>LPXK_XYLFA (Q9PEE6) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A|
           4'-kinase)
          Length = 339

 Score = 32.0 bits (71), Expect = 0.61
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +1

Query: 292 TDKPSVVCVSMADGGPEAAP-PLEFPSAGWRXLYDRLQGLL 411
           TDK +V C + AD    + P  +E P+A W  L+DRL+ L+
Sbjct: 297 TDKDAVKCRAFADDWFFSVPLRVELPTAFWTALFDRLERLV 337

>PRGR_HUMAN (P06401) Progesterone receptor (PR)|
          Length = 933

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
 Frame = +1

Query: 151 PTRSPDPLLARATPSDPPSRELPVDPSLVHLHLIRSAPLSAHGSEGGTDKPSVVCV-SMA 327
           P   P PL  RATPS P    +   P+        SA +S+  S G T    + C+   A
Sbjct: 418 PLGPPPPLPPRATPSRPGEAAVTAAPA--------SASVSSASSSGST----LECILYKA 465

Query: 328 DG-----GPEAAPPLEFPSA 372
           +G     GP A PP + P A
Sbjct: 466 EGAPPQQGPFAPPPCKAPGA 485

>FLNB_MOUSE (Q80X90) Filamin-B (FLN-B) (Beta-filamin) (Actin-binding-like|
            protein) (ABP-280-like protein)
          Length = 2602

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 211  ELPVDPSLVHLHLIRSAPLSAHGSEGGTDKPSVVCVSMADGGP 339
            E+P DPS V    + S P   HG  G   +P ++CV  ++ GP
Sbjct: 1128 EMPFDPSKV----VASGPGLEHGKVG---EPGILCVDCSEAGP 1163

>WNK2_HUMAN (Q9Y3S1) Serine/threonine-protein kinase WNK2 (EC 2.7.11.1) (Protein|
            kinase with no lysine 2) (Protein kinase,
            lysine-deficient 2)
          Length = 2297

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
 Frame = +1

Query: 151  PTRSPDPLLARAT-----PSDPPSRELPVDPSLVHLHL-IRSAPLSAHGSEGGTDKPSVV 312
            PTR P P+L         P  PP   LPV P  +  HL  ++AP +  GS+     P+  
Sbjct: 972  PTRPPQPVLPPQPMLPPQPVLPPQPALPVRPEPLQPHLPEQAAPAATPGSQILLGHPAPY 1031

Query: 313  CVSMADGGPEAAPP 354
             V +A   P    P
Sbjct: 1032 AVDVAAQVPTVPVP 1045

>SIM2_HUMAN (Q14190) Single-minded homolog 2|
          Length = 667

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +1

Query: 175 LARATPS--DPPSRELPVDPSLVHLHLIRSAPLSAHGSEGGTDKPSVVCVSMADGGPEAA 348
           LARA P    PP+ E P  P+ +   L+    + A     G   P+   ++ A GGPEAA
Sbjct: 573 LARAAPECCAPPTPEAPGAPAQLPFVLLNYHRVLARRGPLGGAAPAASGLACAPGGPEAA 632

>POLG_HCVBB (Q68749) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3036

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 10/70 (14%)
 Frame = +1

Query: 148  SPTRSPDPLLARATPSDPPSRELPVDPSLVHLHLIRSAPLSAHGSEGGTDK--------- 300
            SP   PD   A +  S PP    P DP L    +   AP    G+  G+D          
Sbjct: 2379 SPPDEPDDSEAGSVSSMPPLEGEPGDPDLEPEQVEHPAPPQEGGAAPGSDSGSWSTCSDV 2438

Query: 301  -PSVVCVSMA 327
              SVVC SM+
Sbjct: 2439 DDSVVCCSMS 2448

>BSN_HUMAN (Q9UPA5) Bassoon protein (Zinc-finger protein 231)|
          Length = 3925

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +1

Query: 253  RSAPLSAHGSEGGTDKPSVVCVSMADGGPEAAP--PLEFPS 369
            R  PLSA   EGGT +PS      A   P  +P  P E P+
Sbjct: 1449 REKPLSASDGEGGTPQPSRAYSYFASSSPPLSPSSPSESPT 1489

>SPEG_HUMAN (Q15772) Striated muscle preferentially expressed protein kinase (EC|
            2.7.11.1) (Aortic preferentially expressed protein 1)
            (APEG-1)
          Length = 3223

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 12/88 (13%)
 Frame = +1

Query: 148  SPTRSPDPLLARATPSDPP----SRELPVDPSLVHLHLIRSAPLSAHG---SEG-----G 291
            +P   P+P+ A + P+ PP    +  LP+ P   +  +I+S  LS H    S+G      
Sbjct: 2215 APEPRPEPVRA-SKPAPPPQALQTLALPLTP---YAQIIQSLQLSGHAQGPSQGPAAPPS 2270

Query: 292  TDKPSVVCVSMADGGPEAAPPLEFPSAG 375
              KP     +     P  AP    PSAG
Sbjct: 2271 EPKPHAAVFARVASPPPGAPEKRVPSAG 2298

