ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast77b07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK104366.1| Oryza sativa (japonica cultivar-group) cDNA clon... 295 7e-77
2dbj|AK104199.1| Oryza sativa (japonica cultivar-group) cDNA clon... 295 7e-77
3dbj|AK070043.1| Oryza sativa (japonica cultivar-group) cDNA clon... 295 7e-77
4gb|AY104589.1| Zea mays PCO067801 mRNA sequence 254 2e-64
5gb|BT016325.1| Zea mays clone Contig158 mRNA sequence 252 9e-64
6gb|AC135418.3| Oryza sativa (japonica cultivar-group) chromosome... 131 2e-27
7gb|AC120991.3| Oryza sativa (japonica cultivar-group) chromosome... 131 2e-27
8dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 131 2e-27
9gb|AC162030.8| Medicago truncatula clone mth2-178b21, complete s... 58 3e-05
10gb|BT014050.1| Lycopersicon esculentum clone 133147F, mRNA sequence 56 1e-04
11ref|XM_476832.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.026
12dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.026
13dbj|AP003826.4| Oryza sativa (japonica cultivar-group) genomic D... 48 0.026
14dbj|AP004307.2| Oryza sativa (japonica cultivar-group) genomic D... 48 0.026
15dbj|AK073781.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.026
16dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 44 0.41
17ref|NM_001016838.2| Xenopus tropicalis hypothetical protein LOC5... 42 1.6
18gb|AY105221.1| Zea mays PCO086679 mRNA sequence 42 1.6
19emb|CR855480.2| Xenopus tropicalis finished cDNA, clone TNeu095j18 42 1.6
20gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence 40 6.3
21gb|AC116130.15| Mus musculus chromosome 17, clone RP23-98F21, co... 40 6.3
22gb|AC167969.2| Mus musculus BAC clone RP24-446H24 from chromosom... 40 6.3
23ref|XM_359291.3| PREDICTED: Mus musculus ring finger protein 39,... 40 6.3
24gb|AC129311.6| Mus musculus BAC clone RP24-404P10 from chromosom... 40 6.3
25ref|XM_849968.1| PREDICTED: Canis familiaris similar to Cylicin-... 40 6.3
26gb|AC122384.3| Mus musculus BAC clone RP24-63P8 from chromosome ... 40 6.3
27emb|AL161628.9| Human DNA sequence from clone RP11-31K16 on chro... 40 6.3
28emb|AL034348.5|HS84D21 Human DNA sequence from clone RP1-84D21 o... 40 6.3
29emb|AL445623.2|HS315I14 Homo sapiens chromosome 9 BAC RP11-315I1... 40 6.3
30emb|CR860476.1| Pongo pygmaeus mRNA; cDNA DKFZp459C011 (from clo... 40 6.3
31emb|CR858051.1| Pongo pygmaeus mRNA; cDNA DKFZp459H1130 (from cl... 40 6.3
32dbj|AP007162.1| Aspergillus oryzae RIB40 genomic DNA, SC102 40 6.3
33dbj|AK162607.1| Mus musculus 16 days neonate cerebellum cDNA, RI... 40 6.3
34gb|AF532114.1| Mus musculus strain 129/SvJ BAC clone citb544e14 ... 40 6.3
35gb|AF532112.1| Mus musculus strain 129/SvJ BAC clone citb20h22 f... 40 6.3
36gb|AC005960.1|AC005960 Mus musculus chromosome 17 BAC citb20h22 ... 40 6.3
37emb|CR956641.9| Mouse DNA sequence from clone RP23-77N9 on chrom... 40 6.3 
>dbj|AK104366.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-D07, full
           insert sequence
          Length = 1060

 Score =  295 bits (149), Expect = 7e-77
 Identities = 319/373 (85%), Gaps = 2/373 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cggcatcctctgcgcgcagctgctcctcaccaccgtcgtctccgccgtaaccgtcttcca 60
           ||||||||||  ||||||||||||||||||||||| |||||||||  | |||||| ||||
Sbjct: 260 cggcatcctcgccgcgcagctgctcctcaccaccgccgtctccgcgctcaccgtcctcca 319

