ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast76g08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 272 4e-70
2gb|AC119747.1| Genomic sequence for Oryza sativa, Nipponbare str... 272 4e-70
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 272 4e-70
4dbj|AK070284.1| Oryza sativa (japonica cultivar-group) cDNA clon... 272 4e-70
5gb|AY111597.1| Zea mays CL1145_2 mRNA sequence 202 3e-49
6gb|AY107060.1| Zea mays PCO111763 mRNA sequence 188 5e-45
7ref|XM_550458.1| Oryza sativa (japonica cultivar-group), mRNA 62 8e-07
8dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 62 8e-07
9dbj|AP001129.1| Oryza sativa (japonica cultivar-group) genomic D... 62 8e-07
10dbj|AK122178.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 8e-07
11dbj|AK105911.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 8e-07
12dbj|AK105782.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 8e-07
13dbj|AK105650.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 8e-07
14dbj|AK073364.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 8e-07
15gb|AY109222.1| Zea mays PCO091475 mRNA sequence 56 5e-05
16dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 54 2e-04
17dbj|AP004801.3| Oryza sativa (japonica cultivar-group) genomic D... 54 2e-04
18dbj|AP006844.2| Oryza sativa (japonica cultivar-group) genomic D... 54 2e-04
19dbj|AK106194.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 2e-04
20dbj|AK061146.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 2e-04
21dbj|AK059595.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 2e-04
22ref|NM_123552.1| Arabidopsis thaliana polygalacturonase AT5G4187... 48 0.012
23gb|BT015129.1| Arabidopsis thaliana At5g41870 gene, complete cds 48 0.012
24emb|BX831722.1|CNS0A0Y2 Arabidopsis thaliana Full-length cDNA Co... 48 0.012
25emb|BX830657.1|CNS0A0RJ Arabidopsis thaliana Full-length cDNA Co... 48 0.012
26dbj|AB016871.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 48 0.012
27ref|NM_192821.1| Oryza sativa (japonica cultivar-group), predic... 44 0.18
28dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.18
29dbj|AP003328.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.18
30dbj|AK099329.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.18
31dbj|AK058453.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.18
32gb|AC102285.7| Mus musculus chromosome 19, clone RP24-329P13, co... 40 2.8
33ref|XM_543065.2| PREDICTED: Canis familiaris similar to Transcri... 40 2.8
34ref|XM_862309.1| PREDICTED: Canis familiaris similar to Transcri... 40 2.8
35gb|AC157912.4| Mus musculus chromosome 19, clone RP24-241F10, co... 40 2.8
36gb|AC124864.3| Homo sapiens BAC clone RP11-570J4 from 4, complet... 40 2.8
37gb|AC116622.6| Homo sapiens BAC clone RP11-312L16 from 4, comple... 40 2.8
38gb|AY107818.1| Zea mays PCO140658 mRNA sequence 40 2.8
39emb|AJ845083.2| Streptomyces tenjimariensis istamycin biosynthes... 40 2.8
40emb|AJ295704.1|MMU295704 Mus musculus partial Fas/ApoI gene, exo... 40 2.8 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  272 bits (137), Expect = 4e-70
 Identities = 194/213 (91%)
 Strand = Plus / Plus

                                                                           
Query: 1       tgcatcgcggtgaagagcggctgggacgagtacggcatccggttcaacatgccgagccag 60
               |||||||| |||||||||||||||||| |||||||||||  |||||||||||||||||||
Sbjct: 1412641 tgcatcgccgtgaagagcggctgggaccagtacggcatcaagttcaacatgccgagccag 1412700

                                                                           
Query: 61      cacatcgtcgtcaggaggctcacctgcatctccccgacgagcgccatgatcgccctcggc 120
               |||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1412701 cacatcctcatcaggaggctcacctgcatctccccgacgagcgccatgatcgcgctcggc 1412760

                                                                           
Query: 121     agtgagatgtctggcggcatccaggacgtgcgcgtggaggacaacattgccatcaacacc 180
               || |||||||| ||||||||||  ||||||||||  | ||||||| | |||||| |||||
Sbjct: 1412761 agcgagatgtccggcggcatccgcgacgtgcgcgccgtggacaacgtcgccatcgacacc 1412820

                                                
Query: 181     gagtcggccgtcagaatcaagtccggtgtgggg 213
               |||||||||||||| ||||||||||| ||||||
Sbjct: 1412821 gagtcggccgtcaggatcaagtccggcgtgggg 1412853
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>gb|AC119747.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1293G11,
             from chromosome 3, complete sequence
          Length = 147806

