ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast77a01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 196 bits (99), Expect = 2e-47 Identities = 156/175 (89%) Strand = Plus / Minus Query: 89 catgggcggcctctccatgggccaggccttcgtgcaggcccccgagcatcgcaccaagcc 148 |||||| ||||||||||||| ||||||||||||||||||||||||||| ||| ||||||| Sbjct: 9161110 catgggtggcctctccatggaccaggccttcgtgcaggcccccgagcaccgcgccaagcc 9161051 Query: 149 gaccctcgccgacgcggacggcatcccggtcatcgacctctcccctctcgccgccggcga 208 | || ||||||| || ||||||||||||||||||||||||||||||||| ||||| ||| Sbjct: 9161050 gtccgtcgccgaggccgacggcatcccggtcatcgacctctcccctctcttcgccgccga 9160991 Query: 209 cgaggccggcgtggacgcgctcgcggccgaggtgggcagggcgagccgggactgg 263 | || | |||||||||||||||||||||||| || |||||||||| ||||||| Sbjct: 9160990 tggggtggacgtggacgcgctcgcggccgaggtcgggagggcgagccaggactgg 9160936 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 cgccggcgacgaggccggcg 219 |||||||||||||||||||| Sbjct: 3063850 cgccggcgacgaggccggcg 3063869
>dbj|AP005799.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0012K14 Length = 155544 Score = 196 bits (99), Expect = 2e-47 Identities = 156/175 (89%) Strand = Plus / Minus Query: 89 catgggcggcctctccatgggccaggccttcgtgcaggcccccgagcatcgcaccaagcc 148 |||||| ||||||||||||| ||||||||||||||||||||||||||| ||| ||||||| Sbjct: 96604 catgggtggcctctccatggaccaggccttcgtgcaggcccccgagcaccgcgccaagcc 96545 Query: 149 gaccctcgccgacgcggacggcatcccggtcatcgacctctcccctctcgccgccggcga 208 | || ||||||| || ||||||||||||||||||||||||||||||||| ||||| ||| Sbjct: 96544 gtccgtcgccgaggccgacggcatcccggtcatcgacctctcccctctcttcgccgccga 96485 Query: 209 cgaggccggcgtggacgcgctcgcggccgaggtgggcagggcgagccgggactgg 263 | || | |||||||||||||||||||||||| || |||||||||| ||||||| Sbjct: 96484 tggggtggacgtggacgcgctcgcggccgaggtcgggagggcgagccaggactgg 96430
>ref|XM_480999.1| Oryza sativa (japonica cultivar-group), mRNA Length = 939 Score = 194 bits (98), Expect = 1e-46 Identities = 155/174 (89%) Strand = Plus / Plus Query: 90 atgggcggcctctccatgggccaggccttcgtgcaggcccccgagcatcgcaccaagccg 149 ||||| ||||||||||||| ||||||||||||||||||||||||||| ||| |||||||| Sbjct: 1 atgggtggcctctccatggaccaggccttcgtgcaggcccccgagcaccgcgccaagccg 60 Query: 150 accctcgccgacgcggacggcatcccggtcatcgacctctcccctctcgccgccggcgac 209 || ||||||| || ||||||||||||||||||||||||||||||||| ||||| ||| Sbjct: 61 tccgtcgccgaggccgacggcatcccggtcatcgacctctcccctctcttcgccgccgat 120 Query: 210 gaggccggcgtggacgcgctcgcggccgaggtgggcagggcgagccgggactgg 263 | || | |||||||||||||||||||||||| || |||||||||| ||||||| Sbjct: 121 ggggtggacgtggacgcgctcgcggccgaggtcgggagggcgagccaggactgg 174
>gb|AC107206.4| Oryza sativa chromosome 3 BAC OSJNBa0063J18 genomic sequence, complete sequence Length = 154558 Score = 172 bits (87), Expect = 4e-40 Identities = 162/185 (87%), Gaps = 9/185 (4%) Strand = Plus / Minus Query: 88 ccatgggcggcctctccatgggccaggccttcgtgcaggcccccgagcatcgcaccaagc 147 ||||||||||||||||||||| |||||| |||||||||||||||||||| ||| ||||| Sbjct: 96128 ccatgggcggcctctccatggaccaggcgttcgtgcaggcccccgagcaccgccccaagg 96069 Query: 148 cgaccctcgccgacgcggacggcatcccggtcatcgacctctcccct---ctcgccgccg 204 || || ||||||| || |||||||||||||||||||||||||||||| |||||||||| Sbjct: 96068 cgtccgtcgccgaggccgacggcatcccggtcatcgacctctcccctctcctcgccgccg 96009 Query: 205 gcga---cgaggc---cggcgtggacgcgctcgcggccgaggtgggcagggcgagccggg 258 |||| ||| || ||| ||||||||||||||||| ||||| || ||||||||||||| Sbjct: 96008 gcgatggcgacgccgacggggtggacgcgctcgcggcggaggtcgggagggcgagccggg 95949 Query: 259 actgg 263 ||||| Sbjct: 95948 actgg 95944