                                                                       
Query: 61  ccccaccctcaacgccacgctctccaactcgcccgtcctggcgctcgtgctcgctgtcct 120
           |||||||||||||||||||||||||  ||| ||   ||| || ||||||||||| |||||
Sbjct: 320 ccccaccctcaacgccacgctctcctcctccccgaccctcgccctcgtgctcgccgtcct 379

                                                                       
Query: 121 ccccttcatcctgatgatcccattgta-catctatcagcacaggcacccgcacaatcttg 179
           ||||||| |||||||| |||||||||| ||| ||||||||||  ||||| |||||  |||
Sbjct: 380 ccccttcgtcctgatggtcccattgtatcat-tatcagcacaaacacccacacaactttg 438

                                                                       
Query: 180 ctatcttgggtttgttcactctgtgcttgagcttcagcattggtgtggcttgtgcaaaca 239
            |  | ||||| |||||||  |||||||||| ||||| ||||||||||| ||||| ||||
Sbjct: 439 tttacctgggtctgttcacgttgtgcttgagtttcagtattggtgtggcatgtgctaaca 498

                                                                       
Query: 240 ctgaaggaaccattgtgcttcaggctttggtactgacctcagctgtggttgtctctctga 299
           || |||| |  ||||||||| |||| ||  || |||||||||||||||||| |||| |||
Sbjct: 499 ctcaagggaaaattgtgcttgaggcattaatattgacctcagctgtggttgcctctttga 558

                                                                       
Query: 300 ctgcgtacacattctgggcttcaaagaagggcaaggaatttagttaccttggaccatttc 359
           ||||||| || |||||||||||||||||||| || |||||| |||| ||||||||| |||
Sbjct: 559 ctgcgtatactttctgggcttcaaagaaggggaaagaatttggttatcttggaccaattc 618

                        
Query: 360 tgttttctgctct 372
           |||||||||||||
Sbjct: 619 tgttttctgctct 631
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>dbj|AK104199.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-A08, full
           insert sequence
          Length = 1060

 Score =  295 bits (149), Expect = 7e-77
 Identities = 319/373 (85%), Gaps = 2/373 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cggcatcctctgcgcgcagctgctcctcaccaccgtcgtctccgccgtaaccgtcttcca 60
           ||||||||||  ||||||||||||||||||||||| |||||||||  | |||||| ||||
Sbjct: 260 cggcatcctcgccgcgcagctgctcctcaccaccgccgtctccgcgctcaccgtcctcca 319

                                                                       
Query: 61  ccccaccctcaacgccacgctctccaactcgcccgtcctggcgctcgtgctcgctgtcct 120
           |||||||||||||||||||||||||  ||| ||   ||| || ||||||||||| |||||
Sbjct: 320 ccccaccctcaacgccacgctctcctcctccccgaccctcgccctcgtgctcgccgtcct 379

                                                                       
Query: 121 ccccttcatcctgatgatcccattgta-catctatcagcacaggcacccgcacaatcttg 179
           ||||||| |||||||| |||||||||| ||| ||||||||||  ||||| |||||  |||
Sbjct: 380 ccccttcgtcctgatggtcccattgtatcat-tatcagcacaaacacccacacaactttg 438

                                                                       
Query: 180 ctatcttgggtttgttcactctgtgcttgagcttcagcattggtgtggcttgtgcaaaca 239
            |  | ||||| |||||||  |||||||||| ||||| ||||||||||| ||||| ||||
Sbjct: 439 tttacctgggtctgttcacgttgtgcttgagtttcagtattggtgtggcatgtgctaaca 498

                                                                       
Query: 240 ctgaaggaaccattgtgcttcaggctttggtactgacctcagctgtggttgtctctctga 299
           || |||| |  ||||||||| |||| ||  || |||||||||||||||||| |||| |||
Sbjct: 499 ctcaagggaaaattgtgcttgaggcattaatattgacctcagctgtggttgcctctttga 558