 Score =  272 bits (137), Expect = 4e-70
 Identities = 194/213 (91%)
 Strand = Plus / Plus

                                                                         
Query: 1     tgcatcgcggtgaagagcggctgggacgagtacggcatccggttcaacatgccgagccag 60
             |||||||| |||||||||||||||||| |||||||||||  |||||||||||||||||||
Sbjct: 74144 tgcatcgccgtgaagagcggctgggaccagtacggcatcaagttcaacatgccgagccag 74203

                                                                         
Query: 61    cacatcgtcgtcaggaggctcacctgcatctccccgacgagcgccatgatcgccctcggc 120
             |||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 74204 cacatcctcatcaggaggctcacctgcatctccccgacgagcgccatgatcgcgctcggc 74263

                                                                         
Query: 121   agtgagatgtctggcggcatccaggacgtgcgcgtggaggacaacattgccatcaacacc 180
             || |||||||| ||||||||||  ||||||||||  | ||||||| | |||||| |||||
Sbjct: 74264 agcgagatgtccggcggcatccgcgacgtgcgcgccgtggacaacgtcgccatcgacacc 74323

                                              
Query: 181   gagtcggccgtcagaatcaagtccggtgtgggg 213
             |||||||||||||| ||||||||||| ||||||
Sbjct: 74324 gagtcggccgtcaggatcaagtccggcgtgggg 74356
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  272 bits (137), Expect = 4e-70
 Identities = 194/213 (91%)
 Strand = Plus / Plus

                                                                           
Query: 1       tgcatcgcggtgaagagcggctgggacgagtacggcatccggttcaacatgccgagccag 60
               |||||||| |||||||||||||||||| |||||||||||  |||||||||||||||||||
Sbjct: 1412639 tgcatcgccgtgaagagcggctgggaccagtacggcatcaagttcaacatgccgagccag 1412698

                                                                           
Query: 61      cacatcgtcgtcaggaggctcacctgcatctccccgacgagcgccatgatcgccctcggc 120
               |||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1412699 cacatcctcatcaggaggctcacctgcatctccccgacgagcgccatgatcgcgctcggc 1412758

                                                                           
Query: 121     agtgagatgtctggcggcatccaggacgtgcgcgtggaggacaacattgccatcaacacc 180
               || |||||||| ||||||||||  ||||||||||  | ||||||| | |||||| |||||
Sbjct: 1412759 agcgagatgtccggcggcatccgcgacgtgcgcgccgtggacaacgtcgccatcgacacc 1412818

                                                
Query: 181     gagtcggccgtcagaatcaagtccggtgtgggg 213
               |||||||||||||| ||||||||||| ||||||
Sbjct: 1412819 gagtcggccgtcaggatcaagtccggcgtgggg 1412851
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>dbj|AK070284.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023048L01, full
            insert sequence
          Length = 1579

 Score =  272 bits (137), Expect = 4e-70
 Identities = 194/213 (91%)
 Strand = Plus / Plus

                                                                        
Query: 1    tgcatcgcggtgaagagcggctgggacgagtacggcatccggttcaacatgccgagccag 60
            |||||||| |||||||||||||||||| |||||||||||  |||||||||||||||||||
Sbjct: 805  tgcatcgccgtgaagagcggctgggaccagtacggcatcaagttcaacatgccgagccag 864

                                                                        
Query: 61   cacatcgtcgtcaggaggctcacctgcatctccccgacgagcgccatgatcgccctcggc 120
            |||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 865  cacatcctcatcaggaggctcacctgcatctccccgacgagcgccatgatcgcgctcggc 924

                                                                        
Query: 121  agtgagatgtctggcggcatccaggacgtgcgcgtggaggacaacattgccatcaacacc 180
            || |||||||| ||||||||||  ||||||||||  | ||||||| | |||||| |||||
Sbjct: 925  agcgagatgtccggcggcatccgcgacgtgcgcgccgtggacaacgtcgccatcgacacc 984

                                             
Query: 181  gagtcggccgtcagaatcaagtccggtgtgggg 213
            |||||||||||||| ||||||||||| ||||||
Sbjct: 985  gagtcggccgtcaggatcaagtccggcgtgggg 1017
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>gb|AY111597.1| Zea mays CL1145_2 mRNA sequence
          Length = 988