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 172 bits (87), Expect = 4e-40 Identities = 162/185 (87%), Gaps = 9/185 (4%) Strand = Plus / Minus Query: 88 ccatgggcggcctctccatgggccaggccttcgtgcaggcccccgagcatcgcaccaagc 147 ||||||||||||||||||||| |||||| |||||||||||||||||||| ||| ||||| Sbjct: 23259647 ccatgggcggcctctccatggaccaggcgttcgtgcaggcccccgagcaccgccccaagg 23259588 Query: 148 cgaccctcgccgacgcggacggcatcccggtcatcgacctctcccct---ctcgccgccg 204 || || ||||||| || |||||||||||||||||||||||||||||| |||||||||| Sbjct: 23259587 cgtccgtcgccgaggccgacggcatcccggtcatcgacctctcccctctcctcgccgccg 23259528 Query: 205 gcga---cgaggc---cggcgtggacgcgctcgcggccgaggtgggcagggcgagccggg 258 |||| ||| || ||| ||||||||||||||||| ||||| || ||||||||||||| Sbjct: 23259527 gcgatggcgacgccgacggggtggacgcgctcgcggcggaggtcgggagggcgagccggg 23259468 Query: 259 actgg 263 ||||| Sbjct: 23259467 actgg 23259463 Score = 52.0 bits (26), Expect = 9e-04 Identities = 32/34 (94%) Strand = Plus / Minus Query: 155 cgccgacgcggacggcatcccggtcatcgacctc 188 ||||||||| |||| ||||||||||||||||||| Sbjct: 27290619 cgccgacgccgacgccatcccggtcatcgacctc 27290586 Score = 42.1 bits (21), Expect = 0.86 Identities = 21/21 (100%) Strand = Plus / Minus Query: 196 tcgccgccggcgacgaggccg 216 ||||||||||||||||||||| Sbjct: 3487748 tcgccgccggcgacgaggccg 3487728
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 172 bits (87), Expect = 4e-40 Identities = 162/185 (87%), Gaps = 9/185 (4%) Strand = Plus / Minus Query: 88 ccatgggcggcctctccatgggccaggccttcgtgcaggcccccgagcatcgcaccaagc 147 ||||||||||||||||||||| |||||| |||||||||||||||||||| ||| ||||| Sbjct: 23252675 ccatgggcggcctctccatggaccaggcgttcgtgcaggcccccgagcaccgccccaagg 23252616 Query: 148 cgaccctcgccgacgcggacggcatcccggtcatcgacctctcccct---ctcgccgccg 204 || || ||||||| || |||||||||||||||||||||||||||||| |||||||||| Sbjct: 23252615 cgtccgtcgccgaggccgacggcatcccggtcatcgacctctcccctctcctcgccgccg 23252556 Query: 205 gcga---cgaggc---cggcgtggacgcgctcgcggccgaggtgggcagggcgagccggg 258 |||| ||| || ||| ||||||||||||||||| ||||| || ||||||||||||| Sbjct: 23252555 gcgatggcgacgccgacggggtggacgcgctcgcggcggaggtcgggagggcgagccggg 23252496 Query: 259 actgg 263 ||||| Sbjct: 23252495 actgg 23252491 Score = 52.0 bits (26), Expect = 9e-04 Identities = 32/34 (94%) Strand = Plus / Minus Query: 155 cgccgacgcggacggcatcccggtcatcgacctc 188 ||||||||| |||| ||||||||||||||||||| Sbjct: 27381942 cgccgacgccgacgccatcccggtcatcgacctc 27381909 Score = 42.1 bits (21), Expect = 0.86 Identities = 21/21 (100%) Strand = Plus / Minus Query: 196 tcgccgccggcgacgaggccg 216 ||||||||||||||||||||| Sbjct: 3487859 tcgccgccggcgacgaggccg 3487839
>dbj|AK073307.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033026A10, full insert sequence Length = 1337 Score = 172 bits (87), Expect = 4e-40 Identities = 162/185 (87%), Gaps = 9/185 (4%) Strand = Plus / Plus Query: 88 ccatgggcggcctctccatgggccaggccttcgtgcaggcccccgagcatcgcaccaagc 147 ||||||||||||||||||||| |||||| |||||||||||||||||||| ||| ||||| Sbjct: 65 ccatgggcggcctctccatggaccaggcgttcgtgcaggcccccgagcaccgccccaagg 124 Query: 148 cgaccctcgccgacgcggacggcatcccggtcatcgacctctcccctctc---gccgccg 204 || || ||||||| || ||||||||||||||||||||||||||||||||| ||||||| Sbjct: 125 cgtccgtcgccgaggccgacggcatcccggtcatcgacctctcccctctcctcgccgccg 184 Query: 205 gcga---cgaggc---cggcgtggacgcgctcgcggccgaggtgggcagggcgagccggg 258 |||| ||| || ||| ||||||||||||||||| ||||| || ||||||||||||| Sbjct: 185 gcgatggcgacgccgacggggtggacgcgctcgcggcggaggtcgggagggcgagccggg 244 Query: 259 actgg 263 ||||| Sbjct: 245 actgg 249
