| Clone Name | bast76g11 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ438325.1|TAE438325 Triticum aestivum partial mRNA for glucosyltransferase (GbssI gene), clone ugt3i3e Length = 612 Score = 46.1 bits (23), Expect = 0.014 Identities = 26/27 (96%) Strand = Plus / Minus Query: 48 atggagacgaagaagcctcacgcggtg 74 ||||||| ||||||||||||||||||| Sbjct: 597 atggagatgaagaagcctcacgcggtg 571
>emb|AJ438324.1|TAE438324 Triticum aestivum partial mRNA for glucosyltransferase (GbssI gene), clone ugt3i3c Length = 612 Score = 46.1 bits (23), Expect = 0.014 Identities = 26/27 (96%) Strand = Plus / Minus Query: 48 atggagacgaagaagcctcacgcggtg 74 ||||||| ||||||||||||||||||| Sbjct: 597 atggagatgaagaagcctcacgcggtg 571
>ref|NM_130152.2| Arabidopsis thaliana unknown protein AT2G45890 mRNA, complete cds Length = 1585 Score = 42.1 bits (21), Expect = 0.21 Identities = 21/21 (100%) Strand = Plus / Plus Query: 42 acggagatggagacgaagaag 62 ||||||||||||||||||||| Sbjct: 294 acggagatggagacgaagaag 314
>gb|AC004665.3| Arabidopsis thaliana chromosome 2 clone F4I18 map CIC02E07, complete sequence Length = 101647 Score = 42.1 bits (21), Expect = 0.21 Identities = 21/21 (100%) Strand = Plus / Minus Query: 42 acggagatggagacgaagaag 62 ||||||||||||||||||||| Sbjct: 43151 acggagatggagacgaagaag 43131
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 0.84 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 acgacggagatggagacgaa 58 |||||||||||||||||||| Sbjct: 2481699 acgacggagatggagacgaa 2481680
>gb|AY960753.1| Arabidopsis halleri subsp. gemmifera Zrt- and Irt-related protein 3 (ZIP3) mRNA, partial cds Length = 960 Score = 38.2 bits (19), Expect = 3.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 44 ggagatggagacgaagaag 62 ||||||||||||||||||| Sbjct: 25 ggagatggagacgaagaag 7
>gb|AC161379.2| Mus musculus BAC clone RP23-207P12 from chromosome 17, complete sequence Length = 189293 Score = 38.2 bits (19), Expect = 3.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 44 ggagatggagacgaagaag 62 ||||||||||||||||||| Sbjct: 40514 ggagatggagacgaagaag 40532
>gb|AF532115.1| Mus musculus strain 129/SvJ BAC clone citb553n23 from the MHC region, complete sequence Length = 161729 Score = 38.2 bits (19), Expect = 3.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 38 gacgacggagatggagacg 56 ||||||||||||||||||| Sbjct: 157017 gacgacggagatggagacg 156999
>gb|AF532112.1| Mus musculus strain 129/SvJ BAC clone citb20h22 from the MHC region, complete sequence Length = 172199 Score = 38.2 bits (19), Expect = 3.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 38 gacgacggagatggagacg 56 ||||||||||||||||||| Sbjct: 84325 gacgacggagatggagacg 84307
>gb|AC005960.1|AC005960 Mus musculus chromosome 17 BAC citb20h22 from the MHC region, complete sequence Length = 158414 Score = 38.2 bits (19), Expect = 3.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 38 gacgacggagatggagacg 56 ||||||||||||||||||| Sbjct: 84307 gacgacggagatggagacg 84289 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 396,505 Number of Sequences: 3902068 Number of extensions: 396505 Number of successful extensions: 24478 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 24456 Number of HSP's gapped (non-prelim): 22 length of query: 80 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 59 effective length of database: 17,151,101,840 effective search space: 1011915008560 effective search space used: 1011915008560 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)