ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast76h05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY857762.1| Triticum monococcum peroxidase 8 (POX8) mRNA, com... 258 7e-66
2ref|NM_183815.1| Oryza sativa (japonica cultivar-group), predic... 60 3e-06
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 60 3e-06
4dbj|AP002971.2| Oryza sativa (japonica cultivar-group) genomic D... 60 3e-06
5dbj|AP004358.5| Oryza sativa (japonica cultivar-group) genomic D... 60 3e-06
6dbj|AK121616.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 3e-06
7tpe|BN000543.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 60 3e-06
8emb|AJ401274.1|ZMA401274 Zea mays mRNA for peroxidase (pox1 gene) 58 1e-05
9ref|NM_183810.1| Oryza sativa (japonica cultivar-group), predic... 52 8e-04
10dbj|AK068894.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 8e-04
11tpe|BN000541.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 52 8e-04
12ref|NM_183816.1| Oryza sativa (japonica cultivar-group), predic... 50 0.003
13dbj|AK099187.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.003
14dbj|AK070715.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.003
15tpe|BN000544.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 50 0.003
16dbj|AK060115.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.012
17gb|BC056999.1| Mus musculus neuropathy target esterase, mRNA (cD... 42 0.73
18gb|BC054789.1| Mus musculus neuropathy target esterase, mRNA (cD... 42 0.73
19dbj|AK162641.1| Mus musculus adult male bone cDNA, RIKEN full-le... 42 0.73
20dbj|AK040720.1| Mus musculus adult male aorta and vein cDNA, RIK... 42 0.73
21dbj|AK089095.1| Mus musculus 2 days neonate thymus thymic cells ... 42 0.73
22gb|AF173829.1|AF173829 Mus musculus neuropathy target esterase h... 42 0.73
23ref|NM_015801.1| Mus musculus neuropathy target esterase (Nte), ... 42 0.73
24gb|AC170806.2| Mus musculus BAC clone RP24-363P6 from chromosome... 42 0.73
25gb|AY816748.1| Synthetic construct clone pcNiV-Fopt C-terminal-A... 40 2.9
26gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 2.9
27gb|AC132936.9| Homo sapiens chromosome 11, clone RP13-569C6, com... 40 2.9
28dbj|AP006623.1| Homo sapiens genomic DNA, chromosome 11, clone:R... 40 2.9
29gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 2.9

>gb|AY857762.1| Triticum monococcum peroxidase 8 (POX8) mRNA, complete cds
          Length = 1282

 Score =  258 bits (130), Expect = 7e-66
 Identities = 142/146 (97%)
 Strand = Plus / Plus

                                                                       
Query: 82  ccatggcgagcagcggcagcctggccggtctggcggtgctgctcaccgccgtgctgtgcc 141
           ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  ccatggcgagcagcggcgggctggccggtctggcggtgctgctcaccgccgtgctgtgcc 122

                                                                       
Query: 142 tgcagctgccggtccacagccgcgcccagctgcgcgtcgggttctacaacaccacctgcc 201
           ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 123 tgcagctgccggtccacagccgcgcgcagctgcgcgtggggttctacaacaccacctgcc 182

                                     
Query: 202 ccaacgccgaggccatcgtccggcag 227
           ||||||||||||||||||||||||||
Sbjct: 183 ccaacgccgaggccatcgtccggcag 208



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>ref|NM_183815.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1071

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                 
Query: 159 agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgag 212
           ||||||| ||||||||  || |||||||||||||||| ||||||||| ||||||
Sbjct: 73  agccgcggccagctgcaggtggggttctacaacaccagctgccccaatgccgag 126



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                      
Query: 159      agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgag 212
                ||||||| ||||||||  || |||||||||||||||| ||||||||| ||||||
Sbjct: 12534345 agccgcggccagctgcaggtggggttctacaacaccagctgccccaatgccgag 12534398



