ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast77a04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467289.1| Oryza sativa (japonica cultivar-group), mRNA 192 7e-46
2emb|AJ495787.1|OSA495787 Oryza sativa (japonica cultivar-group) ... 192 7e-46
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 192 7e-46
4dbj|AP005868.3| Oryza sativa (japonica cultivar-group) genomic D... 192 7e-46
5dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic D... 192 7e-46
6dbj|AK066018.1| Oryza sativa (japonica cultivar-group) cDNA clon... 192 7e-46
7gb|AY104127.1| Zea mays PCO110287 mRNA sequence 103 5e-19
8ref|NM_190404.1| Oryza sativa (japonica cultivar-group), predic... 78 3e-11
9dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
10dbj|AP003315.1| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
11dbj|AK070492.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 3e-11
12ref|XM_507210.1| PREDICTED Oryza sativa (japonica cultivar-group... 46 0.10
13ref|XM_482094.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.10
14ref|XM_507209.1| PREDICTED Oryza sativa (japonica cultivar-group... 46 0.10
15dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.10
16dbj|AP003962.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.10
17dbj|AK120163.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.10
18dbj|AK099366.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.10
19dbj|AK061225.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.10
20emb|CT027663.2| Medicago truncatula chromosome 5 clone mth2-139g... 46 0.10
21gb|BT013889.1| Lycopersicon esculentum clone 132874R, mRNA sequence 44 0.41
22gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 44 0.41
23gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 42 1.6
24gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 42 1.6
25gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 42 1.6
26dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
27dbj|AP003763.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
28dbj|AP003619.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
29dbj|AK101738.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
30dbj|AK058294.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
31gb|AC134236.4| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
32gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome 40 6.4
33gb|AC167138.6| Mus musculus chromosome 15, clone RP24-358O3, com... 40 6.4
34gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 6.4
35gb|AC166984.7| Mus musculus chromosome 15, clone RP24-359A11, co... 40 6.4
36ref|XM_427363.1| PREDICTED: Gallus gallus similar to RIKEN cDNA ... 40 6.4
37gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.4
38ref|XM_542614.2| PREDICTED: Canis familiaris similar to Potassiu... 40 6.4
39gb|AC024475.15| Homo sapiens chromosome 11, clone RP11-702F3, co... 40 6.4
40emb|AJ243808.1|BJA243808 Bradyrhizobium japonicum yaeN and ftsH ... 40 6.4
41gb|AC147179.15| Medicago truncatula clone mth2-142n19, complete ... 40 6.4
42emb|AJ719662.1| Gallus gallus mRNA for hypothetical protein, clo... 40 6.4
43ref|NM_001030385.1| Gallus gallus LSM16 homolog (EDC3, S. cerevi... 40 6.4
44dbj|AK171719.1| Mus musculus activated spleen cDNA, RIKEN full-l... 40 6.4
45dbj|AK138747.1| Mus musculus 0 day neonate thymus cDNA, RIKEN fu... 40 6.4
46gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 6.4
47dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
48dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 6.4
49gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 6.4
50dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 6.4
51dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 6.4
52dbj|AK104839.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.4
53dbj|AK068678.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.4
54dbj|AK066955.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.4
55emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 40 6.4
56emb|Z94763.1|HSZ94763 H.sapiens genomic DNA fragment (clone J32A... 40 6.4 
>ref|XM_467289.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1624

 Score =  192 bits (97), Expect = 7e-46
 Identities = 259/313 (82%)
 Strand = Plus / Plus

                                                                       
Query: 158 gaaaatgagcgacaatctgatggagaaagtgaacgccctcggcgagcgcctcaagatcac 217
           ||||||||| |||||||||||||| || || | |||| | |||||||| || ||||||||
Sbjct: 253 gaaaatgagtgacaatctgatggacaaggttagcgcctttggcgagcgtctgaagatcac 312

