>RPOZ_MYCTU (P66721) DNA-directed RNA polymerase omega chain (EC 2.7.7.6) (RNAP|
           omega subunit) (Transcriptase omega chain) (RNA
           polymerase omega subunit)
          Length = 110

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +2

Query: 143 HDAPISVTDPRLDVLCARIVKYYSLRRFVAETGRAVEE 256
           +D P+ +T+P +D L  R+   Y+L  + A+  R + +
Sbjct: 29  YDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQIND 66

>RPOZ_MYCLE (Q9CCQ6) DNA-directed RNA polymerase omega chain (EC 2.7.7.6) (RNAP|
           omega subunit) (Transcriptase omega chain) (RNA
           polymerase omega subunit)
          Length = 110

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +2

Query: 143 HDAPISVTDPRLDVLCARIVKYYSLRRFVAETGRAVEE 256
           +D P+ +T+P +D L  R+   Y+L  + A+  R + +
Sbjct: 29  YDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQIND 66

>RPOZ_MYCBO (P66722) DNA-directed RNA polymerase omega chain (EC 2.7.7.6) (RNAP|
           omega subunit) (Transcriptase omega chain) (RNA
           polymerase omega subunit)
          Length = 110

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +2

Query: 143 HDAPISVTDPRLDVLCARIVKYYSLRRFVAETGRAVEE 256
           +D P+ +T+P +D L  R+   Y+L  + A+  R + +
Sbjct: 29  YDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQIND 66

>RPOZ_CORGL (Q8NQ43) DNA-directed RNA polymerase omega chain (EC 2.7.7.6) (RNAP|
           omega subunit) (Transcriptase omega chain) (RNA
           polymerase omega subunit)
          Length = 97

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 137 ATHDAPISVTDPRLDVLCARIVKYYSLRRFVAETGRAV 250
           A  D P+ +T P +D L  ++   Y+L  F A+  R +
Sbjct: 15  AVFDPPVGITAPPIDELLDKVTSKYALVIFAAKRARQI 52

>RPOZ_COREF (Q8FT46) DNA-directed RNA polymerase omega chain (EC 2.7.7.6) (RNAP|
           omega subunit) (Transcriptase omega chain) (RNA
           polymerase omega subunit)
          Length = 97

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 137 ATHDAPISVTDPRLDVLCARIVKYYSLRRFVAETGRAV 250
           A  D P+ +T P +D L  ++   Y+L  F A+  R +
Sbjct: 15  AVFDPPMGITAPPIDELLDKVTSKYALVIFAAKRARQI 52

>PSD3_TOBAC (P93768) Probable 26S proteasome non-ATPase regulatory subunit 3|
           (26S proteasome subunit S3) (Nuclear antigen 21D7)
          Length = 488

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = +2

Query: 71  VLLYICQAAHFLDVAACNASSLATHDAPISVTDPRLDVLCARIVKYYSL 217
           VL+++     + +  AC+++S+A      +V    +DVL +R+  YYSL
Sbjct: 125 VLIFLIDQKKYNEAKACSSASIARLK---TVNRRTVDVLASRLYFYYSL 170


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,545,099
Number of Sequences: 219361
Number of extensions: 281814
Number of successful extensions: 1049
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 80,573,946
effective HSP length: 61
effective length of database: 67,192,925
effective search space used: 1612630200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)