 Score =  202 bits (102), Expect = 3e-49
 Identities = 172/197 (87%)
 Strand = Plus / Plus

                                                                       
Query: 10  gtgaagagcggctgggacgagtacggcatccggttcaacatgccgagccagcacatcgtc 69
           ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 192 gtgaagagcgggtgggacgagtacggcatcaggttcaacatgccgagccagcacatcgtc 251

                                                                       
Query: 70  gtcaggaggctcacctgcatctccccgacgagcgccatgatcgccctcggcagtgagatg 129
            || ||||||| |||||| |||     ||||||||||||||||| || ||||| ||||||
Sbjct: 252 atccggaggctgacctgcgtctnnnnnacgagcgccatgatcgcgctgggcagcgagatg 311

                                                                       
Query: 130 tctggcggcatccaggacgtgcgcgtggaggacaacattgccatcaacaccgagtcggcc 189
           || ||||||||||  ||||||||||  ||||||| | | ||||||||||| |||||||||
Sbjct: 312 tccggcggcatccgcgacgtgcgcgccgaggacagcgtcgccatcaacacggagtcggcc 371

                            
Query: 190 gtcagaatcaagtccgg 206
           |||||  ||||||||||
Sbjct: 372 gtcagggtcaagtccgg 388
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>gb|AY107060.1| Zea mays PCO111763 mRNA sequence
          Length = 812

 Score =  188 bits (95), Expect = 5e-45
 Identities = 170/195 (87%)
 Strand = Plus / Plus

                                                                       
Query: 27  cgagtacggcatccggttcaacatgccgagccagcacatcgtcgtcaggaggctcacctg 86
           ||||||||||||| ||||||||||||| ||||||||||||||| || ||||||| |||||
Sbjct: 12  cgagtacggcatcaggttcaacatgccaagccagcacatcgtcatccggaggctgacctg 71

                                                                       
Query: 87  catctccccgacgagcgccatgatcgccctcggcagtgagatgtctggcggcatccagga 146
           | ||||||| ||||||||||||||||| || ||||| |||||||| ||||| ||||  ||
Sbjct: 72  cgtctcccccacgagcgccatgatcgcgctgggcagcgagatgtccggcggtatccgtga 131

                                                                       
Query: 147 cgtgcgcgtggaggacaacattgccatcaacaccgagtcggccgtcagaatcaagtccgg 206
           ||||||||  ||||||| | | ||||||||||| ||||||||||||||  ||||||||||
Sbjct: 132 cgtgcgcgccgaggacagcgtcgccatcaacacggagtcggccgtcagggtcaagtccgg 191

                          
Query: 207 tgtggggaggggcgg 221
            |  |||||||||||
Sbjct: 192 cgccgggaggggcgg 206
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>ref|XM_550458.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1640

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 94/115 (81%)
 Strand = Plus / Plus

                                                                        
Query: 49   atgccgagccagcacatcgtcgtcaggaggctcacctgcatctccccgacgagcgccatg 108
            ||||| |||||||||||||| ||  ||||||| || ||| | || |||||||||||  ||
Sbjct: 917  atgcccagccagcacatcgtggtgcggaggctgacgtgcgtgtcgccgacgagcgcggtg 976

                                                                   
Query: 109  atcgccctcggcagtgagatgtctggcggcatccaggacgtgcgcgtggaggaca 163
            ||||| || ||||| |||||||| ||||| |||   |||||||| | ||||||||
Sbjct: 977  atcgcgctgggcagcgagatgtcgggcgggatcagcgacgtgcgggcggaggaca 1031
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              complete sequence
          Length = 30731886

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 94/115 (81%)
 Strand = Plus / Minus

                                                                          
Query: 49     atgccgagccagcacatcgtcgtcaggaggctcacctgcatctccccgacgagcgccatg 108
              ||||| |||||||||||||| ||  ||||||| || ||| | || |||||||||||  ||
Sbjct: 438899 atgcccagccagcacatcgtggtgcggaggctgacgtgcgtgtcgccgacgagcgcggtg 438840

                                                                     
Query: 109    atcgccctcggcagtgagatgtctggcggcatccaggacgtgcgcgtggaggaca 163
              ||||| || ||||| |||||||| ||||| |||   |||||||| | ||||||||
Sbjct: 438839 atcgcgctgggcagcgagatgtcgggcgggatcagcgacgtgcgggcggaggaca 438785
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>dbj|AP001129.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0644B06
          Length = 194509