>dbj|AK063917.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-B03, full insert sequence Length = 1449 Score = 89.7 bits (45), Expect = 4e-15 Identities = 66/73 (90%) Strand = Plus / Plus Query: 88 ccatgggcggcctctccatgggccaggccttcgtgcaggcccccgagcatcgcaccaagc 147 ||||||||||||||||||||| |||||| |||||||||||||||||||| ||| ||||| Sbjct: 62 ccatgggcggcctctccatggaccaggcgttcgtgcaggcccccgagcaccgccccaagg 121 Query: 148 cgaccctcgccga 160 || || ||||||| Sbjct: 122 cgtccgtcgccga 134 Score = 65.9 bits (33), Expect = 6e-08 Identities = 42/45 (93%) Strand = Plus / Plus Query: 219 gtggacgcgctcgcggccgaggtgggcagggcgagccgggactgg 263 ||||||||||||||||| ||||| || |||||||||||||||||| Sbjct: 311 gtggacgcgctcgcggcggaggtcgggagggcgagccgggactgg 355
>gb|AC097277.6| Oryza sativa chromosome 3 BAC OSJNBa0022C08 genomic sequence, complete sequence Length = 150155 Score = 52.0 bits (26), Expect = 9e-04 Identities = 32/34 (94%) Strand = Plus / Plus Query: 155 cgccgacgcggacggcatcccggtcatcgacctc 188 ||||||||| |||| ||||||||||||||||||| Sbjct: 13776 cgccgacgccgacgccatcccggtcatcgacctc 13809
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 52.0 bits (26), Expect = 9e-04 Identities = 26/26 (100%) Strand = Plus / Plus Query: 202 ccggcgacgaggccggcgtggacgcg 227 |||||||||||||||||||||||||| Sbjct: 3445132 ccggcgacgaggccggcgtggacgcg 3445157
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 48.1 bits (24), Expect = 0.014 Identities = 24/24 (100%) Strand = Plus / Minus Query: 60 gatctgctgatcgccgatctcgac 83 |||||||||||||||||||||||| Sbjct: 3663580 gatctgctgatcgccgatctcgac 3663557
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 48.1 bits (24), Expect = 0.014 Identities = 27/28 (96%) Strand = Plus / Minus Query: 181 tcgacctctcccctctcgccgccggcga 208 |||||||||||||||||||| ||||||| Sbjct: 7030809 tcgacctctcccctctcgcccccggcga 7030782 Score = 42.1 bits (21), Expect = 0.86 Identities = 21/21 (100%) Strand = Plus / Plus Query: 78 ctcgacatcgccatgggcggc 98 ||||||||||||||||||||| Sbjct: 5747795 ctcgacatcgccatgggcggc 5747815
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 48.1 bits (24), Expect = 0.014 Identities = 24/24 (100%) Strand = Plus / Minus Query: 206 cgacgaggccggcgtggacgcgct 229 |||||||||||||||||||||||| Sbjct: 3287903 cgacgaggccggcgtggacgcgct 3287880 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 cgccggcgacgaggccggcg 219 |||||||||||||||||||| Sbjct: 1302753 cgccggcgacgaggccggcg 1302734
>ref|XM_464672.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1856 Score = 46.1 bits (23), Expect = 0.055 Identities = 23/23 (100%) Strand = Plus / Minus Query: 198 gccgccggcgacgaggccggcgt 220 ||||||||||||||||||||||| Sbjct: 615 gccgccggcgacgaggccggcgt 593
>gb|AC123527.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0068G15, complete sequence Length = 146175 Score = 46.1 bits (23), Expect = 0.055 Identities = 35/39 (89%) Strand = Plus / Plus Query: 216 ggcgtggacgcgctcgcggccgaggtgggcagggcgagc 254 |||| ||||| ||| | |||||||||||||||||||||| Sbjct: 41319 ggcggggacgagctggaggccgaggtgggcagggcgagc 41357
>emb|X54638.1|BJGLYA B. japonicum glyA gene for serine hydroxymethyltransferase Length = 2564 Score = 46.1 bits (23), Expect = 0.055 Identities = 23/23 (100%) Strand = Plus / Minus Query: 197 cgccgccggcgacgaggccggcg 219 ||||||||||||||||||||||| Sbjct: 1701 cgccgccggcgacgaggccggcg 1679
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 46.1 bits (23), Expect = 0.055 Identities = 35/39 (89%) Strand = Plus / Plus Query: 216 ggcgtggacgcgctcgcggccgaggtgggcagggcgagc 254 |||| ||||| ||| | |||||||||||||||||||||| Sbjct: 1765399 ggcggggacgagctggaggccgaggtgggcagggcgagc 1765437 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 196 tcgccgccggcgacgaggccggcg 219 ||||||||| |||||||||||||| Sbjct: 19820751 tcgccgccgtcgacgaggccggcg 19820774