                                                                       
Query: 300 ctgcgtacacattctgggcttcaaagaagggcaaggaatttagttaccttggaccatttc 359
           ||||||| || |||||||||||||||||||| || |||||| |||| ||||||||| |||
Sbjct: 559 ctgcgtatactttctgggcttcaaagaaggggaaagaatttggttatcttggaccaattc 618

                        
Query: 360 tgttttctgctct 372
           |||||||||||||
Sbjct: 619 tgttttctgctct 631
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>dbj|AK070043.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039E14, full
           insert sequence
          Length = 1106

 Score =  295 bits (149), Expect = 7e-77
 Identities = 319/373 (85%), Gaps = 2/373 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cggcatcctctgcgcgcagctgctcctcaccaccgtcgtctccgccgtaaccgtcttcca 60
           ||||||||||  ||||||||||||||||||||||| |||||||||  | |||||| ||||
Sbjct: 261 cggcatcctcgccgcgcagctgctcctcaccaccgccgtctccgcgctcaccgtcctcca 320

                                                                       
Query: 61  ccccaccctcaacgccacgctctccaactcgcccgtcctggcgctcgtgctcgctgtcct 120
           |||||||||||||||||||||||||  ||| ||   ||| || ||||||||||| |||||
Sbjct: 321 ccccaccctcaacgccacgctctcctcctccccgaccctcgccctcgtgctcgccgtcct 380

                                                                       
Query: 121 ccccttcatcctgatgatcccattgta-catctatcagcacaggcacccgcacaatcttg 179
           ||||||| |||||||| |||||||||| ||| ||||||||||  ||||| |||||  |||
Sbjct: 381 ccccttcgtcctgatggtcccattgtatcat-tatcagcacaaacacccacacaactttg 439

                                                                       
Query: 180 ctatcttgggtttgttcactctgtgcttgagcttcagcattggtgtggcttgtgcaaaca 239
            |  | ||||| |||||||  |||||||||| ||||| ||||||||||| ||||| ||||
Sbjct: 440 tttacctgggtctgttcacgttgtgcttgagtttcagtattggtgtggcatgtgctaaca 499

                                                                       
Query: 240 ctgaaggaaccattgtgcttcaggctttggtactgacctcagctgtggttgtctctctga 299
           || |||| |  ||||||||| |||| ||  || |||||||||||||||||| |||| |||
Sbjct: 500 ctcaagggaaaattgtgcttgaggcattaatattgacctcagctgtggttgcctctttga 559

                                                                       
Query: 300 ctgcgtacacattctgggcttcaaagaagggcaaggaatttagttaccttggaccatttc 359
           ||||||| || |||||||||||||||||||| || |||||| |||| ||||||||| |||
Sbjct: 560 ctgcgtatactttctgggcttcaaagaaggggaaagaatttggttatcttggaccaattc 619

                        
Query: 360 tgttttctgctct 372
           |||||||||||||
Sbjct: 620 tgttttctgctct 632
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>gb|AY104589.1| Zea mays PCO067801 mRNA sequence
          Length = 1197

 Score =  254 bits (128), Expect = 2e-64
 Identities = 289/340 (85%), Gaps = 2/340 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cggcatcctctgcgcgcagctgctcctcaccaccgtcgtctccgccgtaaccgtcttcca 60
           ||||||||||   |||||||||||||||||||||| |||||||||| | |||||  ||||
Sbjct: 314 cggcatcctcgctgcgcagctgctcctcaccaccgccgtctccgccctcaccgttctcca 373

                                                                       
Query: 61  ccccaccctcaacgccacgctctccaactcgcccgtcctggcgctcgtgctcgctgtcct 120
           ||||||||||||||||||||||||| |||| || | ||| |||||||||||||| |||||
Sbjct: 374 ccccaccctcaacgccacgctctccgactccccgggcctcgcgctcgtgctcgccgtcct 433

