>TBSYN_HYPAN (Q8SAS8) Trihydroxybenzophenone synthase (EC 2.3.1.-)|
          Length = 395

 Score = 32.3 bits (72), Expect = 0.31
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = +1

Query: 25  VKAYSFAGMGCSAGTVGIDMAARLLRVQRRPGYALVVVTENTSLNWYFGNNKHM--LVTN 198
           V+       GC AG   + +A  L          LVV  ENT++ ++  N  H+  +V  
Sbjct: 157 VRRVMLYNQGCFAGGTALRVAKDLAE-NNEGARVLVVCAENTAMTFHAPNESHLDVIVGQ 215

Query: 199 CIFRVGSAAALITDVP 246
            +F  G+AA +I   P
Sbjct: 216 AMFSDGAAALIIGACP 231

>CHSA_IPONI (P48395) Chalcone synthase A (EC 2.3.1.74) (Naringenin-chalcone|
           synthase A) (CHS-A) (Fragment)
          Length = 344

 Score = 30.8 bits (68), Expect = 0.90
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = +1

Query: 52  GCSAGTVGIDMAARLLRVQRRPGYALVVVTENTSLNWYFG---NNKHMLVTNCIFRVGSA 222
           GC+AG   + +A  L   +   G  ++VV     LN + G     +  L+  C+F  GSA
Sbjct: 166 GCNAGAAMLRLAKDL--AENNKGGRVLVVCSEVMLNVFRGPSLEQEDYLLAQCLFGDGSA 223

Query: 223 AALITDVP 246
           A ++   P
Sbjct: 224 AVIVGTEP 231

>SLIT1_HUMAN (O75093) Slit homolog 1 protein precursor (Slit-1) (Multiple|
           epidermal growth factor-like domains 4)
          Length = 1534

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 9/32 (28%)
 Frame = +2

Query: 44  PGWG--AAPAR-------WASTWRRGCCACSA 112
           PGWG  A P R       WA+ WR G  AC A
Sbjct: 5   PGWGSSAGPVRPELWLLLWAAAWRLGASACPA 36

>CHSA_IPOPL (P48400) Chalcone synthase A (EC 2.3.1.74) (Naringenin-chalcone|
           synthase A) (CHS-A) (Fragment)
          Length = 362

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
 Frame = +1

Query: 25  VKAYSFAGMGCSAGTVGIDMAARLLRVQRRPGYALVVVTENTSLNWYFG---NNKHMLVT 195
           VK       GC+AG   + +A  L   +   G  ++VV    +L+ + G     +  L+ 
Sbjct: 158 VKRLMMYQQGCNAGAAMLRLAKDL--AENNKGARVLVVCSEVTLSVFRGPSLQQEDNLLA 215

Query: 196 NCIFRVGSAAALITDVP 246
            C+F  GSAA ++   P
Sbjct: 216 QCLFGDGSAAVIVGTDP 232

>CHSC_IPOPU (P48399) Chalcone synthase C (EC 2.3.1.74) (Naringenin-chalcone|
           synthase C) (CHS-C) (Fragment)
          Length = 352

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = +1

Query: 52  GCSAGTVGIDMAARLLRVQRRPGYALVVVTENTSLNWYFG---NNKHMLVTNCIFRVGSA 222
           GC+AG V + +A  L   +   G  ++VV     L+ + G     +  L+  C+F  GSA
Sbjct: 169 GCNAGAVMLRLAKDL--AENNKGGRVLVVCSEVMLSVFRGPSLQQEDNLLAQCLFGDGSA 226

Query: 223 AALITDVP 246
           A ++   P
Sbjct: 227 AVIVGTEP 234

>CHSB_IPOTF (P48402) Chalcone synthase B (EC 2.3.1.74) (Naringenin-chalcone|
           synthase B) (CHS-B) (Fragment)
          Length = 366

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
 Frame = +1

Query: 13  MKDDVKAYSFAGMGCSAGTVGIDMAARLLRVQRRPGYALVVVTENTSLNWYFG---NNKH 183
           +   VK       GC+AG   + +A  L   +   G  ++VV     L+ + G     + 
Sbjct: 158 LNSSVKRLMMYQQGCNAGAAMLRLAKDL--AENNKGARVLVVCSEVMLSVFRGPSLQQED 215

Query: 184 MLVTNCIFRVGSAAALITDVP 246
            L+  C+F  GSAA +I   P
Sbjct: 216 NLLAQCLFGDGSAAIIIGTDP 236

>SLOU_DROME (P22807) Homeobox protein slou (S59/2) (Protein slouch) (Homeobox|
           protein NK-1)
          Length = 659

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 20/63 (31%), Positives = 23/63 (36%)
 Frame = -2

Query: 192 HQHVLVVPEVPVEAGVLRHHHQRVPRAALHAQQPRRHVDAHRAGAAPHPGEAVRLDVVLH 13
           H H+L  P+    A    HHHQ   +   H   P  H   H     PHP        V H
Sbjct: 185 HPHLLQNPQFLAAAQQHMHHHQH--QHHQHPAHPHSHQHPH---PHPHPHPHPHPSAVFH 239

Query: 12  LEA 4
           L A
Sbjct: 240 LRA 242

>DSX_DROME (P23023) Protein doublesex|
          Length = 549

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 18/48 (37%), Positives = 20/48 (41%)
 Frame = -2

Query: 192 HQHVLVVPEVPVEAGVLRHHHQRVPRAALHAQQPRRHVDAHRAGAAPH 49
           H H  V P  P    +L HHH     A +HA     HV AH A    H
Sbjct: 102 HMHE-VPPANPAATTLLSHHHHVAAPAHVHA----HHVHAHHAHGGHH 144

