPYAVS*SWRRRHHLLVLPGNYPGVPG---QRTAPRG 356 HHQAAP G A + HHLL P P TAP G Sbjct: 535 HHQAAPSPGAAAASASMLHHNHHLLYHPAAQHHPPSDWYHTTAPSG 580
>M2GD_MOUSE (Q9DBT9) Dimethylglycine dehydrogenase, mitochondrial precursor| (EC 1.5.99.2) (ME2GLYDH) Length = 869 Score = 29.3 bits (64), Expect = 6.1 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = -2 Query: 80 RLHACAKHGSISAPSAAGLEEGEDNP 3 RL A GS PS+AGL EG+++P Sbjct: 8 RLRGLALRGSPRRPSSAGLREGQESP 33
>CO1A2_BOVIN (P02465) Collagen alpha-2(I) chain precursor| Length = 1364 Score = 28.9 bits (63), Expect = 7.9 Identities = 14/33 (42%), Positives = 16/33 (48%) Frame = +3 Query: 309 PGNYPGVPGQRTAPRGGRRVTANQRPAGAGGPR 407 P +PG PG P+G N PAG GPR Sbjct: 252 PPGFPGAPG----PKGELGPVGNPGPAGPAGPR 280
>COEC_SCYCA (P81130) Egg case collagen (Fragments)| Length = 209 Score = 28.9 bits (63), Expect = 7.9 Identities = 16/35 (45%), Positives = 16/35 (45%) Frame = +3 Query: 300 LVLPGNYPGVPGQRTAPRGGRRVTANQRPAGAGGP 404 LVLP YPG PG PRGG G G P Sbjct: 128 LVLPAGYPGTPG-TPGPRGGPGDPGMPGEPGVGFP 161
>AMPN_RABIT (P15541) Aminopeptidase N (EC 3.4.11.2) (rbAPN) (Alanyl| aminopeptidase) (Microsomal aminopeptidase) (Aminopeptidase M) (CD13 antigen) Length = 965 Score = 28.9 bits (63), Expect = 7.9 Identities = 14/37 (37%), Positives = 23/37 (62%) Frame = +1 Query: 151 IDGGFATQLEALGADINDPLWSAACLITKPHLIKEVH 261 ++ GFA+ +E LGAD +P W+ LI ++ E+H Sbjct: 404 LNEGFASYVEYLGADYAEPTWNLKDLI----VLNELH 436
>SYH_CHLMU (Q9PJJ9) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 428 Score = 28.9 bits (63), Expect = 7.9 Identities = 20/55 (36%), Positives = 28/55 (50%) Frame = +1 Query: 100 GGGVVEELVKKAGGCAVIDGGFATQLEALGADINDPLWSAACLITKPHLIKEVHM 264 GGG +ELV ++GG A+ GF LE + I L A L T P ++ + M Sbjct: 289 GGGRYDELVAQSGGPAMPAFGFGVGLERV---IQTLLEQGAALPTAPRRLRLIPM 340
>CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor| Length = 1372 Score = 28.9 bits (63), Expect = 7.9 Identities = 14/33 (42%), Positives = 16/33 (48%) Frame = +3 Query: 309 PGNYPGVPGQRTAPRGGRRVTANQRPAGAGGPR 407 P +PG PG P+G N PAG GPR Sbjct: 260 PPGFPGAPG----PKGELGPVGNPGPAGPAGPR 288
>CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor| Length = 1372 Score = 28.9 bits (63), Expect = 7.9 Identities = 14/33 (42%), Positives = 16/33 (48%) Frame = +3 Query: 309 PGNYPGVPGQRTAPRGGRRVTANQRPAGAGGPR 407 P +PG PG P+G N PAG GPR Sbjct: 260 PPGFPGAPG----PKGELGPVGNPGPAGPAGPR 288 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.132 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,996,362 Number of Sequences: 219361 Number of extensions: 1182570 Number of successful extensions: 5368 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 4925 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5356 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3523384522 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
