ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bast76g08 |
|---|---|
| Clone Library Name | barley_pub |
>PGLR_AGRTU (P27644) Polygalacturonase (EC 3.2.1.15) (Pectinase) (PGL)| Length = 312 Score = 44.3 bits (103), Expect = 9e-05 Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 1/74 (1%) Frame = +1 Query: 1 CIAVKSGW-DEYGIRFNMPSQHIVVRRLTCISPTSAMIALGSEMSGGIQDVRVEDNIAIN 177 CIAVK+G G ++ + R + P + +GSEMSGG+ DV VED I Sbjct: 96 CIAVKAGKRGPDGEDDHLAETRGITVRHCLMQPGHGGLVIGSEMSGGVHDVTVEDCDMIG 155 Query: 178 TESAVRIKSGVGRG 219 T+ +R+K+G G Sbjct: 156 TDRGLRLKTGARSG 169
>DCLO_SELRU (O50657) Lysine/ornithine decarboxylase (EC 4.1.1.18) (EC 4.1.1.17)| (LDC) Length = 393 Score = 37.0 bits (84), Expect = 0.014 Identities = 21/60 (35%), Positives = 34/60 (56%) Frame = -3 Query: 183 LGVDGNVVLHAHVLDAARHLTAEGDHGARRGDAGEPPDDDVLARHVEPDAVLVPAALHRD 4 LGVDG+ +++A+ + AR L A D+ RR +P + D +A+ V VLV A+ + Sbjct: 83 LGVDGSQMIYANPVKDARGLKAAADYNVRRFTFDDPSEIDKMAKAVPGADVLVRIAVRNN 142
>HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor| Length = 351 Score = 32.7 bits (73), Expect = 0.26 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Frame = +3 Query: 36 HPVQHAEPAHRRQEAHLHLPDERHDRPRQ*DVWRHPGRARGGQH---CHQHRVGRQN 197 HP +H EP H +E H H P+E H+ + HP H H H +G + Sbjct: 65 HPEEHHEPHH--EEHHHHHPEEHHEPHHEEHHHHHPHPHHHHHHHPPHHHHHLGHHH 119
>IF2_STRAG (P0A3K7) Translation initiation factor IF-2| Length = 927 Score = 30.4 bits (67), Expect = 1.3 Identities = 18/54 (33%), Positives = 27/54 (50%) Frame = +3 Query: 60 AHRRQEAHLHLPDERHDRPRQ*DVWRHPGRARGGQHCHQHRVGRQNQVRCGEGR 221 A +RQ H + RH+ R D RH G+ R + + +R G+QN +GR Sbjct: 113 AEKRQHNGDHRKNNRHNDTRS-DDRRHQGQKRSNGNRNDNRQGQQNNRNKNDGR 165
>IF2_STRA5 (Q8E1H3) Translation initiation factor IF-2| Length = 927 Score = 30.4 bits (67), Expect = 1.3 Identities = 18/54 (33%), Positives = 27/54 (50%) Frame = +3 Query: 60 AHRRQEAHLHLPDERHDRPRQ*DVWRHPGRARGGQHCHQHRVGRQNQVRCGEGR 221 A +RQ H + RH+ R D RH G+ R + + +R G+QN +GR Sbjct: 113 AEKRQHNGDHRKNNRHNDTRS-DDRRHQGQKRSNGNRNDNRQGQQNNRNKNDGR 165
>IF2_STRA3 (P0A3K6) Translation initiation factor IF-2| Length = 927 Score = 30.4 bits (67), Expect = 1.3 Identities = 18/54 (33%), Positives = 27/54 (50%) Frame = +3 Query: 60 AHRRQEAHLHLPDERHDRPRQ*DVWRHPGRARGGQHCHQHRVGRQNQVRCGEGR 221 A +RQ H + RH+ R D RH G+ R + + +R G+QN +GR Sbjct: 113 AEKRQHNGDHRKNNRHNDTRS-DDRRHQGQKRSNGNRNDNRQGQQNNRNKNDGR 165
>IF2_STRA1 (Q3K302) Translation initiation factor IF-2| Length = 927 Score = 30.4 bits (67), Expect = 1.3 Identities = 18/54 (33%), Positives = 27/54 (50%) Frame = +3 Query: 60 AHRRQEAHLHLPDERHDRPRQ*DVWRHPGRARGGQHCHQHRVGRQNQVRCGEGR 221 A +RQ H + RH+ R D RH G+ R + + +R G+QN +GR Sbjct: 113 AEKRQHNGDHRKNNRHNDTRS-DDRRHQGQKRSNGNRNDNRQGQQNNRNKNDGR 165
>TRPV5_HUMAN (Q9NQA5) Transient receptor potential cation channel subfamily V| member 5 (TrpV5) (osm-9-like TRP channel 3) (OTRPC3) (Epithelial calcium channel 1) (ECaC) (ECaC1) (Calcium transport protein 2) (CaT2) Length = 729 Score = 29.3 bits (64), Expect = 2.9 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = -3 Query: 216 PPHTGLDSDGRLGVDGNVVLHAHVLDAARHL 124 P H GL GV+GN V+ H++ RH+ Sbjct: 236 PNHQGLTPFKLAGVEGNTVMFQHLMQKRRHI 266