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 46.1 bits (23), Expect = 0.055 Identities = 35/39 (89%) Strand = Plus / Plus Query: 216 ggcgtggacgcgctcgcggccgaggtgggcagggcgagc 254 |||| ||||| ||| | |||||||||||||||||||||| Sbjct: 1823489 ggcggggacgagctggaggccgaggtgggcagggcgagc 1823527
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 46.1 bits (23), Expect = 0.055 Identities = 23/23 (100%) Strand = Plus / Minus Query: 198 gccgccggcgacgaggccggcgt 220 ||||||||||||||||||||||| Sbjct: 6637687 gccgccggcgacgaggccggcgt 6637665
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 46.1 bits (23), Expect = 0.055 Identities = 23/23 (100%) Strand = Plus / Plus Query: 197 cgccgccggcgacgaggccggcg 219 ||||||||||||||||||||||| Sbjct: 5579382 cgccgccggcgacgaggccggcg 5579404 Score = 42.1 bits (21), Expect = 0.86 Identities = 24/25 (96%) Strand = Plus / Plus Query: 79 tcgacatcgccatgggcggcctctc 103 |||||||||||||||||||| |||| Sbjct: 5054032 tcgacatcgccatgggcggcgtctc 5054056
>dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0027A02 Length = 140402 Score = 46.1 bits (23), Expect = 0.055 Identities = 23/23 (100%) Strand = Plus / Minus Query: 198 gccgccggcgacgaggccggcgt 220 ||||||||||||||||||||||| Sbjct: 72062 gccgccggcgacgaggccggcgt 72040
>dbj|AK106901.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-118-H08, full insert sequence Length = 2128 Score = 46.1 bits (23), Expect = 0.055 Identities = 35/39 (89%) Strand = Plus / Minus Query: 216 ggcgtggacgcgctcgcggccgaggtgggcagggcgagc 254 |||| ||||| ||| | |||||||||||||||||||||| Sbjct: 1306 ggcggggacgagctggaggccgaggtgggcagggcgagc 1268
>dbj|AK105964.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-E05, full insert sequence Length = 1856 Score = 46.1 bits (23), Expect = 0.055 Identities = 23/23 (100%) Strand = Plus / Minus Query: 198 gccgccggcgacgaggccggcgt 220 ||||||||||||||||||||||| Sbjct: 615 gccgccggcgacgaggccggcgt 593
>dbj|AK073051.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033000F22, full insert sequence Length = 2436 Score = 46.1 bits (23), Expect = 0.055 Identities = 35/39 (89%) Strand = Plus / Plus Query: 216 ggcgtggacgcgctcgcggccgaggtgggcagggcgagc 254 |||| ||||| ||| | |||||||||||||||||||||| Sbjct: 754 ggcggggacgagctggaggccgaggtgggcagggcgagc 792
>emb|AM181540.1| Microbacterium aurum partial ppk gene for polyphosphatkinase, type strain DSM 8600 Length = 1382 Score = 46.1 bits (23), Expect = 0.055 Identities = 26/27 (96%) Strand = Plus / Plus Query: 60 gatctgctgatcgccgatctcgacatc 86 ||||||||||||||||| ||||||||| Sbjct: 349 gatctgctgatcgccgaactcgacatc 375
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 46.1 bits (23), Expect = 0.055 Identities = 35/39 (89%) Strand = Plus / Plus Query: 216 ggcgtggacgcgctcgcggccgaggtgggcagggcgagc 254 |||| ||||| ||| | |||||||||||||||||||||| Sbjct: 1821210 ggcggggacgagctggaggccgaggtgggcagggcgagc 1821248
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 46.1 bits (23), Expect = 0.055 Identities = 35/39 (89%) Strand = Plus / Plus Query: 216 ggcgtggacgcgctcgcggccgaggtgggcagggcgagc 254 |||| ||||| ||| | |||||||||||||||||||||| Sbjct: 1765377 ggcggggacgagctggaggccgaggtgggcagggcgagc 1765415 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 196 tcgccgccggcgacgaggccggcg 219 ||||||||| |||||||||||||| Sbjct: 19746965 tcgccgccgtcgacgaggccggcg 19746988
