ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast77b04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SCOT_MOUSE (Q9D0K2) Succinyl-CoA:3-ketoacid-coenzyme A transfera... 30 2.3
2PKN2_MYXXA (P54736) Serine/threonine-protein kinase pkn2 (EC 2.7... 29 6.7

>SCOT_MOUSE (Q9D0K2) Succinyl-CoA:3-ketoacid-coenzyme A transferase 1,|
           mitochondrial precursor (EC 2.8.3.5) (Somatic-type
           succinyl CoA:3-oxoacid CoA-transferase) (Scot-S)
          Length = 520

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 22/66 (33%), Positives = 29/66 (43%)
 Frame = +2

Query: 257 ERRLMSGSKMKEMTGSGIFAEKXXXXXXXXXXPANRTSVRMYQQTVTGVSQISFSADGSV 436
           ER+ +SG    E+T  G  AE+          PA  TS         G S I ++ DGSV
Sbjct: 123 ERQFLSGELEVELTPQGTLAER--IRAGGAGVPAFYTSTGYGTLVQEGGSPIKYNKDGSV 180

Query: 437 SPRSHP 454
           +  S P
Sbjct: 181 AIASKP 186



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>PKN2_MYXXA (P54736) Serine/threonine-protein kinase pkn2 (EC 2.7.11.1)|
          Length = 830

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 5   PEREAVTIEHGGQHSSGAMERATPVRSPHTSTA 103
           P+  + T   G   SSG+   A P  SPHT TA
Sbjct: 337 PQASSGTAAFGVASSSGSASGALPAASPHTGTA 369


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,552,435
Number of Sequences: 219361
Number of extensions: 658242
Number of successful extensions: 1540
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1540
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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