>USP9Y_HUMAN (O00507) Probable ubiquitin carboxyl-terminal hydrolase FAF-Y (EC| 3.1.2.15) (Ubiquitin thioesterase FAF-Y) (Ubiquitin-specific-processing protease FAF-Y) (Deubiquitinating enzyme FAF-Y) (Fat facets protein-related, Y-linked) (Ubiquitin-specif Length = 2555 Score = 28.9 bits (63), Expect = 3.8 Identities = 14/41 (34%), Positives = 23/41 (56%) Frame = -1 Query: 218 PLPTPDLILTADSVLMAMLSSTRTSWMPPDISLPRAIMALV 96 P P+ + +L +S+L+A S S PDI + RAI ++ Sbjct: 1207 PNPSSECVLRNESILLAQEISNEASRYMPDICVIRAIQKII 1247
>RDRP_BDV (P52639) Large structural protein (L protein) (P180) [Includes:| RNA-directed RNA polymerase (EC 2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)] Length = 1711 Score = 28.9 bits (63), Expect = 3.8 Identities = 16/48 (33%), Positives = 25/48 (52%) Frame = -1 Query: 197 ILTADSVLMAMLSSTRTSWMPPDISLPRAIMALVGEMQVSLLTTMCWL 54 +L D VL+ M+SS + SW P+I + + +M+V L T L Sbjct: 276 LLQLDPVLLLMVSSVQKSWYFPEIRMVDGSREQLHKMRVELETPQALL 323
>CLIC6_RABIT (Q9N2G5) Chloride intracellular channel 6 (Parchorin)| Length = 637 Score = 28.5 bits (62), Expect = 4.9 Identities = 20/62 (32%), Positives = 27/62 (43%) Frame = -3 Query: 201 LDSDGRLGVDGNVVLHAHVLDAARHLTAEGDHGARRGDAGEPPDDDVLARHVEPDAVLVP 22 +D+ G + G+V DA + AEG G G GEP D + +AV V Sbjct: 224 VDAGGSIDAGGSV-------DAGGSMDAEGPAGGAHGAGGEPQDLGAGSPQPRSEAVEVA 276 Query: 21 AA 16 AA Sbjct: 277 AA 278
>ARI3A_MOUSE (Q62431) AT-rich interactive domain-containing protein 3A (ARID| domain-containing protein 3A) (Dead ringer-like protein 1) (B-cell regulator of IgH transcription) (Bright) Length = 601 Score = 28.5 bits (62), Expect = 4.9 Identities = 19/50 (38%), Positives = 23/50 (46%) Frame = -3 Query: 216 PPHTGLDSDGRLGVDGNVVLHAHVLDAARHLTAEGDHGARRGDAGEPPDD 67 PP +G + R G + LH VL+ A H AEGD D G DD Sbjct: 86 PPISGDEDTAREGTLSSPALHGSVLEGAGH--AEGDRHLM--DVGSDDDD 131
>VG13_BPML5 (Q05219) Gene 13 protein (Gp13)| Length = 593 Score = 28.5 bits (62), Expect = 4.9 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = -3 Query: 192 DGRLGVDGNVVLHAHVLDAARHLT 121 +G + DGN VL HVL+A RH T Sbjct: 521 EGEVWHDGNPVLRQHVLNAKRHPT 544
>PGLR1_RALSO (P58598) Polygalacturonase precursor (PGA) (EC 3.2.1.15)| (Pectinase) Length = 531 Score = 28.5 bits (62), Expect = 4.9 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 4/41 (9%) Frame = +1 Query: 109 IALGSEMSGGIQDVRVEDNIAINTESA----VRIKSGVGRG 219 +++GSE GG+ +++V D +S+ +RIKS + RG Sbjct: 335 LSIGSETDGGVSNMQVTDLAMDGNDSSGGNGLRIKSDISRG 375
>VG13_BPMD2 (O64206) Gene 13 protein (Gp13)| Length = 595 Score = 28.5 bits (62), Expect = 4.9 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = -3 Query: 192 DGRLGVDGNVVLHAHVLDAARHLT 121 +G + DGN VL HVL+A RH T Sbjct: 523 EGEVWHDGNPVLRQHVLNAKRHPT 546
>PGLR2_ASPTU (P19805) Polygalacturonase-2 precursor (EC 3.2.1.15)| (Polygalacturonase II) (PG-II) (Pectinase-2) Length = 362 Score = 28.1 bits (61), Expect = 6.4 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Frame = +1 Query: 1 CIAVKSGWDEYGIRFNMPSQHIVVRRLTCISPTSAMI-ALGSEMSGGIQDVRVEDNIAIN 177 C+A+ SG ++I TCI I ++G + +++V +E + N Sbjct: 203 CLAINSG------------ENIWFTSGTCIGGHGLSIGSVGGRSNNVVKNVTIEHSTVSN 250 Query: 178 TESAVRIKSGVG 213 +E+AVRIK+ G Sbjct: 251 SENAVRIKTVSG 262