 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                  
Query: 174      cgcgtcgggttctacaacaccacctgccccaacgccgaggccatcgtccg 223
                ||||||||||||||| | | || ||||||||||||||||||  |||||||
Sbjct: 12482977 cgcgtcgggttctaccagagcagctgccccaacgccgaggcgctcgtccg 12483026



 Score = 50.1 bits (25), Expect = 0.003
 Identities = 58/69 (84%)
 Strand = Plus / Plus

                                                                            
Query: 159      agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggccatc 218
                ||||| || |||||||  || |||||||||||||| | |||||||| |||||||||  | 
Sbjct: 12547310 agccgggcgcagctgcaggtggggttctacaacacgagctgccccaccgccgaggcgctg 12547369

                         
Query: 219      gtccggcag 227
                |||||||||
Sbjct: 12547370 gtccggcag 12547378



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>dbj|AP002971.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0537A05
          Length = 152396

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                   
Query: 159   agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgag 212
             ||||||| ||||||||  || |||||||||||||||| ||||||||| ||||||
Sbjct: 45955 agccgcggccagctgcaggtggggttctacaacaccagctgccccaatgccgag 46008



 Score = 50.1 bits (25), Expect = 0.003
 Identities = 58/69 (84%)
 Strand = Plus / Plus

                                                                         
Query: 159   agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggccatc 218
             ||||| || |||||||  || |||||||||||||| | |||||||| |||||||||  | 
Sbjct: 58920 agccgggcgcagctgcaggtggggttctacaacacgagctgccccaccgccgaggcgctg 58979

                      
Query: 219   gtccggcag 227
             |||||||||
Sbjct: 58980 gtccggcag 58988



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>dbj|AP004358.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1135C02
          Length = 152306

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                    
Query: 159    agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgag 212
              ||||||| ||||||||  || |||||||||||||||| ||||||||| ||||||
Sbjct: 119960 agccgcggccagctgcaggtggggttctacaacaccagctgccccaatgccgag 120013



 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                               
Query: 174   cgcgtcgggttctacaacaccacctgccccaacgccgaggccatcgtccg 223
             ||||||||||||||| | | || ||||||||||||||||||  |||||||
Sbjct: 68592 cgcgtcgggttctaccagagcagctgccccaacgccgaggcgctcgtccg 68641



 Score = 50.1 bits (25), Expect = 0.003
 Identities = 58/69 (84%)
 Strand = Plus / Plus

                                                                          
Query: 159    agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggccatc 218
              ||||| || |||||||  || |||||||||||||| | |||||||| |||||||||  | 
Sbjct: 132925 agccgggcgcagctgcaggtggggttctacaacacgagctgccccaccgccgaggcgctg 132984

                       
Query: 219    gtccggcag 227
              |||||||||
Sbjct: 132985 gtccggcag 132993



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>dbj|AK121616.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044C11, full
           insert sequence
          Length = 5938

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                 
Query: 159 agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgag 212
           ||||||| ||||||||  || |||||||||||||||| ||||||||| ||||||
Sbjct: 135 agccgcggccagctgcaggtggggttctacaacaccagctgccccaatgccgag 188



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>tpe|BN000543.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx14 gene for
           class III peroxidase 14 precursor, exons 1-3
          Length = 5620

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                 
Query: 159 agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgag 212
           ||||||| ||||||||  || |||||||||||||||| ||||||||| ||||||
Sbjct: 73  agccgcggccagctgcaggtggggttctacaacaccagctgccccaatgccgag 126



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>emb|AJ401274.1|ZMA401274 Zea mays mRNA for peroxidase (pox1 gene)
          Length = 1398

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                    
Query: 183 ttctacaacaccacctgccccaacgccgaggccatcgtccg 223
           |||||| |||||| ||||||||||||||||||| |||||||
Sbjct: 168 ttctacgacaccagctgccccaacgccgaggccctcgtccg 208



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>ref|NM_183810.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1041