>emb|BX000502.2|CNS08CDS Oryza sativa chromosome 12, . BAC OSJNBb0041E01 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132026 Score = 46.1 bits (23), Expect = 0.055 Identities = 35/39 (89%) Strand = Plus / Minus Query: 216 ggcgtggacgcgctcgcggccgaggtgggcagggcgagc 254 |||| ||||| ||| | |||||||||||||||||||||| Sbjct: 75083 ggcggggacgagctggaggccgaggtgggcagggcgagc 75045
>emb|BX000504.2|CNS08CDU Oryza sativa chromosome 12, . BAC OJ1239_F07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 104307 Score = 46.1 bits (23), Expect = 0.055 Identities = 35/39 (89%) Strand = Plus / Minus Query: 216 ggcgtggacgcgctcgcggccgaggtgggcagggcgagc 254 |||| ||||| ||| | |||||||||||||||||||||| Sbjct: 1522 ggcggggacgagctggaggccgaggtgggcagggcgagc 1484
>gb|BT017730.1| Zea mays clone EL01N0448B11.c mRNA sequence Length = 871 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Minus Query: 197 cgccgccggcgacgaggccggc 218 |||||||||||||||||||||| Sbjct: 51 cgccgccggcgacgaggccggc 30
>emb|AL606595.4|OSJN00035 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0044K18, complete sequence Length = 176615 Score = 44.1 bits (22), Expect = 0.22 Identities = 25/26 (96%) Strand = Plus / Plus Query: 191 ccctctcgccgccggcgacgaggccg 216 ||||| |||||||||||||||||||| Sbjct: 57082 ccctcccgccgccggcgacgaggccg 57107
>gb|AE005967.1| Caulobacter crescentus CB15 section 293 of 359 of the complete genome Length = 10677 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Minus Query: 77 tctcgacatcgccatgggcggc 98 |||||||||||||||||||||| Sbjct: 3729 tctcgacatcgccatgggcggc 3708
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.22 Identities = 25/26 (96%) Strand = Plus / Plus Query: 191 ccctctcgccgccggcgacgaggccg 216 ||||| |||||||||||||||||||| Sbjct: 23892209 ccctcccgccgccggcgacgaggccg 23892234
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.22 Identities = 25/26 (96%) Strand = Plus / Plus Query: 191 ccctctcgccgccggcgacgaggccg 216 ||||| |||||||||||||||||||| Sbjct: 11305921 ccctcccgccgccggcgacgaggccg 11305946
>dbj|AP002873.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0552C05 Length = 136586 Score = 44.1 bits (22), Expect = 0.22 Identities = 25/26 (96%) Strand = Plus / Plus Query: 191 ccctctcgccgccggcgacgaggccg 216 ||||| |||||||||||||||||||| Sbjct: 19506 ccctcccgccgccggcgacgaggccg 19531
>dbj|AP002871.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0475H04 Length = 143337 Score = 44.1 bits (22), Expect = 0.22 Identities = 25/26 (96%) Strand = Plus / Plus Query: 191 ccctctcgccgccggcgacgaggccg 216 ||||| |||||||||||||||||||| Sbjct: 93326 ccctcccgccgccggcgacgaggccg 93351
>dbj|AK099995.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013132J01, full insert sequence Length = 1262 Score = 44.1 bits (22), Expect = 0.22 Identities = 25/26 (96%) Strand = Plus / Minus Query: 191 ccctctcgccgccggcgacgaggccg 216 ||||| |||||||||||||||||||| Sbjct: 145 ccctcccgccgccggcgacgaggccg 120
>dbj|AK061087.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-G06, full insert sequence Length = 1030 Score = 44.1 bits (22), Expect = 0.22 Identities = 25/26 (96%) Strand = Plus / Minus Query: 191 ccctctcgccgccggcgacgaggccg 216 ||||| |||||||||||||||||||| Sbjct: 138 ccctcccgccgccggcgacgaggccg 113
>ref|NM_187741.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3594 Score = 42.1 bits (21), Expect = 0.86 Identities = 21/21 (100%) Strand = Plus / Minus Query: 196 tcgccgccggcgacgaggccg 216 ||||||||||||||||||||| Sbjct: 506 tcgccgccggcgacgaggccg 486