                                                                       
Query: 218 cgggtcggaggtgagcaagcagatgcaggccggcatgagctccatgagcttcaagatgaa 277
            ||||| ||||| |||||| |||||  ||| ||||||  |||||||||||||||||||||
Sbjct: 313 tgggtcagaggttagcaagaagatgacggctggcatgtcctccatgagcttcaagatgaa 372

                                                                       
Query: 278 ggagctcttccaggcgcagaccccggccgacaagatcgtcgaggacgccaccgccgagag 337
           |||| ||||||||| |||||| || || |||||||| || ||||| |||||| | |||| 
Sbjct: 373 ggagatcttccaggggcagactcccgcggacaagattgtggaggaggccacctcagagaa 432

                                                                       
Query: 338 cctcgaggggcccgactgggccgccaacctcgaaatctgcgacctcatcaacaccgagca 397
             | || ||||| || ||| | || ||||| |||||||| ||| | |||||||| ||| |
Sbjct: 433 tttggacgggcctgattggtcggcaaacctggaaatctgtgacttgatcaacacggagaa 492

                                                                       
Query: 398 ggtgaacagcgtcgacctgatccgcgggatcaagaagcggatcgtgctcaaggaggccag 457
            || ||||| ||||| |||||||| |||||||||||||||||| |||| ||||| || ||
Sbjct: 493 agttaacagtgtcgagctgatccgtgggatcaagaagcggatcatgctgaaggatgctag 552

                        
Query: 458 ggtccagttcctc 470
           |||||||| ||||
Sbjct: 553 ggtccagtacctc 565
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>emb|AJ495787.1|OSA495787 Oryza sativa (japonica cultivar-group) mRNA for TOM1 protein
          Length = 1740

 Score =  192 bits (97), Expect = 7e-46
 Identities = 259/313 (82%)
 Strand = Plus / Plus

                                                                       
Query: 158 gaaaatgagcgacaatctgatggagaaagtgaacgccctcggcgagcgcctcaagatcac 217
           ||||||||| |||||||||||||| || || | |||| | |||||||| || ||||||||
Sbjct: 252 gaaaatgagtgacaatctgatggacaaggttagcgcctttggcgagcgtctgaagatcac 311

                                                                       
Query: 218 cgggtcggaggtgagcaagcagatgcaggccggcatgagctccatgagcttcaagatgaa 277
            ||||| ||||| |||||| |||||  ||| ||||||  |||||||||||||||||||||
Sbjct: 312 tgggtcagaggttagcaagaagatgacggctggcatgtcctccatgagcttcaagatgaa 371

                                                                       
Query: 278 ggagctcttccaggcgcagaccccggccgacaagatcgtcgaggacgccaccgccgagag 337
           |||| ||||||||| |||||| || || |||||||| || ||||| |||||| | |||| 
Sbjct: 372 ggagatcttccaggggcagactcccgcggacaagattgtggaggaggccacctcagagaa 431

                                                                       
Query: 338 cctcgaggggcccgactgggccgccaacctcgaaatctgcgacctcatcaacaccgagca 397
             | || ||||| || ||| | || ||||| |||||||| ||| | |||||||| ||| |
Sbjct: 432 tttggacgggcctgattggtcggcaaacctggaaatctgtgacttgatcaacacggagaa 491

                                                                       
Query: 398 ggtgaacagcgtcgacctgatccgcgggatcaagaagcggatcgtgctcaaggaggccag 457
            || ||||| ||||| |||||||| |||||||||||||||||| |||| ||||| || ||
Sbjct: 492 agttaacagtgtcgagctgatccgtgggatcaagaagcggatcatgctgaaggatgctag 551

                        
Query: 458 ggtccagttcctc 470
           |||||||| ||||
Sbjct: 552 ggtccagtacctc 564
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  192 bits (97), Expect = 7e-46
 Identities = 259/313 (82%)
 Strand = Plus / Plus

                                                                            
Query: 158      gaaaatgagcgacaatctgatggagaaagtgaacgccctcggcgagcgcctcaagatcac 217
                ||||||||| |||||||||||||| || || | |||| | |||||||| || ||||||||
Sbjct: 28692250 gaaaatgagtgacaatctgatggacaaggttagcgcctttggcgagcgtctgaagatcac 28692309