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                             
Query: 174 cgcgtcgggttctacaacaccacctgccccaacgccgaggccatcgtccg 223
           ||||||||||||||| | | || ||||||||||||||||||  |||||||
Sbjct: 70  cgcgtcgggttctaccagagcagctgccccaacgccgaggcgctcgtccg 119



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>dbj|AK068894.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001H23, full
           insert sequence
          Length = 1382

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                             
Query: 174 cgcgtcgggttctacaacaccacctgccccaacgccgaggccatcgtccg 223
           ||||||||||||||| | | || ||||||||||||||||||  |||||||
Sbjct: 177 cgcgtcgggttctaccagagcagctgccccaacgccgaggcgctcgtccg 226



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>tpe|BN000541.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx12 gene for
           class III peroxidase 12 precursor, exons 1-3
          Length = 3928

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                             
Query: 174 cgcgtcgggttctacaacaccacctgccccaacgccgaggccatcgtccg 223
           ||||||||||||||| | | || ||||||||||||||||||  |||||||
Sbjct: 70  cgcgtcgggttctaccagagcagctgccccaacgccgaggcgctcgtccg 119



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>ref|NM_183816.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1062

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 58/69 (84%)
 Strand = Plus / Plus

                                                                       
Query: 159 agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggccatc 218
           ||||| || |||||||  || |||||||||||||| | |||||||| |||||||||  | 
Sbjct: 76  agccgggcgcagctgcaggtggggttctacaacacgagctgccccaccgccgaggcgctg 135

                    
Query: 219 gtccggcag 227
           |||||||||
Sbjct: 136 gtccggcag 144



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>dbj|AK099187.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023107P11, full
           insert sequence
          Length = 1271

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 58/69 (84%)
 Strand = Plus / Plus

                                                                       
Query: 159 agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggccatc 218
           ||||| || |||||||  || |||||||||||||| | |||||||| |||||||||  | 
Sbjct: 146 agccgggcgcagctgcaggtggggttctacaacacgagctgccccaccgccgaggcgctg 205

                    
Query: 219 gtccggcag 227
           |||||||||
Sbjct: 206 gtccggcag 214



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>dbj|AK070715.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023058L02, full
           insert sequence
          Length = 1492

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 58/69 (84%)
 Strand = Plus / Plus

                                                                       
Query: 159 agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggccatc 218
           ||||| || |||||||  || |||||||||||||| | |||||||| |||||||||  | 
Sbjct: 151 agccgggcgcagctgcaggtggggttctacaacacgagctgccccaccgccgaggcgctg 210

                    
Query: 219 gtccggcag 227
           |||||||||
Sbjct: 211 gtccggcag 219



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>tpe|BN000544.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx15 gene for
           class III peroxidase 15 precursor, exons 1-3
          Length = 5322

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 58/69 (84%)
 Strand = Plus / Plus

                                                                       
Query: 159 agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggccatc 218
           ||||| || |||||||  || |||||||||||||| | |||||||| |||||||||  | 
Sbjct: 76  agccgggcgcagctgcaggtggggttctacaacacgagctgccccaccgccgaggcgctg 135

                    
Query: 219 gtccggcag 227
           |||||||||
Sbjct: 136 gtccggcag 144



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>dbj|AK060115.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-E07, full
           insert sequence
          Length = 1008

 Score = 48.1 bits (24), Expect = 0.012
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                   
Query: 159 agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggc 214
           ||||| || |||||||  || |||||||||||||| | |||||||| |||||||||
Sbjct: 149 agccgggcgcagctgcaggtggggttctacaacacgagctgccccaccgccgaggc 204



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>gb|BC056999.1| Mus musculus neuropathy target esterase, mRNA (cDNA clone MGC:66981
           IMAGE:6831507), complete cds
          Length = 4461

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 112 tggcggtgctgctcaccgccgtgct 136
           ||||||||||| |||||||||||||
Sbjct: 289 tggcggtgctggtcaccgccgtgct 313