>PYRG_THEAC (Q9HM27) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP|
           synthetase)
          Length = 545

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 184 ATPSDPPSRELPVDPSLVHLHLIRSAPLSAHGSEG 288
           AT      +  P+DPS VHLHL+  A +  H   G
Sbjct: 496 ATQYHSEFKSRPLDPSKVHLHLVEQALIFKHRRMG 530

>TRPC_RHOCA (Q02584) Indole-3-glycerol phosphate synthase (EC 4.1.1.48) (IGPS)|
          Length = 261

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = +1

Query: 160 SPDPLLARATPSD-PPSRELPVDPSLVHLHLIRSAPLSAHGSEGGTDKPSVVCVSMADGG 336
           +PD L+AR TP+  PPS++   DP  V           A     G D   ++  S+ D  
Sbjct: 101 APDYLIARGTPAPCPPSKDFLYDPYQV-----------AEARAWGADCILIIMASVEDA- 148

Query: 337 PEAAPPLEFPSAGW 378
              A  LE  + GW
Sbjct: 149 --LAVELEAAATGW 160

>CSKI2_MOUSE (Q8VHK1) Caskin-2|
          Length = 1201

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 22/69 (31%), Positives = 27/69 (39%)
 Frame = +1

Query: 151  PTRSPDPLLARATPSDPPSRELPVDPSLVHLHLIRSAPLSAHGSEGGTDKPSVVCVSMAD 330
            P  S  P LA +T S P     P  P         +A L   G+       SV C  +A 
Sbjct: 1062 PGPSAGPALANSTGSKPNVETEPPAPP--------AALLKVPGAGTAPKPVSVACTQLAF 1113

Query: 331  GGPEAAPPL 357
             GP+ AP L
Sbjct: 1114 SGPKLAPRL 1122

>LPXK_XYLFT (Q87EE9) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A|
           4'-kinase)
          Length = 339

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 292 TDKPSVVCVSMADGGPEAAP-PLEFPSAGWRXLYDRLQGLL 411
           T+K +V C + AD    + P  +E P+  W  L+DRL+ L+
Sbjct: 297 TEKDAVKCRAFADDWFFSVPLRVELPTVFWTALFDRLERLV 337

>INO80_NEUCR (Q872I5) Putative DNA helicase ino-80 (EC 3.6.1.-)|
          Length = 2001

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
 Frame = +1

Query: 163 PDPLLARATPS-DPPSRELPVDPSLVHLHLIRSAPLSAHG----SEGGTDKPSVVCVSMA 327
           P+P +A + PS  PP   L   P++  +  + SAP  A G    S GG    + + VS +
Sbjct: 186 PNPFVAASAPSLPPPPSSLQAPPAITPIAGL-SAPAPASGSLPLSAGGIG--NSITVSSS 242

Query: 328 DGGPEAAPPLEFPSA 372
              P  A  L  PSA
Sbjct: 243 SQPPARASQLHAPSA 257

>OPGD1_RALSO (Q8XUX6) Glucans biosynthesis protein D 1 precursor|
          Length = 535

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
 Frame = +1

Query: 178 ARATPSDPPSRELPVDPSLVHLHLIRSAPLSAHGSEGGTDKPSVVCVSMADGG----PEA 345
           ARA  +    + LP D    HL L   +P+  H   GG  +      +M D G      A
Sbjct: 80  ARADHALWAGQSLPFDARFFHLGLFFKSPVRMHEVAGGQSRVIAYDPAMFDYGKSGLDHA 139

Query: 346 APPLEFPSAGWR 381
           A P +   AG+R
Sbjct: 140 ALPADLGFAGFR 151

>PLXB1_MOUSE (Q8CJH3) Plexin-B1 precursor|
          Length = 2119

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
 Frame = +1

Query: 148 SPTRSPDPLLARATPSDPPS-------RELPVDPSLVHLHLIRSAPLSAHGSEGGTDKPS 306
           SPT +  PL  +  P DPP+           + PS     L+ S P  +           
Sbjct: 745 SPTSTESPLHEKPLPPDPPTIPGTTVPAPTGLGPSTTPEDLLASYPFPS----------D 794

Query: 307 VVCVSMADGGPEAAPPL 357
              VS A+ GPEA P +
Sbjct: 795 AAAVSPAEPGPEALPSM 811

>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2|
           (ALL1-related protein)
          Length = 5262

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 25/75 (33%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
 Frame = +1

Query: 151 PTRSPDPLLARATPSDPPSRELPVDPSLVHLHLIR---SAPLSAHGSEGGTDKPSVVCVS 321
           P  SP      A+   PP  ELP  P    LHL R    +PLS    E     P      
Sbjct: 453 PEESPTSPPPEASRLSPPPEELPASPLPEALHLSRPLEESPLSPPPEESPLSPP------ 506

Query: 322 MADGGPEAAP--PLE 360
                PE++P  PLE
Sbjct: 507 -----PESSPFSPLE 516