                                                                            
Query: 218      cgggtcggaggtgagcaagcagatgcaggccggcatgagctccatgagcttcaagatgaa 277
                 ||||| ||||| |||||| |||||  ||| ||||||  |||||||||||||||||||||
Sbjct: 28692310 tgggtcagaggttagcaagaagatgacggctggcatgtcctccatgagcttcaagatgaa 28692369

                                                                            
Query: 278      ggagctcttccaggcgcagaccccggccgacaagatcgtcgaggacgccaccgccgagag 337
                |||| ||||||||| |||||| || || |||||||| || ||||| |||||| | |||| 
Sbjct: 28692370 ggagatcttccaggggcagactcccgcggacaagattgtggaggaggccacctcagagaa 28692429

                                                                            
Query: 338      cctcgaggggcccgactgggccgccaacctcgaaatctgcgacctcatcaacaccgagca 397
                  | || ||||| || ||| | || ||||| |||||||| ||| | |||||||| ||| |
Sbjct: 28692430 tttggacgggcctgattggtcggcaaacctggaaatctgtgacttgatcaacacggagaa 28692489

                                                                            
Query: 398      ggtgaacagcgtcgacctgatccgcgggatcaagaagcggatcgtgctcaaggaggccag 457
                 || ||||| ||||| |||||||| |||||||||||||||||| |||| ||||| || ||
Sbjct: 28692490 agttaacagtgtcgagctgatccgtgggatcaagaagcggatcatgctgaaggatgctag 28692549

                             
Query: 458      ggtccagttcctc 470
                |||||||| ||||
Sbjct: 28692550 ggtccagtacctc 28692562
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>dbj|AP005868.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0666E12
          Length = 47765

 Score =  192 bits (97), Expect = 7e-46
 Identities = 259/313 (82%)
 Strand = Plus / Plus

                                                                         
Query: 158   gaaaatgagcgacaatctgatggagaaagtgaacgccctcggcgagcgcctcaagatcac 217
             ||||||||| |||||||||||||| || || | |||| | |||||||| || ||||||||
Sbjct: 40263 gaaaatgagtgacaatctgatggacaaggttagcgcctttggcgagcgtctgaagatcac 40322

                                                                         
Query: 218   cgggtcggaggtgagcaagcagatgcaggccggcatgagctccatgagcttcaagatgaa 277
              ||||| ||||| |||||| |||||  ||| ||||||  |||||||||||||||||||||
Sbjct: 40323 tgggtcagaggttagcaagaagatgacggctggcatgtcctccatgagcttcaagatgaa 40382

                                                                         
Query: 278   ggagctcttccaggcgcagaccccggccgacaagatcgtcgaggacgccaccgccgagag 337
             |||| ||||||||| |||||| || || |||||||| || ||||| |||||| | |||| 
Sbjct: 40383 ggagatcttccaggggcagactcccgcggacaagattgtggaggaggccacctcagagaa 40442

                                                                         
Query: 338   cctcgaggggcccgactgggccgccaacctcgaaatctgcgacctcatcaacaccgagca 397
               | || ||||| || ||| | || ||||| |||||||| ||| | |||||||| ||| |
Sbjct: 40443 tttggacgggcctgattggtcggcaaacctggaaatctgtgacttgatcaacacggagaa 40502

                                                                         
Query: 398   ggtgaacagcgtcgacctgatccgcgggatcaagaagcggatcgtgctcaaggaggccag 457
              || ||||| ||||| |||||||| |||||||||||||||||| |||| ||||| || ||
Sbjct: 40503 agttaacagtgtcgagctgatccgtgggatcaagaagcggatcatgctgaaggatgctag 40562

                          
Query: 458   ggtccagttcctc 470
             |||||||| ||||
Sbjct: 40563 ggtccagtacctc 40575
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>dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
            clone:P0459B01
          Length = 163087