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 94/115 (81%)
 Strand = Plus / Minus

                                                                          
Query: 49     atgccgagccagcacatcgtcgtcaggaggctcacctgcatctccccgacgagcgccatg 108
              ||||| |||||||||||||| ||  ||||||| || ||| | || |||||||||||  ||
Sbjct: 148852 atgcccagccagcacatcgtggtgcggaggctgacgtgcgtgtcgccgacgagcgcggtg 148793

                                                                     
Query: 109    atcgccctcggcagtgagatgtctggcggcatccaggacgtgcgcgtggaggaca 163
              ||||| || ||||| |||||||| ||||| |||   |||||||| | ||||||||
Sbjct: 148792 atcgcgctgggcagcgagatgtcgggcgggatcagcgacgtgcgggcggaggaca 148738
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>dbj|AK122178.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148N22, full
            insert sequence
          Length = 1845

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 94/115 (81%)
 Strand = Plus / Plus

                                                                        
Query: 49   atgccgagccagcacatcgtcgtcaggaggctcacctgcatctccccgacgagcgccatg 108
            ||||| |||||||||||||| ||  ||||||| || ||| | || |||||||||||  ||
Sbjct: 1011 atgcccagccagcacatcgtggtgcggaggctgacgtgcgtgtcgccgacgagcgcggtg 1070

                                                                   
Query: 109  atcgccctcggcagtgagatgtctggcggcatccaggacgtgcgcgtggaggaca 163
            ||||| || ||||| |||||||| ||||| |||   |||||||| | ||||||||
Sbjct: 1071 atcgcgctgggcagcgagatgtcgggcgggatcagcgacgtgcgggcggaggaca 1125
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>dbj|AK105911.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-G11, full
            insert sequence
          Length = 1755

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 94/115 (81%)
 Strand = Plus / Plus

                                                                        
Query: 49   atgccgagccagcacatcgtcgtcaggaggctcacctgcatctccccgacgagcgccatg 108
            ||||| |||||||||||||| ||  ||||||| || ||| | || |||||||||||  ||
Sbjct: 917  atgcccagccagcacatcgtggtgcggaggctgacgtgcgtgtcgccgacgagcgcggtg 976

                                                                   
Query: 109  atcgccctcggcagtgagatgtctggcggcatccaggacgtgcgcgtggaggaca 163
            ||||| || ||||| |||||||| ||||| |||   |||||||| | ||||||||
Sbjct: 977  atcgcgctgggcagcgagatgtcgggcgggatcagcgacgtgcgggcggaggaca 1031
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>dbj|AK105782.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-G05, full
            insert sequence
          Length = 1640

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 94/115 (81%)
 Strand = Plus / Plus

                                                                        
Query: 49   atgccgagccagcacatcgtcgtcaggaggctcacctgcatctccccgacgagcgccatg 108
            ||||| |||||||||||||| ||  ||||||| || ||| | || |||||||||||  ||
Sbjct: 917  atgcccagccagcacatcgtggtgcggaggctgacgtgcgtgtcgccgacgagcgcggtg 976

                                                                   
Query: 109  atcgccctcggcagtgagatgtctggcggcatccaggacgtgcgcgtggaggaca 163
            ||||| || ||||| |||||||| ||||| |||   |||||||| | ||||||||
Sbjct: 977  atcgcgctgggcagcgagatgtcgggcgggatcagcgacgtgcgggcggaggaca 1031
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>dbj|AK105650.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F11, full
            insert sequence
          Length = 1746

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 94/115 (81%)
 Strand = Plus / Plus

                                                                        
Query: 49   atgccgagccagcacatcgtcgtcaggaggctcacctgcatctccccgacgagcgccatg 108
            ||||| |||||||||||||| ||  ||||||| || ||| | || |||||||||||  ||
Sbjct: 912  atgcccagccagcacatcgtggtgcggaggctgacgtgcgtgtcgccgacgagcgcggtg 971

                                                                   
Query: 109  atcgccctcggcagtgagatgtctggcggcatccaggacgtgcgcgtggaggaca 163
            ||||| || ||||| |||||||| ||||| |||   |||||||| | ||||||||
Sbjct: 972  atcgcgctgggcagcgagatgtcgggcgggatcagcgacgtgcgggcggaggaca 1026
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>dbj|AK073364.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033029B15, full
            insert sequence
          Length = 1756