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 42.1 bits (21), Expect = 0.86 Identities = 24/25 (96%) Strand = Plus / Plus Query: 57 cttgatctgctgatcgccgatctcg 81 ||||||||||| ||||||||||||| Sbjct: 5332506 cttgatctgctcatcgccgatctcg 5332530 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 ctcgacatcgccatgggcgg 97 |||||||||||||||||||| Sbjct: 6018387 ctcgacatcgccatgggcgg 6018406
>gb|AY261359.1| Bovine herpesvirus 5 strain SV507/99, complete genome Length = 138390 Score = 42.1 bits (21), Expect = 0.86 Identities = 21/21 (100%) Strand = Plus / Plus Query: 220 tggacgcgctcgcggccgagg 240 ||||||||||||||||||||| Sbjct: 34204 tggacgcgctcgcggccgagg 34224
>emb|Z78205.1|BHT1UL Bovine herpesvirus type 1 UL22-35 genes Length = 37000 Score = 42.1 bits (21), Expect = 0.86 Identities = 21/21 (100%) Strand = Plus / Plus Query: 220 tggacgcgctcgcggccgagg 240 ||||||||||||||||||||| Sbjct: 2281 tggacgcgctcgcggccgagg 2301
>emb|AJ004801.1|BHV1CGEN Bovine herpesvirus type 1.1 complete genome Length = 135301 Score = 42.1 bits (21), Expect = 0.86 Identities = 21/21 (100%) Strand = Plus / Plus Query: 220 tggacgcgctcgcggccgagg 240 ||||||||||||||||||||| Sbjct: 33081 tggacgcgctcgcggccgagg 33101
>emb|AL591792.1|SME591792 Sinorhizobium meliloti 1021 complete chromosome; segment 11/12 Length = 333800 Score = 42.1 bits (21), Expect = 0.86 Identities = 21/21 (100%) Strand = Plus / Plus Query: 78 ctcgacatcgccatgggcggc 98 ||||||||||||||||||||| Sbjct: 3269 ctcgacatcgccatgggcggc 3289
>gb|AC162467.6| Mus musculus 10 BAC RP24-528H20 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 172752 Score = 42.1 bits (21), Expect = 0.86 Identities = 21/21 (100%) Strand = Plus / Plus Query: 99 ctctccatgggccaggccttc 119 ||||||||||||||||||||| Sbjct: 37530 ctctccatgggccaggccttc 37550
>emb|AJ319659.1|TAE319659 Triticum aestivum mRNA for adenosine diphosphate glucose pyrophosphatase Length = 642 Score = 42.1 bits (21), Expect = 0.86 Identities = 21/21 (100%) Strand = Plus / Plus Query: 78 ctcgacatcgccatgggcggc 98 ||||||||||||||||||||| Sbjct: 277 ctcgacatcgccatgggcggc 297
>emb|BX470161.8| Zebrafish DNA sequence from clone RP71-84I2, complete sequence Length = 197615 Score = 42.1 bits (21), Expect = 0.86 Identities = 21/21 (100%) Strand = Plus / Plus Query: 78 ctcgacatcgccatgggcggc 98 ||||||||||||||||||||| Sbjct: 17396 ctcgacatcgccatgggcggc 17416
>gb|AE005862.1| Caulobacter crescentus CB15 section 188 of 359 of the complete genome Length = 10016 Score = 42.1 bits (21), Expect = 0.86 Identities = 21/21 (100%) Strand = Plus / Plus Query: 196 tcgccgccggcgacgaggccg 216 ||||||||||||||||||||| Sbjct: 6359 tcgccgccggcgacgaggccg 6379
>gb|AC104428.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1123F12, complete sequence Length = 103330 Score = 42.1 bits (21), Expect = 0.86 Identities = 21/21 (100%) Strand = Plus / Plus Query: 196 tcgccgccggcgacgaggccg 216 ||||||||||||||||||||| Sbjct: 22627 tcgccgccggcgacgaggccg 22647
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 0.86 Identities = 27/29 (93%) Strand = Plus / Minus Query: 215 cggcgtggacgcgctcgcggccgaggtgg 243 ||||||||||||| |||||| |||||||| Sbjct: 1371229 cggcgtggacgcggtcgcggtcgaggtgg 1371201 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 cgccggcgacgaggccggcg 219 |||||||||||||||||||| Sbjct: 4991718 cgccggcgacgaggccggcg 4991737 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 cgaggccggcgtggacgcgc 228 |||||||||||||||||||| Sbjct: 4338546 cgaggccggcgtggacgcgc 4338565 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 cgtggacgcgctcgcggccg 237 |||||||||||||||||||| Sbjct: 1784773 cgtggacgcgctcgcggccg 1784754 Score = 40.1 bits (20), Expect = 3.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 198 gccgccggcgacgaggccggcgtggacg 225 |||| |||||||||||||||||| |||| Sbjct: 394795 gccgtcggcgacgaggccggcgtcgacg 394768