 Score =  192 bits (97), Expect = 7e-46
 Identities = 259/313 (82%)
 Strand = Plus / Plus

                                                                        
Query: 158  gaaaatgagcgacaatctgatggagaaagtgaacgccctcggcgagcgcctcaagatcac 217
            ||||||||| |||||||||||||| || || | |||| | |||||||| || ||||||||
Sbjct: 8823 gaaaatgagtgacaatctgatggacaaggttagcgcctttggcgagcgtctgaagatcac 8882

                                                                        
Query: 218  cgggtcggaggtgagcaagcagatgcaggccggcatgagctccatgagcttcaagatgaa 277
             ||||| ||||| |||||| |||||  ||| ||||||  |||||||||||||||||||||
Sbjct: 8883 tgggtcagaggttagcaagaagatgacggctggcatgtcctccatgagcttcaagatgaa 8942

                                                                        
Query: 278  ggagctcttccaggcgcagaccccggccgacaagatcgtcgaggacgccaccgccgagag 337
            |||| ||||||||| |||||| || || |||||||| || ||||| |||||| | |||| 
Sbjct: 8943 ggagatcttccaggggcagactcccgcggacaagattgtggaggaggccacctcagagaa 9002

                                                                        
Query: 338  cctcgaggggcccgactgggccgccaacctcgaaatctgcgacctcatcaacaccgagca 397
              | || ||||| || ||| | || ||||| |||||||| ||| | |||||||| ||| |
Sbjct: 9003 tttggacgggcctgattggtcggcaaacctggaaatctgtgacttgatcaacacggagaa 9062

                                                                        
Query: 398  ggtgaacagcgtcgacctgatccgcgggatcaagaagcggatcgtgctcaaggaggccag 457
             || ||||| ||||| |||||||| |||||||||||||||||| |||| ||||| || ||
Sbjct: 9063 agttaacagtgtcgagctgatccgtgggatcaagaagcggatcatgctgaaggatgctag 9122

                         
Query: 458  ggtccagttcctc 470
            |||||||| ||||
Sbjct: 9123 ggtccagtacctc 9135
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>dbj|AK066018.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013047D24, full
           insert sequence
          Length = 1624

 Score =  192 bits (97), Expect = 7e-46
 Identities = 259/313 (82%)
 Strand = Plus / Plus

                                                                       
Query: 158 gaaaatgagcgacaatctgatggagaaagtgaacgccctcggcgagcgcctcaagatcac 217
           ||||||||| |||||||||||||| || || | |||| | |||||||| || ||||||||
Sbjct: 253 gaaaatgagtgacaatctgatggacaaggttagcgcctttggcgagcgtctgaagatcac 312

                                                                       
Query: 218 cgggtcggaggtgagcaagcagatgcaggccggcatgagctccatgagcttcaagatgaa 277
            ||||| ||||| |||||| |||||  ||| ||||||  |||||||||||||||||||||
Sbjct: 313 tgggtcagaggttagcaagaagatgacggctggcatgtcctccatgagcttcaagatgaa 372

                                                                       
Query: 278 ggagctcttccaggcgcagaccccggccgacaagatcgtcgaggacgccaccgccgagag 337
           |||| ||||||||| |||||| || || |||||||| || ||||| |||||| | |||| 
Sbjct: 373 ggagatcttccaggggcagactcccgcggacaagattgtggaggaggccacctcagagaa 432

                                                                       
Query: 338 cctcgaggggcccgactgggccgccaacctcgaaatctgcgacctcatcaacaccgagca 397
             | || ||||| || ||| | || ||||| |||||||| ||| | |||||||| ||| |
Sbjct: 433 tttggacgggcctgattggtcggcaaacctggaaatctgtgacttgatcaacacggagaa 492

                                                                       
Query: 398 ggtgaacagcgtcgacctgatccgcgggatcaagaagcggatcgtgctcaaggaggccag 457
            || ||||| ||||| |||||||| |||||||||||||||||| |||| ||||| || ||
Sbjct: 493 agttaacagtgtcgagctgatccgtgggatcaagaagcggatcatgctgaaggatgctag 552