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>gb|BC054789.1| Mus musculus neuropathy target esterase, mRNA (cDNA clone MGC:65634
           IMAGE:6831507), complete cds
          Length = 4461

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 112 tggcggtgctgctcaccgccgtgct 136
           ||||||||||| |||||||||||||
Sbjct: 289 tggcggtgctggtcaccgccgtgct 313



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>dbj|AK162641.1| Mus musculus adult male bone cDNA, RIKEN full-length enriched
           library, clone:9830134O04 product:neuropathy target
           esterase, full insert sequence
          Length = 3840

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 112 tggcggtgctgctcaccgccgtgct 136
           ||||||||||| |||||||||||||
Sbjct: 244 tggcggtgctggtcaccgccgtgct 268



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>dbj|AK040720.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length
           enriched library, clone:A530020D05 product:neuropathy
           target esterase, full insert sequence
          Length = 2892

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 112 tggcggtgctgctcaccgccgtgct 136
           ||||||||||| |||||||||||||
Sbjct: 325 tggcggtgctggtcaccgccgtgct 349



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>dbj|AK089095.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
           full-length enriched library, clone:E430039F18
           product:neuropathy target esterase, full insert sequence
          Length = 4265

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 112 tggcggtgctgctcaccgccgtgct 136
           ||||||||||| |||||||||||||
Sbjct: 232 tggcggtgctggtcaccgccgtgct 256



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>gb|AF173829.1|AF173829 Mus musculus neuropathy target esterase homolog mRNA, complete cds
          Length = 4459

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 112 tggcggtgctgctcaccgccgtgct 136
           ||||||||||| |||||||||||||
Sbjct: 271 tggcggtgctggtcaccgccgtgct 295



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>ref|NM_015801.1| Mus musculus neuropathy target esterase (Nte), mRNA
          Length = 4459

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 112 tggcggtgctgctcaccgccgtgct 136
           ||||||||||| |||||||||||||
Sbjct: 271 tggcggtgctggtcaccgccgtgct 295



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>gb|AC170806.2| Mus musculus BAC clone RP24-363P6 from chromosome 8, complete sequence
          Length = 182564

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 112   tggcggtgctgctcaccgccgtgct 136
             ||||||||||| |||||||||||||
Sbjct: 43546 tggcggtgctggtcaccgccgtgct 43570



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>gb|AY816748.1| Synthetic construct clone pcNiV-Fopt C-terminal-Au1-tagged F protein
            gene, complete cds
          Length = 1659

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 187  acaacaccacctgccccaacgccg 210
            |||||||||||||||||| |||||
Sbjct: 1238 acaacaccacctgccccaccgccg 1261



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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 101    cctggccggtctggcggtgctgct 124
              ||||||||||||||| ||||||||
Sbjct: 952400 cctggccggtctggccgtgctgct 952377



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>gb|AC132936.9| Homo sapiens chromosome 11, clone RP13-569C6, complete sequence
          Length = 178778

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 133   tgctgtgcctgcagctgccggtcc 156
             ||||||||||||||||||| ||||
Sbjct: 65419 tgctgtgcctgcagctgcccgtcc 65442



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>dbj|AP006623.1| Homo sapiens genomic DNA, chromosome 11, clone:RP11-1391J07, complete
             sequence
          Length = 121103

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 133   tgctgtgcctgcagctgccggtcc 156
             ||||||||||||||||||| ||||
Sbjct: 54446 tgctgtgcctgcagctgcccgtcc 54423



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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 94      gcggcagcctggccggtctg 113
               ||||||||||||||||||||
Sbjct: 4650072 gcggcagcctggccggtctg 4650053


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,558,458
Number of Sequences: 3902068
Number of extensions: 1558458
Number of successful extensions: 122138
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 121497
Number of HSP's gapped (non-prelim): 641
length of query: 227
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 205
effective length of database: 17,147,199,772
effective search space: 3515175953260
effective search space used: 3515175953260
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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