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 94/115 (81%)
 Strand = Plus / Plus

                                                                        
Query: 49   atgccgagccagcacatcgtcgtcaggaggctcacctgcatctccccgacgagcgccatg 108
            ||||| |||||||||||||| ||  ||||||| || ||| | || |||||||||||  ||
Sbjct: 922  atgcccagccagcacatcgtggtgcggaggctgacgtgcgtgtcgccgacgagcgcggtg 981

                                                                   
Query: 109  atcgccctcggcagtgagatgtctggcggcatccaggacgtgcgcgtggaggaca 163
            ||||| || ||||| |||||||| ||||| |||   |||||||| | ||||||||
Sbjct: 982  atcgcgctgggcagcgagatgtcgggcgggatcagcgacgtgcgggcggaggaca 1036
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>gb|AY109222.1| Zea mays PCO091475 mRNA sequence
          Length = 813

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                   
Query: 136 ggcatccaggacgtgcgcgtggaggacaacattgccatcaacaccgagtcggccgt 191
           |||||||||||||||||||  ||||||| ||  || |||||||||||||| |||||
Sbjct: 7   ggcatccaggacgtgcgcgccgaggacatcacggcgatcaacaccgagtctgccgt 62
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                          
Query: 13      aagagcggctgggacgagtacggcatc 39
               |||||||||||||||||||||||||||
Sbjct: 8835788 aagagcggctgggacgagtacggcatc 8835814
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>dbj|AP004801.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0613F08
          Length = 142937

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                        
Query: 13    aagagcggctgggacgagtacggcatc 39
             |||||||||||||||||||||||||||
Sbjct: 40806 aagagcggctgggacgagtacggcatc 40832
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>dbj|AP006844.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0052K15
          Length = 156250

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                         
Query: 13     aagagcggctgggacgagtacggcatc 39
              |||||||||||||||||||||||||||
Sbjct: 134867 aagagcggctgggacgagtacggcatc 134893
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>dbj|AK106194.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-E05, full
           insert sequence
          Length = 1567

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 13  aagagcggctgggacgagtacggcatc 39
           |||||||||||||||||||||||||||
Sbjct: 781 aagagcggctgggacgagtacggcatc 807
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>dbj|AK061146.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-D06, full
           insert sequence
          Length = 1660

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 13  aagagcggctgggacgagtacggcatc 39
           |||||||||||||||||||||||||||
Sbjct: 874 aagagcggctgggacgagtacggcatc 900
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>dbj|AK059595.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-D10, full
            insert sequence
          Length = 1812

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                       
Query: 13   aagagcggctgggacgagtacggcatc 39
            |||||||||||||||||||||||||||
Sbjct: 1011 aagagcggctgggacgagtacggcatc 1037
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>ref|NM_123552.1| Arabidopsis thaliana polygalacturonase AT5G41870 mRNA, complete cds
          Length = 1350

 Score = 48.1 bits (24), Expect = 0.012
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 7   gcggtgaagagcggctgggacgagtacggcat 38
           |||||||||||||| ||||||||||| |||||
Sbjct: 772 gcggtgaagagcggttgggacgagtatggcat 803
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>gb|BT015129.1| Arabidopsis thaliana At5g41870 gene, complete cds
          Length = 1505

 Score = 48.1 bits (24), Expect = 0.012
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 7   gcggtgaagagcggctgggacgagtacggcat 38
           |||||||||||||| ||||||||||| |||||
Sbjct: 852 gcggtgaagagcggttgggacgagtatggcat 883
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>emb|BX831722.1|CNS0A0Y2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH25ZH04 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1536

 Score = 48.1 bits (24), Expect = 0.012
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 7   gcggtgaagagcggctgggacgagtacggcat 38
           |||||||||||||| ||||||||||| |||||
Sbjct: 858 gcggtgaagagcggttgggacgagtatggcat 889
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>emb|BX830657.1|CNS0A0RJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS10ZF11 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1491

 Score = 48.1 bits (24), Expect = 0.012
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 7   gcggtgaagagcggctgggacgagtacggcat 38
           |||||||||||||| ||||||||||| |||||
Sbjct: 805 gcggtgaagagcggttgggacgagtatggcat 836
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>dbj|AB016871.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K16L22
          Length = 79109

 Score = 48.1 bits (24), Expect = 0.012
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 7     gcggtgaagagcggctgggacgagtacggcat 38
             |||||||||||||| ||||||||||| |||||
Sbjct: 60737 gcggtgaagagcggttgggacgagtatggcat 60706
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>ref|NM_192821.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1341