                        
Query: 458 ggtccagttcctc 470
           |||||||| ||||
Sbjct: 553 ggtccagtacctc 565
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>gb|AY104127.1| Zea mays PCO110287 mRNA sequence
          Length = 1870

 Score =  103 bits (52), Expect = 5e-19
 Identities = 247/312 (79%)
 Strand = Plus / Plus

                                                                       
Query: 159 aaaatgagcgacaatctgatggagaaagtgaacgccctcggcgagcgcctcaagatcacc 218
           |||||||| ||||| |||||||| || || | |||| | || |||||| | |||||||||
Sbjct: 332 aaaatgagtgacaacctgatggacaaggttagcgcctttggtgagcgcttgaagatcacc 391

                                                                       
Query: 219 gggtcggaggtgagcaagcagatgcaggccggcatgagctccatgagcttcaagatgaag 278
           ||| | || || |||||  |||||   ||||| |||||||||||||| ||||||||||||
Sbjct: 392 gggacagaagtcagcaaaaagatgactgccggaatgagctccatgagtttcaagatgaag 451

                                                                       
Query: 279 gagctcttccaggcgcagaccccggccgacaagatcgtcgaggacgccaccgccgagagc 338
           ||| | ||||||| |||||| || || |||||||| || ||||  |||||| | |||   
Sbjct: 452 gagttgttccaggggcagactccagctgacaagattgttgagggtgccacctcagaggat 511

                                                                       
Query: 339 ctcgaggggcccgactgggccgccaacctcgaaatctgcgacctcatcaacaccgagcag 398
           || || ||||| ||||||  | | ||| | || || |||||| | |||||||| ||| ||
Sbjct: 512 ctggacgggcctgactggaactcaaacttggagatttgcgacatgatcaacacagagaag 571

                                                                       
Query: 399 gtgaacagcgtcgacctgatccgcgggatcaagaagcggatcgtgctcaaggaggccagg 458
           ||  |||| || || || ||||| |||||||||||| ||||| |||| ||||| || |||
Sbjct: 572 gttgacagtgtggaactcatccgtgggatcaagaagaggatcatgctgaaggatgcgagg 631

                       
Query: 459 gtccagttcctc 470
           ||||||| ||||
Sbjct: 632 gtccagtacctc 643
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>ref|NM_190404.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1296

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 48/51 (94%)
 Strand = Plus / Plus

                                                              
Query: 344 ggggcccgactgggccgccaacctcgaaatctgcgacctcatcaacaccga 394
           ||||||||||||||||| ||||||||||||||||||| |||||||| ||||
Sbjct: 93  ggggcccgactgggccgtcaacctcgaaatctgcgacatcatcaacgccga 143
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 48/51 (94%)
 Strand = Plus / Minus

                                                                   
Query: 344      ggggcccgactgggccgccaacctcgaaatctgcgacctcatcaacaccga 394
                ||||||||||||||||| ||||||||||||||||||| |||||||| ||||
Sbjct: 35311929 ggggcccgactgggccgtcaacctcgaaatctgcgacatcatcaacgccga 35311879
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>dbj|AP003315.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0439E11
          Length = 146083

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 48/51 (94%)
 Strand = Plus / Minus

                                                                
Query: 344   ggggcccgactgggccgccaacctcgaaatctgcgacctcatcaacaccga 394
             ||||||||||||||||| ||||||||||||||||||| |||||||| ||||
Sbjct: 75790 ggggcccgactgggccgtcaacctcgaaatctgcgacatcatcaacgccga 75740
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>dbj|AK070492.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023048B11, full
           insert sequence
          Length = 2092

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 48/51 (94%)
 Strand = Plus / Plus

                                                              
Query: 344 ggggcccgactgggccgccaacctcgaaatctgcgacctcatcaacaccga 394
           ||||||||||||||||| ||||||||||||||||||| |||||||| ||||
Sbjct: 146 ggggcccgactgggccgtcaacctcgaaatctgcgacatcatcaacgccga 196
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>ref|XM_507210.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1705_C03.130 mRNA
          Length = 2657