>CAC1B_RABIT (Q05152) Voltage-dependent N-type calcium channel alpha-1B subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.2)
            (Calcium channel, L type, alpha-1 polypeptide isoform 5)
            (Brain calcium channel III) (BIII)
          Length = 2339

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = -2

Query: 162  PVEAGVLRHHHQRVPRAALHAQQPRRHVDAHRAGAAPHPGE 40
            P   G  RHH +  P  A   ++PRRH  AHR G  P PG+
Sbjct: 915  PCPEGGRRHHRRGSPEEAAE-REPRRH-RAHRHG--PDPGK 951

>ATX2_HUMAN (Q99700) Ataxin-2 (Spinocerebellar ataxia type 2 protein)|
            (Trinucleotide repeat-containing gene 13 protein)
          Length = 1312

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 135  HHQRVPRAALHAQQPRRHVDAHRAGAAPHP 46
            HHQ     ALH   P++    + AG AP P
Sbjct: 1172 HHQHQAAQALHLASPQQQSAIYHAGLAPTP 1201

>ATX2_MOUSE (O70305) Ataxin-2 (Spinocerebellar ataxia type 2 protein homolog)|
          Length = 1285

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 135  HHQRVPRAALHAQQPRRHVDAHRAGAAPHP 46
            HHQ     ALH   P++    + AG AP P
Sbjct: 1146 HHQHQAAQALHLASPQQQSAIYHAGLAPTP 1175

>Y055_MYCLE (O33089) Hypothetical protein ML0055|
          Length = 573

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = -3

Query: 296 CVRSVRSSWYLASARRAGTSVMSAAA----LPTRKMQLVTSMCLLFPKYQLRLVFSVTTT 129
           C RS+  +WYLA ARR+  +  +A A    L T   +   S  L  P Y+L      TTT
Sbjct: 204 CARSI--AWYLAMARRSQGNEDAAVALLEWLQTTHPESKVSAALKDPSYRL------TTT 255

Query: 128 SA 123
           +A
Sbjct: 256 TA 257

>HOY1_YARLI (Q99160) Homeobox protein HOY1|
          Length = 509

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 11/36 (30%), Positives = 14/36 (38%)
 Frame = -2

Query: 177 VVPEVPVEAGVLRHHHQRVPRAALHAQQPRRHVDAH 70
           ++   P    V  HHH R   +  H   P  HV  H
Sbjct: 383 MIEPTPTPTPVANHHHHRSADSVAHVTNPSGHVTNH 418

>BAB1_DROME (Q9W0K7) Protein bric-a-brac 1|
          Length = 977

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 20/78 (25%), Positives = 28/78 (35%), Gaps = 12/78 (15%)
 Frame = -2

Query: 264 GVGPARGHVGXXXXXXXXXXXAVGHQHVL-------VVPEVPVEAGVLRHHHQRVPRA-- 112
           GVG   G  G             G +H         ++P +P    V  HH Q+   A  
Sbjct: 760 GVGNVPGAAGGRASISPALSSGSGPRHAPSPCGPAGLLPNLPPSMAVALHHQQQQQAAHH 819

Query: 111 ---ALHAQQPRRHVDAHR 67
               LH QQ + H+  H+
Sbjct: 820 HMQQLHLQQQQAHLHHHQ 837

>T2R05_RAT (Q9JKT5) Taste receptor type 2 member 105 (T2R105) (T2R9)|
          Length = 309

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 194 VTSMCLLFPKYQLRLVFSVTTTSAYP 117
           V  +C+  P+ +L  +F +TT S YP
Sbjct: 247 VEIICMFIPENKLLFIFGLTTASVYP 272

>FRZE_MYXXA (P18769) Gliding motility regulatory protein (EC 2.7.13.3)|
          Length = 777

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 7/52 (13%)
 Frame = -2

Query: 171 PEVPVEAGVLRHHHQRVPRAALHA-------QQPRRHVDAHRAGAAPHPGEA 37
           P  PV A V+       P A + A       Q P     AH A AAPHP  A
Sbjct: 146 PPAPVAAPVVTPAAVAAPPAPVQAPVAPPPTQAPVAEPGAHAAAAAPHPAAA 197

>TRUA_RHILO (Q98D55) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine|
           isomerase I) (tRNA pseudouridylate synthase I)
          Length = 248

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = -2

Query: 114 AALHAQQPRRHVDAHRAGAAPHPGEAVRLDVVLHLEAA 1
           A +HA     HVD     A P PG+ VR  V  HL+AA
Sbjct: 53  AGVHASAQVAHVDL----AKPWPGDKVRDAVNAHLQAA 86

>BAF1_KLULA (P26375) Transcription factor BAF1 (ARS-binding factor 1) (Protein|
           ABF1) (Bidirectionally acting factor)
          Length = 494

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -2

Query: 192 HQHVLVVPEVPVEAGVLRHHHQRVPRAALHAQQPRRHVDA 73
           HQH L  PE   +   ++HHHQ+  +   H +Q + HVD+
Sbjct: 293 HQHQL--PEG--QQRDVQHHHQQQQQQLQHQEQHQSHVDS 328


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,145,951
Number of Sequences: 219361
Number of extensions: 529000
Number of successful extensions: 2482
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2480
length of database: 80,573,946
effective HSP length: 78
effective length of database: 63,463,788
effective search space used: 1523130912
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)