                                                                       
Query: 121 ccccttcatcctgatgatcccattgta-catctatcagcacaggcacccgcacaatcttg 179
            |||||||||||||||||||||||||| ||| |||||||||| |||||| |||||| | |
Sbjct: 434 gcccttcatcctgatgatcccattgtatcat-tatcagcacaagcacccacacaatttcg 492

                                                                       
Query: 180 ctatcttgggtttgttcactctgtgcttgagcttcagcattggtgtggcttgtgcaaaca 239
            | || ||||| |||||||  ||||||||||||||||||| |||||||||||||| ||||
Sbjct: 493 ttttcctgggtctgttcacgttgtgcttgagcttcagcatcggtgtggcttgtgctaaca 552

                                                                       
Query: 240 ctgaaggaaccattgtgcttcaggctttggtactgacctcagctgtggttgtctctctga 299
           |  |||| |  || || ||  ||||||| || |||||  | |  ||||| || |||||||
Sbjct: 553 cccaagggaaaatcgttctggaggctttagtgctgacggctggcgtggtggtttctctga 612

                                                   
Query: 300 ctgcgtacacattctgggcttcaaagaagggcaaggaatt 339
           |||||||  | |||||||| ||||||||||||||||||||
Sbjct: 613 ctgcgtatgctttctgggcgtcaaagaagggcaaggaatt 652
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>gb|BT016325.1| Zea mays clone Contig158 mRNA sequence
          Length = 1172

 Score =  252 bits (127), Expect = 9e-64
 Identities = 279/327 (85%), Gaps = 2/327 (0%)
 Strand = Plus / Plus

                                                                       
Query: 14  gcgcagctgctcctcaccaccgtcgtctccgccgtaaccgtcttccaccccaccctcaac 73
           |||||||||||||||||||||| |||||||||| | |||||  |||||||||||||||||
Sbjct: 281 gcgcagctgctcctcaccaccgccgtctccgccctcaccgttctccaccccaccctcaac 340

                                                                       
Query: 74  gccacgctctccaactcgcccgtcctggcgctcgtgctcgctgtcctccccttcatcctg 133
           |||||||||||| |||| || | ||| |||||||||||||| ||||| ||||||||||||
Sbjct: 341 gccacgctctccgactccccgggcctcgcgctcgtgctcgccgtcctgcccttcatcctg 400

                                                                       
Query: 134 atgatcccattgta-catctatcagcacaggcacccgcacaatcttgctatcttgggttt 192
           |||||||||||||| ||| |||||||||| |||||| |||||| | | | || ||||| |
Sbjct: 401 atgatcccattgtatcat-tatcagcacaagcacccacacaatttcgttttcctgggtct 459

                                                                       
Query: 193 gttcactctgtgcttgagcttcagcattggtgtggcttgtgcaaacactgaaggaaccat 252
           ||||||  ||||||||||||||||||| |||||||||||||| |||||  |||| |  ||
Sbjct: 460 gttcacgttgtgcttgagcttcagcatcggtgtggcttgtgctaacacccaagggaaaat 519

                                                                       
Query: 253 tgtgcttcaggctttggtactgacctcagctgtggttgtctctctgactgcgtacacatt 312
            || ||  ||||||| || |||||  | |  ||||| || ||||||||||||||  | ||
Sbjct: 520 cgttctggaggctttagtgctgacggctggcgtggtggtttctctgactgcgtatgcttt 579

                                      
Query: 313 ctgggcttcaaagaagggcaaggaatt 339
           |||||| ||||||||||||||||||||
Sbjct: 580 ctgggcgtcaaagaagggcaaggaatt 606
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>gb|AC135418.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0035J16,
              complete sequence
          Length = 170233

 Score =  131 bits (66), Expect = 2e-27
 Identities = 108/122 (88%)
 Strand = Plus / Minus

                                                                          
Query: 251    attgtgcttcaggctttggtactgacctcagctgtggttgtctctctgactgcgtacaca 310
              ||||||||| |||| ||  || |||||||||||||||||| |||| |||||||||| || 
Sbjct: 148231 attgtgcttgaggcattaatattgacctcagctgtggttgcctctttgactgcgtatact 148172