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 383  catcaacaccgagcaggtgaaca 405
            |||||||||||||||||||||||
Sbjct: 1418 catcaacaccgagcaggtgaaca 1440
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>ref|XM_482094.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1044

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 383 catcaacaccgagcaggtgaaca 405
           |||||||||||||||||||||||
Sbjct: 781 catcaacaccgagcaggtgaaca 759
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>ref|XM_507209.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1705_C03.129
           mRNA
          Length = 1047

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 383 catcaacaccgagcaggtgaaca 405
           |||||||||||||||||||||||
Sbjct: 782 catcaacaccgagcaggtgaaca 760
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 383      catcaacaccgagcaggtgaaca 405
                |||||||||||||||||||||||
Sbjct: 17724379 catcaacaccgagcaggtgaaca 17724357
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>dbj|AP003962.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1705_C03
          Length = 118339

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 383    catcaacaccgagcaggtgaaca 405
              |||||||||||||||||||||||
Sbjct: 109768 catcaacaccgagcaggtgaaca 109746
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>dbj|AK120163.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013031E02, full
            insert sequence
          Length = 2657

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 383  catcaacaccgagcaggtgaaca 405
            |||||||||||||||||||||||
Sbjct: 1418 catcaacaccgagcaggtgaaca 1440
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>dbj|AK099366.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033051C18, full
           insert sequence
          Length = 1044

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 383 catcaacaccgagcaggtgaaca 405
           |||||||||||||||||||||||
Sbjct: 781 catcaacaccgagcaggtgaaca 759
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>dbj|AK061225.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-H02, full
           insert sequence
          Length = 1047

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 383 catcaacaccgagcaggtgaaca 405
           |||||||||||||||||||||||
Sbjct: 782 catcaacaccgagcaggtgaaca 760
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>emb|CT027663.2| Medicago truncatula chromosome 5 clone mth2-139g23, COMPLETE SEQUENCE
          Length = 133229

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 159   aaaatgagcgacaatctgatggagaaagtgaacgc 193
             ||||||||||| ||| ||||||| |||||||||||
Sbjct: 92719 aaaatgagcgataatttgatggaaaaagtgaacgc 92753
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>gb|BT013889.1| Lycopersicon esculentum clone 132874R, mRNA sequence
          Length = 1537

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 252 atgagctccatgagcttcaagatgaaggagctcttcca 289
           |||||||| ||||| |||||||||||||| || |||||
Sbjct: 245 atgagctcgatgagtttcaagatgaaggaacttttcca 282
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 299    cccggccgacaagatcgtcgaggacg 324
              ||||| ||||||||||||||||||||
Sbjct: 505075 cccggtcgacaagatcgtcgaggacg 505100
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 298     ccccggccgacaagatcgtcg 318
               |||||||||||||||||||||
Sbjct: 4397335 ccccggccgacaagatcgtcg 4397355
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>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 351     gactgggccgccaacctcgaa 371
               |||||||||||||||||||||
Sbjct: 1419951 gactgggccgccaacctcgaa 1419931
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 144    cccgccgcggaagcgaaaatgagcgacaa 172
              ||||||||||||||| |||||| ||||||
Sbjct: 940911 cccgccgcggaagcggaaatgatcgacaa 940883
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                             
Query: 345      gggcccgactgggccgccaacctcgaaatctgcgacctcatcaac 389
                |||||||||||| ||  ||||||||| ||||||||| || |||||
Sbjct: 13005911 gggcccgactggtccctcaacctcgagatctgcgacatcctcaac 13005955
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>dbj|AP003763.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0531C01
          Length = 158574

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                          
Query: 345   gggcccgactgggccgccaacctcgaaatctgcgacctcatcaac 389
             |||||||||||| ||  ||||||||| ||||||||| || |||||
Sbjct: 44712 gggcccgactggtccctcaacctcgagatctgcgacatcctcaac 44756
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>dbj|AP003619.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0577H07
          Length = 126757