>LRCH1_MOUSE (P62046) Leucine-rich repeats and calponin homology| domain-containing protein 1 (Calponin homology domain-containing protein 1) Length = 709 Score = 28.1 bits (61), Expect = 6.4 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 8/59 (13%) Frame = -3 Query: 159 LHAHVLDAARHLTAE--GDHGARRGDAGEPPDDDVLARH------VEPDAVLVPAALHR 7 LH HV D+ + + D+G +R A EP D+D ++ + VE D + A HR Sbjct: 300 LHQHVEDSKKDSDSGVGSDNGDKRLSATEPSDEDTVSLNAPMSNIVEEDQTIKEDACHR 358
>ZNUA_HAEIN (P44526) High-affinity zinc uptake system protein znuA precursor| Length = 337 Score = 28.1 bits (61), Expect = 6.4 Identities = 15/56 (26%), Positives = 20/56 (35%) Frame = +3 Query: 21 LGRVRHPVQHAEPAHRRQEAHLHLPDERHDRPRQ*DVWRHPGRARGGQHCHQHRVG 188 L + H H + H H H D +HD D +H + H H H G Sbjct: 111 LSKAHHEHFHEDGDHDHDHKHEHKHDHKHDHDHDHD-HKHEHKHDHEHHDHDHHEG 165
>RAVA_PHOLL (Q7NA81) ATPase ravA (EC 3.6.3.-) (Regulatory ATPase variant A)| Length = 503 Score = 27.7 bits (60), Expect = 8.4 Identities = 12/44 (27%), Positives = 24/44 (54%) Frame = +3 Query: 69 RQEAHLHLPDERHDRPRQ*DVWRHPGRARGGQHCHQHRVGRQNQ 200 R+ + L+LPD +H + + + W+ + HQH++ Q+Q Sbjct: 427 RRSSTLYLPDHQHQQNEENNEWQERLEKFNQEIHHQHQLFNQHQ 470
>LMO6_MOUSE (Q80VL3) LIM domain only protein 6 (Triple LIM domain protein 6)| Length = 624 Score = 27.7 bits (60), Expect = 8.4 Identities = 20/54 (37%), Positives = 20/54 (37%) Frame = +3 Query: 57 PAHRRQEAHLHLPDERHDRPRQ*DVWRHPGRARGGQHCHQHRVGRQNQVRCGEG 218 P R H H H R RQ RH R G H H H GR RC G Sbjct: 503 PPPRTPSCHHH---HHHRRRRQ----RH---RRRGSHHHHHHPGRHGHHRCDLG 546
>TRPV5_RABIT (Q9XSM3) Transient receptor potential cation channel subfamily V| member 5 (TrpV5) (osm-9-like TRP channel 3) (OTRPC3) (Epithelial calcium channel 1) (ECaC1) Length = 730 Score = 27.7 bits (60), Expect = 8.4 Identities = 11/31 (35%), Positives = 17/31 (54%) Frame = -3 Query: 216 PPHTGLDSDGRLGVDGNVVLHAHVLDAARHL 124 P H GL GV+GN V+ H++ +H+ Sbjct: 236 PNHQGLTPFKLAGVEGNTVMFQHLMQKRKHV 266
>PGLR2_ASPNG (P26214) Endopolygalacturonase-2 precursor (EC 3.2.1.15)| (Endopolygalacturonase II) (EPG-II) (PG-II) (Pectinase-2) Length = 362 Score = 27.7 bits (60), Expect = 8.4 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Frame = +1 Query: 1 CIAVKSGWDEYGIRFNMPSQHIVVRRLTCISPTSAMI-ALGSEMSGGIQDVRVEDNIAIN 177 C+AV SG ++I TCI I ++G + +++V +E + N Sbjct: 203 CLAVNSG------------ENIWFTGGTCIGGHGLSIGSVGDRSNNVVKNVTIEHSTVSN 250 Query: 178 TESAVRIKS 204 +E+AVRIK+ Sbjct: 251 SENAVRIKT 259
>PEHX_ERWCH (P15922) Exo-poly-alpha-D-galacturonosidase precursor (EC 3.2.1.82)| (Exo-PG) Length = 602 Score = 27.7 bits (60), Expect = 8.4 Identities = 13/37 (35%), Positives = 18/37 (48%) Frame = +1 Query: 109 IALGSEMSGGIQDVRVEDNIAINTESAVRIKSGVGRG 219 + LGS GI DV E+N+ + +R KS G Sbjct: 431 VVLGSHTGAGIVDVLAENNVITQNDVGLRAKSAPAIG 467 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,128,170 Number of Sequences: 219361 Number of extensions: 626891 Number of successful extensions: 2313 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2212 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2303 length of database: 80,573,946 effective HSP length: 49 effective length of database: 69,825,257 effective search space used: 1675806168 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