                                                                          
Query: 311    ttctgggcttcaaagaagggcaaggaatttagttaccttggaccatttctgttttctgct 370
              |||||||||||||||||||| || |||||| |||| ||||||||| ||||||||||||||
Sbjct: 148171 ttctgggcttcaaagaaggggaaagaatttggttatcttggaccaattctgttttctgct 148112

                
Query: 371    ct 372
              ||
Sbjct: 148111 ct 148110



 Score =  125 bits (63), Expect = 1e-25
 Identities = 111/127 (87%)
 Strand = Plus / Minus

                                                                          
Query: 1      cggcatcctctgcgcgcagctgctcctcaccaccgtcgtctccgccgtaaccgtcttcca 60
              ||||||||||  ||||||||||||||||||||||| |||||||||  | |||||| ||||
Sbjct: 149565 cggcatcctcgccgcgcagctgctcctcaccaccgccgtctccgcgctcaccgtcctcca 149506

                                                                          
Query: 61     ccccaccctcaacgccacgctctccaactcgcccgtcctggcgctcgtgctcgctgtcct 120
              |||||||||||||||||||||||||  ||| ||   ||| || ||||||||||| |||||
Sbjct: 149505 ccccaccctcaacgccacgctctcctcctccccgaccctcgccctcgtgctcgccgtcct 149446

                     
Query: 121    ccccttc 127
              |||||||
Sbjct: 149445 ccccttc 149439



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                          
Query: 186    tgggtttgttcactctgtgcttgagcttcagcattggtgtggcttgtgcaaacactgaag 245
              ||||| |||||||  |||||||||| ||||| ||||||||||| ||||| |||||| |||
Sbjct: 148382 tgggtctgttcacgttgtgcttgagtttcagtattggtgtggcatgtgctaacactcaag 148323

               
Query: 246    g 246
              |
Sbjct: 148322 g 148322
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>gb|AC120991.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0006J12, complete sequence
          Length = 157069

 Score =  131 bits (66), Expect = 2e-27
 Identities = 108/122 (88%)
 Strand = Plus / Minus

                                                                         
Query: 251   attgtgcttcaggctttggtactgacctcagctgtggttgtctctctgactgcgtacaca 310
             ||||||||| |||| ||  || |||||||||||||||||| |||| |||||||||| || 
Sbjct: 45594 attgtgcttgaggcattaatattgacctcagctgtggttgcctctttgactgcgtatact 45535

                                                                         
Query: 311   ttctgggcttcaaagaagggcaaggaatttagttaccttggaccatttctgttttctgct 370
             |||||||||||||||||||| || |||||| |||| ||||||||| ||||||||||||||
Sbjct: 45534 ttctgggcttcaaagaaggggaaagaatttggttatcttggaccaattctgttttctgct 45475

               
Query: 371   ct 372
             ||
Sbjct: 45474 ct 45473



 Score =  125 bits (63), Expect = 1e-25
 Identities = 111/127 (87%)
 Strand = Plus / Minus

                                                                         
Query: 1     cggcatcctctgcgcgcagctgctcctcaccaccgtcgtctccgccgtaaccgtcttcca 60
             ||||||||||  ||||||||||||||||||||||| |||||||||  | |||||| ||||
Sbjct: 46928 cggcatcctcgccgcgcagctgctcctcaccaccgccgtctccgcgctcaccgtcctcca 46869

                                                                         
Query: 61    ccccaccctcaacgccacgctctccaactcgcccgtcctggcgctcgtgctcgctgtcct 120
             |||||||||||||||||||||||||  ||| ||   ||| || ||||||||||| |||||
Sbjct: 46868 ccccaccctcaacgccacgctctcctcctccccgaccctcgccctcgtgctcgccgtcct 46809