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                          
Query: 345   gggcccgactgggccgccaacctcgaaatctgcgacctcatcaac 389
             |||||||||||| ||  ||||||||| ||||||||| || |||||
Sbjct: 88288 gggcccgactggtccctcaacctcgagatctgcgacatcctcaac 88332
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>dbj|AK101738.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033061J09, full
           insert sequence
          Length = 2528

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                        
Query: 345 gggcccgactgggccgccaacctcgaaatctgcgacctcatcaac 389
           |||||||||||| ||  ||||||||| ||||||||| || |||||
Sbjct: 190 gggcccgactggtccctcaacctcgagatctgcgacatcctcaac 234
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>dbj|AK058294.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-F02, full
           insert sequence
          Length = 2291

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                        
Query: 345 gggcccgactgggccgccaacctcgaaatctgcgacctcatcaac 389
           |||||||||||| ||  ||||||||| ||||||||| || |||||
Sbjct: 214 gggcccgactggtccctcaacctcgagatctgcgacatcctcaac 258
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>gb|AC134236.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0056G13, complete sequence
          Length = 148011

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 178   tggagaaagtgaacgccctc 197
             ||||||||||||||||||||
Sbjct: 83418 tggagaaagtgaacgccctc 83399
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>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
          Length = 2364842

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 316     tcgaggacgccaccgccgag 335
               ||||||||||||||||||||
Sbjct: 1939671 tcgaggacgccaccgccgag 1939652
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>gb|AC167138.6| Mus musculus chromosome 15, clone RP24-358O3, complete sequence
          Length = 190097

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 115    ctcccctcctcaccccgcctccct 138
              ||||| ||||||||||||||||||
Sbjct: 147799 ctcccatcctcaccccgcctccct 147822
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 299     cccggccgacaagatcgtcg 318
               ||||||||||||||||||||
Sbjct: 2185357 cccggccgacaagatcgtcg 2185338
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>gb|AC166984.7| Mus musculus chromosome 15, clone RP24-359A11, complete sequence
          Length = 167492

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 115   ctcccctcctcaccccgcctccct 138
             ||||| ||||||||||||||||||
Sbjct: 22127 ctcccatcctcaccccgcctccct 22150
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>ref|XM_427363.1| PREDICTED: Gallus gallus similar to RIKEN cDNA 6330414G21
           (LOC429807), partial mRNA
          Length = 699

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 232 gcaagcagatgcaggccggc 251
           ||||||||||||||||||||
Sbjct: 494 gcaagcagatgcaggccggc 513
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 178    tggagaaagtgaacgccctc 197
              ||||||||||||||||||||
Sbjct: 928221 tggagaaagtgaacgccctc 928202
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>ref|XM_542614.2| PREDICTED: Canis familiaris similar to Potassium channel
           tetramerisation domain containing protein 12 (Pfetin)
           (Predominantly fetal expressed T1 domain) (LOC485495),
           mRNA
          Length = 2094

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 115 ctcccctcctcaccccgcct 134
           ||||||||||||||||||||
Sbjct: 719 ctcccctcctcaccccgcct 700
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>gb|AC024475.15| Homo sapiens chromosome 11, clone RP11-702F3, complete sequence
          Length = 191960

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 169    acaatctgatggagaaagtgaacgccctcggc 200
              ||||||||||||||||||| || ||| |||||
Sbjct: 147583 acaatctgatggagaaagtaaaagccatcggc 147614
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>emb|AJ243808.1|BJA243808 Bradyrhizobium japonicum yaeN and ftsH genes
          Length = 3715

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 192  gccctcggcgagcgcctcaagatcaccg 219
            ||||| ||| ||||||||||||||||||
Sbjct: 3186 gcccttggccagcgcctcaagatcaccg 3159
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>gb|AC147179.15| Medicago truncatula clone mth2-142n19, complete sequence
          Length = 113361