>gb|AC107225.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0026H19, complete sequence Length = 150620 Score = 42.1 bits (21), Expect = 0.86 Identities = 21/21 (100%) Strand = Plus / Minus Query: 196 tcgccgccggcgacgaggccg 216 ||||||||||||||||||||| Sbjct: 5401 tcgccgccggcgacgaggccg 5381
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 42.1 bits (21), Expect = 0.86 Identities = 21/21 (100%) Strand = Plus / Plus Query: 78 ctcgacatcgccatgggcggc 98 ||||||||||||||||||||| Sbjct: 4279737 ctcgacatcgccatgggcggc 4279757 Score = 40.1 bits (20), Expect = 3.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 71 cgccgatctcgacatcgccatgggcggc 98 ||||||| ||| |||||||||||||||| Sbjct: 2010671 cgccgatatcggcatcgccatgggcggc 2010644
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 42.1 bits (21), Expect = 0.86 Identities = 21/21 (100%) Strand = Plus / Plus Query: 153 ctcgccgacgcggacggcatc 173 ||||||||||||||||||||| Sbjct: 2077984 ctcgccgacgcggacggcatc 2078004
>ref|XM_480142.1| Oryza sativa (japonica cultivar-group), mRNA Length = 750 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 cgccggcgacgaggccggcg 219 |||||||||||||||||||| Sbjct: 340 cgccggcgacgaggccggcg 321
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 154 tcgccgacgcggacggcatcccgg 177 |||||| ||||||||||||||||| Sbjct: 532973 tcgccggcgcggacggcatcccgg 532950
>gb|AC097111.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1014_C08, complete sequence Length = 95638 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 cccctctcgccgccggcgac 209 |||||||||||||||||||| Sbjct: 51569 cccctctcgccgccggcgac 51588
>gb|AC161231.7| Mus musculus chromosome 5, clone RP24-241P24, complete sequence Length = 193682 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 cctctccatgggccaggcct 117 |||||||||||||||||||| Sbjct: 12565 cctctccatgggccaggcct 12584
>gb|AC161348.2| Mus musculus chromosome 5, clone RP23-393E10, complete sequence Length = 221768 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 cctctccatgggccaggcct 117 |||||||||||||||||||| Sbjct: 30846 cctctccatgggccaggcct 30827
>gb|AC068950.11| Oryza sativa chromosome 10 BAC OSJNBa0041P03 genomic sequence, complete sequence Length = 139614 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 cctctcccctctcgccgccg 204 |||||||||||||||||||| Sbjct: 115678 cctctcccctctcgccgccg 115659
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 196 tcgccgccggcgacgaggccggcg 219 ||||||||||||||| |||||||| Sbjct: 2995876 tcgccgccggcgacgtggccggcg 2995853
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 tcgtgcaggcccccgagcat 137 |||||||||||||||||||| Sbjct: 2640012 tcgtgcaggcccccgagcat 2639993
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 tctgctgatcgccgatctcg 81 |||||||||||||||||||| Sbjct: 1186238 tctgctgatcgccgatctcg 1186257
>tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome Length = 143461 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 acgaggccggcgtggacgcg 227 |||||||||||||||||||| Sbjct: 26234 acgaggccggcgtggacgcg 26253
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 cctctcccctctcgccgccg 204 |||||||||||||||||||| Sbjct: 18235492 cctctcccctctcgccgccg 18235511
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 tcgccgccggcgacgaggcc 215 |||||||||||||||||||| Sbjct: 27567232 tcgccgccggcgacgaggcc 27567213
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 cccctctcgccgccggcgac 209 |||||||||||||||||||| Sbjct: 26354216 cccctctcgccgccggcgac 26354235
