ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast76g11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AJ438325.1|TAE438325 Triticum aestivum partial mRNA for gluc... 46 0.014
2emb|AJ438324.1|TAE438324 Triticum aestivum partial mRNA for gluc... 46 0.014
3ref|NM_130152.2| Arabidopsis thaliana unknown protein AT2G45890 ... 42 0.21
4gb|AC004665.3| Arabidopsis thaliana chromosome 2 clone F4I18 map... 42 0.21
5gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 0.84
6gb|AY960753.1| Arabidopsis halleri subsp. gemmifera Zrt- and Irt... 38 3.3
7gb|AC161379.2| Mus musculus BAC clone RP23-207P12 from chromosom... 38 3.3
8gb|AF532115.1| Mus musculus strain 129/SvJ BAC clone citb553n23 ... 38 3.3
9gb|AF532112.1| Mus musculus strain 129/SvJ BAC clone citb20h22 f... 38 3.3
10gb|AC005960.1|AC005960 Mus musculus chromosome 17 BAC citb20h22 ... 38 3.3

>emb|AJ438325.1|TAE438325 Triticum aestivum partial mRNA for glucosyltransferase (GbssI
           gene), clone ugt3i3e
          Length = 612

 Score = 46.1 bits (23), Expect = 0.014
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 48  atggagacgaagaagcctcacgcggtg 74
           ||||||| |||||||||||||||||||
Sbjct: 597 atggagatgaagaagcctcacgcggtg 571



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>emb|AJ438324.1|TAE438324 Triticum aestivum partial mRNA for glucosyltransferase (GbssI
           gene), clone ugt3i3c
          Length = 612

 Score = 46.1 bits (23), Expect = 0.014
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 48  atggagacgaagaagcctcacgcggtg 74
           ||||||| |||||||||||||||||||
Sbjct: 597 atggagatgaagaagcctcacgcggtg 571



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>ref|NM_130152.2| Arabidopsis thaliana unknown protein AT2G45890 mRNA, complete cds
          Length = 1585

 Score = 42.1 bits (21), Expect = 0.21
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 42  acggagatggagacgaagaag 62
           |||||||||||||||||||||
Sbjct: 294 acggagatggagacgaagaag 314



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>gb|AC004665.3| Arabidopsis thaliana chromosome 2 clone F4I18 map CIC02E07, complete
             sequence
          Length = 101647

 Score = 42.1 bits (21), Expect = 0.21
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 42    acggagatggagacgaagaag 62
             |||||||||||||||||||||
Sbjct: 43151 acggagatggagacgaagaag 43131



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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 0.84
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 39      acgacggagatggagacgaa 58
               ||||||||||||||||||||
Sbjct: 2481699 acgacggagatggagacgaa 2481680



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>gb|AY960753.1| Arabidopsis halleri subsp. gemmifera Zrt- and Irt-related protein
          3 (ZIP3) mRNA, partial cds
          Length = 960

 Score = 38.2 bits (19), Expect = 3.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 44 ggagatggagacgaagaag 62
          |||||||||||||||||||
Sbjct: 25 ggagatggagacgaagaag 7



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>gb|AC161379.2| Mus musculus BAC clone RP23-207P12 from chromosome 17, complete
             sequence
          Length = 189293

 Score = 38.2 bits (19), Expect = 3.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 44    ggagatggagacgaagaag 62
             |||||||||||||||||||
Sbjct: 40514 ggagatggagacgaagaag 40532



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>gb|AF532115.1| Mus musculus strain 129/SvJ BAC clone citb553n23 from the MHC region,
              complete sequence
          Length = 161729

 Score = 38.2 bits (19), Expect = 3.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 38     gacgacggagatggagacg 56
              |||||||||||||||||||
Sbjct: 157017 gacgacggagatggagacg 156999



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>gb|AF532112.1| Mus musculus strain 129/SvJ BAC clone citb20h22 from the MHC region,
             complete sequence
          Length = 172199

 Score = 38.2 bits (19), Expect = 3.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 38    gacgacggagatggagacg 56
             |||||||||||||||||||
Sbjct: 84325 gacgacggagatggagacg 84307



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>gb|AC005960.1|AC005960 Mus musculus chromosome 17 BAC citb20h22 from the MHC region, complete
             sequence
          Length = 158414

 Score = 38.2 bits (19), Expect = 3.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 38    gacgacggagatggagacg 56
             |||||||||||||||||||
Sbjct: 84307 gacgacggagatggagacg 84289


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 396,505
Number of Sequences: 3902068
Number of extensions: 396505
Number of successful extensions: 24478
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24456
Number of HSP's gapped (non-prelim): 22
length of query: 80
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 59
effective length of database: 17,151,101,840
effective search space: 1011915008560
effective search space used: 1011915008560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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