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 171   aatctgatggagaaagtgaa 190
             ||||||||||||||||||||
Sbjct: 28497 aatctgatggagaaagtgaa 28516
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>emb|AJ719662.1| Gallus gallus mRNA for hypothetical protein, clone 5b1
          Length = 2375

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 2  aggcaccggcgggcgggcgggcga 25
          ||||| ||||||||||||||||||
Sbjct: 31 aggcagcggcgggcgggcgggcga 54
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>ref|NM_001030385.1| Gallus gallus LSM16 homolog (EDC3, S. cerevisiae) (LSM16), mRNA
          Length = 2375

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 2  aggcaccggcgggcgggcgggcga 25
          ||||| ||||||||||||||||||
Sbjct: 31 aggcagcggcgggcgggcgggcga 54
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>dbj|AK171719.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
           library, clone:F830006G18 product:unclassifiable, full
           insert sequence
          Length = 1548

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 115 ctcccctcctcaccccgcctccct 138
           ||||| ||||||||||||||||||
Sbjct: 93  ctcccatcctcaccccgcctccct 116
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>dbj|AK138747.1| Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched
           library, clone:A430043P11 product:sialyltransferase 4A
           (beta-galactoside alpha-2,3-sialytransferase), full
           insert sequence
          Length = 3110

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 115 ctcccctcctcaccccgcctccct 138
           ||||| ||||||||||||||||||
Sbjct: 41  ctcccatcctcaccccgcctccct 64
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 450     gaggccagggtccagttcctcgcc 473
               |||||| |||||||||||||||||
Sbjct: 3000755 gaggccggggtccagttcctcgcc 3000732
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
              complete sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 178    tggagaaagtgaacgccctc 197
              ||||||||||||||||||||
Sbjct: 928219 tggagaaagtgaacgccctc 928200
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 317     cgaggacgccaccgccgaga 336
               ||||||||||||||||||||
Sbjct: 2446050 cgaggacgccaccgccgaga 2446069
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 79      cgcctgcgagggcctcgccgccgc 102
               ||||||||||| ||||||||||||
Sbjct: 1549898 cgcctgcgaggccctcgccgccgc 1549875
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 192     gccctcggcgagcgcctcaagatcaccg 219
               ||||| ||| ||||||||||||||||||
Sbjct: 7866519 gcccttggccagcgcctcaagatcaccg 7866546
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 314     cgtcgaggacgccaccgccg 333
               ||||||||||||||||||||
Sbjct: 2205770 cgtcgaggacgccaccgccg 2205789
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>dbj|AK104839.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-F01, full
           insert sequence
          Length = 1335

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 178 tggagaaagtgaacgccctc 197
           ||||||||||||||||||||
Sbjct: 912 tggagaaagtgaacgccctc 893
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>dbj|AK068678.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013158H22, full
           insert sequence
          Length = 997

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 178 tggagaaagtgaacgccctc 197
           ||||||||||||||||||||
Sbjct: 457 tggagaaagtgaacgccctc 476
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>dbj|AK066955.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091C10, full
            insert sequence
          Length = 1478

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 178  tggagaaagtgaacgccctc 197
            ||||||||||||||||||||
Sbjct: 1033 tggagaaagtgaacgccctc 1014
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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 313     tcgtcgaggacgccaccgcc 332
               ||||||||||||||||||||
Sbjct: 2376374 tcgtcgaggacgccaccgcc 2376393
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>emb|Z94763.1|HSZ94763 H.sapiens genomic DNA fragment (clone J32A135R)
          Length = 197

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 7  ccggcgggcgggcgggcgaa 26
          ||||||||||||||||||||
Sbjct: 65 ccggcgggcgggcgggcgaa 46


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,120,848
Number of Sequences: 3902068
Number of extensions: 3120848
Number of successful extensions: 74188
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72324
Number of HSP's gapped (non-prelim): 1857
length of query: 476
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 454
effective length of database: 17,147,199,772
effective search space: 7784828696488
effective search space used: 7784828696488
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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