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 13  aagagcggctgggacgagtacggcat 38
           ||||| ||||||||||||||||||||
Sbjct: 772 aagagtggctgggacgagtacggcat 797
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 13       aagagcggctgggacgagtacggcat 38
                ||||| ||||||||||||||||||||
Sbjct: 24627707 aagagtggctgggacgagtacggcat 24627732
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>dbj|AP003328.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1040D09
          Length = 148102

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 13    aagagcggctgggacgagtacggcat 38
             ||||| ||||||||||||||||||||
Sbjct: 53670 aagagtggctgggacgagtacggcat 53695
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>dbj|AK099329.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033013K19, full
           insert sequence
          Length = 949

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 13  aagagcggctgggacgagtacggcat 38
           ||||| ||||||||||||||||||||
Sbjct: 218 aagagtggctgggacgagtacggcat 243
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>dbj|AK058453.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-H05, full
           insert sequence
          Length = 1151

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 13  aagagcggctgggacgagtacggcat 38
           ||||| ||||||||||||||||||||
Sbjct: 421 aagagtggctgggacgagtacggcat 446
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>gb|AC102285.7| Mus musculus chromosome 19, clone RP24-329P13, complete sequence
          Length = 174894

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 72     caggaggctcacctgcatct 91
              ||||||||||||||||||||
Sbjct: 143223 caggaggctcacctgcatct 143242
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>ref|XM_543065.2| PREDICTED: Canis familiaris similar to Transcription factor AP-2
           gamma (AP2-gamma) (Activating enhancer-binding protein 2
           gamma) (Transcription factor ERF-1), transcript variant
           1 (LOC485941), mRNA
          Length = 1574

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 134 gcggcatccaggacgtgcgcgtgg 157
           |||||||||||| |||||||||||
Sbjct: 697 gcggcatccagggcgtgcgcgtgg 674
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>ref|XM_862309.1| PREDICTED: Canis familiaris similar to Transcription factor AP-2
           gamma (AP2-gamma) (Activating enhancer-binding protein 2
           gamma) (Transcription factor ERF-1), transcript variant
           2 (LOC485941), mRNA
          Length = 1529

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 134 gcggcatccaggacgtgcgcgtgg 157
           |||||||||||| |||||||||||
Sbjct: 697 gcggcatccagggcgtgcgcgtgg 674
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>gb|AC157912.4| Mus musculus chromosome 19, clone RP24-241F10, complete sequence
          Length = 153690

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 72     caggaggctcacctgcatct 91
              ||||||||||||||||||||
Sbjct: 133708 caggaggctcacctgcatct 133689
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>gb|AC124864.3| Homo sapiens BAC clone RP11-570J4 from 4, complete sequence
          Length = 166797

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 106   atgatcgccctcggcagtga 125
             ||||||||||||||||||||
Sbjct: 53030 atgatcgccctcggcagtga 53049
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>gb|AC116622.6| Homo sapiens BAC clone RP11-312L16 from 4, complete sequence
          Length = 148850

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 106   atgatcgccctcggcagtga 125
             ||||||||||||||||||||
Sbjct: 83626 atgatcgccctcggcagtga 83645
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>gb|AY107818.1| Zea mays PCO140658 mRNA sequence
          Length = 844

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 13  aagagcggctgggacgagtacggc 36
           |||||||| |||||||||||||||
Sbjct: 121 aagagcgggtgggacgagtacggc 144
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>emb|AJ845083.2| Streptomyces tenjimariensis istamycin biosynthesis cluster, strain ATCC
             31603
          Length = 67904

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 26    acgagtacggcatccggttc 45
             ||||||||||||||||||||
Sbjct: 40223 acgagtacggcatccggttc 40204
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>emb|AJ295704.1|MMU295704 Mus musculus partial Fas/ApoI gene, exons 3-9
          Length = 14203

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 72   caggaggctcacctgcatct 91
            ||||||||||||||||||||
Sbjct: 3126 caggaggctcacctgcatct 3145


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,170,725
Number of Sequences: 3902068
Number of extensions: 1170725
Number of successful extensions: 77630
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77451
Number of HSP's gapped (non-prelim): 178
length of query: 221
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 199
effective length of database: 17,147,199,772
effective search space: 3412292754628
effective search space used: 3412292754628
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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