ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast77a01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AROC_MYCPA (Q741J9) Chorismate synthase (EC 4.2.3.5) (5-enolpyru... 31 0.73
2IPNS_STRJU (P18286) Isopenicillin N synthetase (EC 1.21.3.1) (IP... 30 1.2
3IPNS_STRGR (Q54243) Isopenicillin N synthetase (EC 1.21.3.1) (IP... 30 1.6
4IPNS_EMENI (P05326) Isopenicillin N synthetase (EC 1.21.3.1) (IP... 29 3.6
5G2OX8_ARATH (O49561) Gibberellin 2-beta-dioxygenase 8 (EC 1.14.1... 28 6.2
6IPNS_STRCL (P10621) Isopenicillin N synthetase (EC 1.21.3.1) (IP... 28 8.1
7FA57B_HUMAN (Q71RH2) Protein FAM57B 28 8.1

>AROC_MYCPA (Q741J9) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
          Length = 404

 Score = 31.2 bits (69), Expect = 0.73
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 171 IPVIDLSPLAAGDEAGVDALAAEVGRASRD 260
           +P ID SP+ A DEA   A+ AE+  A +D
Sbjct: 189 LPAIDASPVRAYDEAAEQAMIAEIEAAKKD 218



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>IPNS_STRJU (P18286) Isopenicillin N synthetase (EC 1.21.3.1) (IPNS)|
           (Isopenicillin N synthase)
          Length = 329

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 147 PTLADADGIPVIDLSPLAAGDEAGVDALAAEVGRASR 257
           P L  +  +P ID+SPL+  D      +A E+ +A+R
Sbjct: 2   PILMPSAEVPTIDISPLSGDDAKAKQRVAQEINKAAR 38



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>IPNS_STRGR (Q54243) Isopenicillin N synthetase (EC 1.21.3.1) (IPNS)|
           (Isopenicillin N synthase)
          Length = 329

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 171 IPVIDLSPLAAGDEAGVDALAAEVGRASRD 260
           +P ID+SPL+ GD      +A E+ +A R+
Sbjct: 10  VPTIDISPLSGGDADDKKRVAQEINKACRE 39



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>IPNS_EMENI (P05326) Isopenicillin N synthetase (EC 1.21.3.1) (IPNS)|
           (Isopenicillin N synthase)
          Length = 331

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 171 IPVIDLSPLAAGDEAGVDALAAEVGRASRD 260
           +P ID+SPL   D+A    +A ++  ASRD
Sbjct: 9   VPKIDVSPLFGDDQAAKMRVAQQIDAASRD 38



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>G2OX8_ARATH (O49561) Gibberellin 2-beta-dioxygenase 8 (EC 1.14.11.13)|
           (Gibberellin 2-beta-hydroxylase 8) (Gibberellin
           2-oxidase 8) (GA 2-oxidase 8)
          Length = 293

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 171 IPVIDLSPLAAGDEAGVDALAAEVGRASRDW 263
           +PVID+S L  G E   +     + RASR+W
Sbjct: 42  LPVIDVSRLIDGAEEEREKCKEAIARASREW 72



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>IPNS_STRCL (P10621) Isopenicillin N synthetase (EC 1.21.3.1) (IPNS)|
           (Isopenicillin N synthase)
          Length = 329

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 147 PTLADADGIPVIDLSPLAAGDEAGVDALAAEVGRASR 257
           P L  +  +P ID+SPL   D A    +A E+  A R
Sbjct: 2   PVLMPSAHVPTIDISPLFGTDAAAKKRVAEEIHGACR 38



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>FA57B_HUMAN (Q71RH2) Protein FAM57B|
          Length = 274

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 136 CSGACTKAWPMERPPMA 86
           C GAC   WP  RPP A
Sbjct: 253 CRGACRLFWPRSRPPPA 269


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,244,271
Number of Sequences: 219361
Number of extensions: 347977
Number of successful extensions: 1395
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1395
length of database: 80,573,946
effective HSP length: 63
effective length of database: 66,754,203
effective search space used: 1602100872
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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