>gb|AC134985.11| Mus musculus chromosome 5, clone RP24-432L3, complete sequence Length = 199782 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 cctctccatgggccaggcct 117 |||||||||||||||||||| Sbjct: 73144 cctctccatgggccaggcct 73163
>dbj|AP005184.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0047B07 Length = 157797 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 tcgccgccggcgacgaggcc 215 |||||||||||||||||||| Sbjct: 24225 tcgccgccggcgacgaggcc 24206
>dbj|AP005182.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0018C07 Length = 141707 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 tcgccgccggcgacgaggcc 215 |||||||||||||||||||| Sbjct: 131203 tcgccgccggcgacgaggcc 131184
>dbj|AP005467.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1349_D05 Length = 174478 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 cgccggcgacgaggccggcg 219 |||||||||||||||||||| Sbjct: 114573 cgccggcgacgaggccggcg 114592
>dbj|AP003940.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1066_B03 Length = 115339 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 cgccggcgacgaggccggcg 219 |||||||||||||||||||| Sbjct: 23334 cgccggcgacgaggccggcg 23353
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 196 tcgccgccggcgacgaggccggcg 219 |||||| ||||||||||||||||| Sbjct: 102925 tcgccgtcggcgacgaggccggcg 102948
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 3.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 71 cgccgatctcgacatcgccatgggcggc 98 ||||||| ||| |||||||||||||||| Sbjct: 681405 cgccgatatcggcatcgccatgggcggc 681378
>emb|AM181553.1| Microbacterium laevaniformans partial ppk gene for polyphosphatkinase, type strain DSM 20140 Length = 1377 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 63 ctgctgatcgccgatctcgacatc 86 |||||||||||||| ||||||||| Sbjct: 352 ctgctgatcgccgaactcgacatc 375
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 gccggcgacgaggccggcgt 220 |||||||||||||||||||| Sbjct: 2591506 gccggcgacgaggccggcgt 2591487
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 cctctcccctctcgccgccg 204 |||||||||||||||||||| Sbjct: 18244745 cctctcccctctcgccgccg 18244764
>emb|AL713931.5|CNS07YP8 Oryza sativa chromosome 12, . BAC OSJNBa0035B12 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 161160 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 196 tcgccgccggcgacgaggccggcg 219 ||||||||| |||||||||||||| Sbjct: 97637 tcgccgccgtcgacgaggccggcg 97660
>gb|L24487.1|SH1DNAPOLA Pseudorabies virus DNA polymerase gene, partial cds Length = 3144 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 acgaggccggcgtggacgcg 227 |||||||||||||||||||| Sbjct: 629 acgaggccggcgtggacgcg 648
>gb|M21694.1|APHOVP1I2 Foot and mouth disease virus (serotype O) variant VP1 capsid protein gene, partial cds Length = 204 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 ggtgggcagggcgagccggg 258 |||||||||||||||||||| Sbjct: 36 ggtgggcagggcgagccggg 17 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,665,129 Number of Sequences: 3902068 Number of extensions: 1665129 Number of successful extensions: 71415 Number of sequences better than 10.0: 79 Number of HSP's better than 10.0 without gapping: 86 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67493 Number of HSP's gapped (non-prelim): 3919 length of query: 263 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 241 effective length of database: 17,147,199,772 effective search space: 4132475145052 effective search space used: 4132475145052 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