                    
Query: 121   ccccttc 127
             |||||||
Sbjct: 46808 ccccttc 46802



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                         
Query: 186   tgggtttgttcactctgtgcttgagcttcagcattggtgtggcttgtgcaaacactgaag 245
             ||||| |||||||  |||||||||| ||||| ||||||||||| ||||| |||||| |||
Sbjct: 45745 tgggtctgttcacgttgtgcttgagtttcagtattggtgtggcatgtgctaacactcaag 45686

              
Query: 246   g 246
             |
Sbjct: 45685 g 45685
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  131 bits (66), Expect = 2e-27
 Identities = 108/122 (88%)
 Strand = Plus / Minus

                                                                            
Query: 251      attgtgcttcaggctttggtactgacctcagctgtggttgtctctctgactgcgtacaca 310
                ||||||||| |||| ||  || |||||||||||||||||| |||| |||||||||| || 
Sbjct: 19444882 attgtgcttgaggcattaatattgacctcagctgtggttgcctctttgactgcgtatact 19444823

                                                                            
Query: 311      ttctgggcttcaaagaagggcaaggaatttagttaccttggaccatttctgttttctgct 370
                |||||||||||||||||||| || |||||| |||| ||||||||| ||||||||||||||
Sbjct: 19444822 ttctgggcttcaaagaaggggaaagaatttggttatcttggaccaattctgttttctgct 19444763

                  
Query: 371      ct 372
                ||
Sbjct: 19444762 ct 19444761



 Score =  125 bits (63), Expect = 1e-25
 Identities = 111/127 (87%)
 Strand = Plus / Minus

                                                                            
Query: 1        cggcatcctctgcgcgcagctgctcctcaccaccgtcgtctccgccgtaaccgtcttcca 60
                ||||||||||  ||||||||||||||||||||||| |||||||||  | |||||| ||||
Sbjct: 19446216 cggcatcctcgccgcgcagctgctcctcaccaccgccgtctccgcgctcaccgtcctcca 19446157

                                                                            
Query: 61       ccccaccctcaacgccacgctctccaactcgcccgtcctggcgctcgtgctcgctgtcct 120
                |||||||||||||||||||||||||  ||| ||   ||| || ||||||||||| |||||
Sbjct: 19446156 ccccaccctcaacgccacgctctcctcctccccgaccctcgccctcgtgctcgccgtcct 19446097

                       
Query: 121      ccccttc 127
                |||||||
Sbjct: 19446096 ccccttc 19446090



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                            
Query: 186      tgggtttgttcactctgtgcttgagcttcagcattggtgtggcttgtgcaaacactgaag 245
                ||||| |||||||  |||||||||| ||||| ||||||||||| ||||| |||||| |||
Sbjct: 19445033 tgggtctgttcacgttgtgcttgagtttcagtattggtgtggcatgtgctaacactcaag 19444974

                 
Query: 246      g 246
                |
Sbjct: 19444973 g 19444973
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>gb|AC162030.8| Medicago truncatula clone mth2-178b21, complete sequence
          Length = 85986

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                      
Query: 311   ttctgggcttcaaagaagggcaaggaatttagttaccttgg 351
             ||||||||||| |||||||||||||| ||||| ||||||||
Sbjct: 72418 ttctgggcttccaagaagggcaaggattttagctaccttgg 72378
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>gb|BT014050.1| Lycopersicon esculentum clone 133147F, mRNA sequence
          Length = 1164

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 305 tacacattctgggcttcaaagaagggcaagga 336
           ||||||||||||||||| ||||||||||||||
Sbjct: 465 tacacattctgggcttctaagaagggcaagga 496
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>ref|XM_476832.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1205

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 296 ctgactgcgtacacattctgggcttcaaagaagggc 331
           |||||||| ||||||||||||||| |||||| ||||
Sbjct: 584 ctgactgcctacacattctgggctgcaaagaggggc 619
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                   
Query: 296     ctgactgcgtacacattctgggcttcaaagaagggc 331
               |||||||| ||||||||||||||| |||||| ||||
Sbjct: 4122098 ctgactgcctacacattctgggctgcaaagaggggc 4122063
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>dbj|AP003826.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OJ1361_E02
          Length = 100168