>GAG_FSVMD (P03340) Gag polyprotein [Contains: Core protein p15; Core protein|
           p12; Core protein p30; Core protein p10]
          Length = 536

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = +1

Query: 151 PTRSPDPLLARATPSDPPSRELPVDPSLVHLHLIRSAPLSAHGSEG 288
           PT S  P+L +  P  PP   LP DPS   + L+   P    G  G
Sbjct: 199 PTSSLYPVLPKTNPPKPP--VLPPDPSSPLIDLLTEEPPPYPGGHG 242

>HIC1_HUMAN (Q14526) Hypermethylated in cancer 1 protein (Hic-1) (Zinc finger|
           and BTB domain-containing protein 29)
          Length = 733

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
 Frame = +1

Query: 196 DPPSRELPVDPSLVHLHLIRSAPLSAHGSEGGTDK--PSVVC------VSMADGGPE--A 345
           +PP R  P  PSL++  +     L ++G E G ++  PS  C       +++ GGP    
Sbjct: 317 EPPGR--PDGPSLLYRWMKHEPGLGSYGDELGRERGSPSERCEERGGDAAVSPGGPPLGL 374

Query: 346 APPLEFPSA 372
           APP  +P +
Sbjct: 375 APPPRYPGS 383

>ZN206_HUMAN (Q96SZ4) Zinc finger protein 206 (Zinc finger and SCAN|
           domain-containing protein 10)
          Length = 725

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
 Frame = +1

Query: 163 PDPLLARATPSDPPSRELPVDPSLVHLHLIRSAPLSAHGSEGGT-DKPSVVCVSMADGGP 339
           P P+LA +    P    +P +P    L   R A  S  G +G       ++ V +A+G P
Sbjct: 230 PTPILAESQADSPG---VPGEPCAQSLG--RGAAASGPGEDGSLLGSSEILEVKVAEGVP 284

Query: 340 EAAPPLEFPSAGWRXLYDRLQGL 408
           E  P L+F  A     + +L  L
Sbjct: 285 EPNPELQFICADCGVSFPQLSRL 307

>KLF12_MOUSE (O35738) Krueppel-like factor 12 (Transcriptional repressor|
           AP-2rep)
          Length = 402

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 11/79 (13%)
 Frame = +1

Query: 151 PTRSPDPLLARATPSDPPSRELPVD-------PSLVHLHLIRSAPLSAHGS----EGGTD 297
           P     PLL      +PP   LPVD       P  + ++  R++P +A  S     G   
Sbjct: 49  PDMEAVPLLLNNVKGEPPEDSLPVDHFQTQTEPVDLSINKARTSPTAASSSPVSMTGSAS 108

Query: 298 KPSVVCVSMADGGPEAAPP 354
            PS    S +     A+ P
Sbjct: 109 SPSSTSTSSSSSSRPASSP 127

>TAF5_HUMAN (Q15542) Transcription initiation factor TFIID subunit 5|
           (Transcription initiation factor TFIID 100 kDa subunit)
           (TAF(II)100) (TAFII-100) (TAFII100)
          Length = 800

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 259 APLSAHGSEGGTDKPSVVCVSMADGGPEAAP-PLEFPSAG 375
           A  S+ G +GGT KP+V   + A  G  AAP P   P AG
Sbjct: 52  AASSSTGGDGGTPKPTVAVSAAAPAG--AAPVPAAAPDAG 89

>CAPU_DROME (Q24120) Protein cappuccino|
          Length = 1059

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 19/69 (27%), Positives = 22/69 (31%)
 Frame = +1

Query: 151 PTRSPDPLLARATPSDPPSRELPVDPSLVHLHLIRSAPLSAHGSEGGTDKPSVVCVSMAD 330
           P   P PL A   P  PP    P  P L +       P    GS      P    +    
Sbjct: 487 PPPPPPPLHAFVAPPPPPPPPPPPPPPLANYGAPPPPPPPPPGSGSAPPPPPPAPIEGGG 546

Query: 331 GGPEAAPPL 357
           G P   PP+
Sbjct: 547 GIPPPPPPM 555

>HCFC1_HUMAN (P51610) Host cell factor (HCF) (HCF-1) (C1 factor) (VP16 accessory|
            protein) (VCAF) (CFF) [Contains: HCF N-terminal chain 1;
            HCF N-terminal chain 2; HCF N-terminal chain 3; HCF
            N-terminal chain 4; HCF N-terminal chain 5; HCF
            N-terminal chain
          Length = 2035

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = +1

Query: 169  PLLARATPSDPPSRELPVDPSLVHLHLIRSAPLSAHGSEGGTDKPSVVCVSMADGGP 339
            PL ++   S P  ++LP      H H + +A ++      G  + + VC S+  G P
Sbjct: 1213 PLSSKVRLSSPSIKDLPAGR---HSHAVSTAAMTRSSVGAGEPRMAPVCESLQGGSP 1266


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,701,895
Number of Sequences: 219361
Number of extensions: 728423
Number of successful extensions: 3247
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 3020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3244
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)