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 296  ctgactgcgtacacattctgggcttcaaagaagggc 331
            |||||||| ||||||||||||||| |||||| ||||
Sbjct: 5720 ctgactgcctacacattctgggctgcaaagaggggc 5685
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>dbj|AP004307.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0534H07
          Length = 144689

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                  
Query: 296    ctgactgcgtacacattctgggcttcaaagaagggc 331
              |||||||| ||||||||||||||| |||||| ||||
Sbjct: 114956 ctgactgcctacacattctgggctgcaaagaggggc 114921
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>dbj|AK073781.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068H10, full
           insert sequence
          Length = 1203

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 296 ctgactgcgtacacattctgggcttcaaagaagggc 331
           |||||||| ||||||||||||||| |||||| ||||
Sbjct: 582 ctgactgcctacacattctgggctgcaaagaggggc 617
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 26      ctcaccaccgtcgtctccgccg 47
               ||||||||||||||||||||||
Sbjct: 1878944 ctcaccaccgtcgtctccgccg 1878965
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>ref|NM_001016838.2| Xenopus tropicalis hypothetical protein LOC549592 (LOC549592), mRNA
          Length = 1410

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 211 cttcagcattggtgtggcttgtgca 235
           |||||||||||||||||||| ||||
Sbjct: 686 cttcagcattggtgtggcttctgca 662
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>gb|AY105221.1| Zea mays PCO086679 mRNA sequence
          Length = 1138

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 17  cagctgctcctcaccaccgtcgtctccgc 45
           ||||||||||||||| |||||||| ||||
Sbjct: 339 cagctgctcctcaccgccgtcgtcgccgc 367
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>emb|CR855480.2| Xenopus tropicalis finished cDNA, clone TNeu095j18
          Length = 1410

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 211 cttcagcattggtgtggcttgtgca 235
           |||||||||||||||||||| ||||
Sbjct: 686 cttcagcattggtgtggcttctgca 662
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>gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence
          Length = 211664

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 51   ccgtcttccaccccaccctcaacgccac 78
            ||||||||||||||||| ||| ||||||
Sbjct: 2307 ccgtcttccaccccaccatcaccgccac 2334
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>gb|AC116130.15| Mus musculus chromosome 17, clone RP23-98F21, complete sequence
          Length = 228842

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 206    ttgagcttcagcattggtgt 225
              ||||||||||||||||||||
Sbjct: 205857 ttgagcttcagcattggtgt 205876
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>gb|AC167969.2| Mus musculus BAC clone RP24-446H24 from chromosome 17, complete sequence
          Length = 178774

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 201    tgtgcttgagcttcagcatt 220
              ||||||||||||||||||||
Sbjct: 139970 tgtgcttgagcttcagcatt 139951
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>ref|XM_359291.3| PREDICTED: Mus musculus ring finger protein 39, transcript variant 1
            (Rnf39), mRNA
          Length = 3401

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 206  ttgagcttcagcattggtgt 225
            ||||||||||||||||||||
Sbjct: 2499 ttgagcttcagcattggtgt 2480
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>gb|AC129311.6| Mus musculus BAC clone RP24-404P10 from chromosome 3, complete sequence
          Length = 160537

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 307   cacattctgggcttcaaaga 326
             ||||||||||||||||||||
Sbjct: 38307 cacattctgggcttcaaaga 38288
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>ref|XM_849968.1| PREDICTED: Canis familiaris similar to Cylicin-2 (Cylicin II)
           (Multiple-band polypeptide II) (LOC612232), mRNA
          Length = 1059

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 317 gcttcaaagaagggcaagga 336
           ||||||||||||||||||||
Sbjct: 694 gcttcaaagaagggcaagga 713
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>gb|AC122384.3| Mus musculus BAC clone RP24-63P8 from chromosome 17, complete sequence
          Length = 190880

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 201   tgtgcttgagcttcagcatt 220
             ||||||||||||||||||||
Sbjct: 33762 tgtgcttgagcttcagcatt 33743
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>emb|AL161628.9| Human DNA sequence from clone RP11-31K16 on chromosome 9 Contains a
             pseudogene similar to part of nucleolar protein 5A (56kDa
             with KKE/D repeat) (NOL5A) (NOP56), the ELAVL2 gene for
             ELAV (embryonic lethal, abnormal vision, Drosophila)-like
             2 (Hu antigen B) (HUB, HELN1), two novel genes, the 5' end
             of a novel gene and a CpG island, complete sequence
          Length = 183483

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 131   ctgatgatcccattgtacat 150
             ||||||||||||||||||||
Sbjct: 33491 ctgatgatcccattgtacat 33510
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>emb|AL034348.5|HS84D21 Human DNA sequence from clone RP1-84D21 on chromosome 6q15-16.3,
             complete sequence
          Length = 120514

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 203   tgcttgagcttcagcattgg 222
             ||||||||||||||||||||
Sbjct: 28989 tgcttgagcttcagcattgg 28970
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>emb|AL445623.2|HS315I14 Homo sapiens chromosome 9 BAC RP11-315I14, complete sequence
          Length = 198637

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 131    ctgatgatcccattgtacat 150
              ||||||||||||||||||||
Sbjct: 159083 ctgatgatcccattgtacat 159102
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>emb|CR860476.1| Pongo pygmaeus mRNA; cDNA DKFZp459C011 (from clone DKFZp459C011)
          Length = 3988

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 212 ttcagcattggtgtggcttgtgca 235
           ||||||||||||||||||| ||||
Sbjct: 799 ttcagcattggtgtggcttctgca 776
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>emb|CR858051.1| Pongo pygmaeus mRNA; cDNA DKFZp459H1130 (from clone DKFZp459H1130)
          Length = 3990

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 212 ttcagcattggtgtggcttgtgca 235
           ||||||||||||||||||| ||||
Sbjct: 806 ttcagcattggtgtggcttctgca 783
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>dbj|AP007162.1| Aspergillus oryzae RIB40 genomic DNA, SC102
          Length = 1779707

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 316     ggcttcaaagaagggcaagg 335
               ||||||||||||||||||||
Sbjct: 1654051 ggcttcaaagaagggcaagg 1654032
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>dbj|AK162607.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:9630054D02 product:protein
            phosphatase 1, regulatory (inhibitor) subunit 11, full
            insert sequence
          Length = 1564

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 206  ttgagcttcagcattggtgt 225
            ||||||||||||||||||||
Sbjct: 1273 ttgagcttcagcattggtgt 1292
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>gb|AF532114.1| Mus musculus strain 129/SvJ BAC clone citb544e14 from the MHC region,
             complete sequence
          Length = 153869

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   ttgagcttcagcattggtgt 225
             ||||||||||||||||||||
Sbjct: 22040 ttgagcttcagcattggtgt 22021
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>gb|AF532112.1| Mus musculus strain 129/SvJ BAC clone citb20h22 from the MHC region,
              complete sequence
          Length = 172199

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 206    ttgagcttcagcattggtgt 225
              ||||||||||||||||||||
Sbjct: 116456 ttgagcttcagcattggtgt 116437
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>gb|AC005960.1|AC005960 Mus musculus chromosome 17 BAC citb20h22 from the MHC region, complete
              sequence
          Length = 158414

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 206    ttgagcttcagcattggtgt 225
              ||||||||||||||||||||
Sbjct: 116438 ttgagcttcagcattggtgt 116419
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>emb|CR956641.9| Mouse DNA sequence from clone RP23-77N9 on chromosome 17, complete
             sequence
          Length = 202624

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 206   ttgagcttcagcattggtgt 225
             ||||||||||||||||||||
Sbjct: 69352 ttgagcttcagcattggtgt 69371


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,981,996
Number of Sequences: 3902068
Number of extensions: 3981996
Number of successful extensions: 80352
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80186
Number of HSP's gapped (non-prelim): 155
length of query: 470
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 448
effective length of database: 17,147,199,772
effective search space: 7681945497856
effective search space used: 7681945497856
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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