ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast76g05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_190685.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1182 Score = 331 bits (167), Expect = 6e-88 Identities = 227/247 (91%) Strand = Plus / Plus Query: 11 ctccacctctgcgcgcgccgccccggctgcttctgccacccctacggcagcggcgtcccc 70 ||||| |||||||| ||||| ||| |||||||||||||||||||||| |||||||||| Sbjct: 661 ctccatctctgcgcccgccgtcccaactgcttctgccacccctacggcgacggcgtcccc 720 Query: 71 gtcctcctctacatctgccaggccgcgcacttcctcgacgtcgccgcctgcaacgcctcc 130 |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 721 atcctgctctacatctgccaggccgcgcacttcctcgacgtcgcctcctgcaacgcctcc 780 Query: 131 tccctcgccacccacgacgcacccatctccgtcaccgatccccgcctcgacgtcctctgc 190 |||| | || ||||| |||| ||||||||||||||||||| |||||||||||||||||| Sbjct: 781 tcccgctccctccacgccgcatccatctccgtcaccgatccacgcctcgacgtcctctgc 840 Query: 191 gcgcgcatcgtcaagtactactcgctccgccgcttcgtcgccgagacgggccgcgccgtc 250 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | | Sbjct: 841 gcgcgcatcgtcaagtactactcgctccgccgcttcgtcgccgagacggggcgcgcggcc 900 Query: 251 gaggagt 257 ||||||| Sbjct: 901 gaggagt 907
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 331 bits (167), Expect = 6e-88 Identities = 227/247 (91%) Strand = Plus / Plus Query: 11 ctccacctctgcgcgcgccgccccggctgcttctgccacccctacggcagcggcgtcccc 70 ||||| |||||||| ||||| ||| |||||||||||||||||||||| |||||||||| Sbjct: 37127758 ctccatctctgcgcccgccgtcccaactgcttctgccacccctacggcgacggcgtcccc 37127817 Query: 71 gtcctcctctacatctgccaggccgcgcacttcctcgacgtcgccgcctgcaacgcctcc 130 |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 37127818 atcctgctctacatctgccaggccgcgcacttcctcgacgtcgcctcctgcaacgcctcc 37127877 Query: 131 tccctcgccacccacgacgcacccatctccgtcaccgatccccgcctcgacgtcctctgc 190 |||| | || ||||| |||| ||||||||||||||||||| |||||||||||||||||| Sbjct: 37127878 tcccgctccctccacgccgcatccatctccgtcaccgatccacgcctcgacgtcctctgc 37127937 Query: 191 gcgcgcatcgtcaagtactactcgctccgccgcttcgtcgccgagacgggccgcgccgtc 250 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | | Sbjct: 37127938 gcgcgcatcgtcaagtactactcgctccgccgcttcgtcgccgagacggggcgcgcggcc 37127997 Query: 251 gaggagt 257 ||||||| Sbjct: 37127998 gaggagt 37128004
>dbj|AP003794.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0489B03 Length = 150381 Score = 331 bits (167), Expect = 6e-88 Identities = 227/247 (91%) Strand = Plus / Plus Query: 11 ctccacctctgcgcgcgccgccccggctgcttctgccacccctacggcagcggcgtcccc 70 ||||| |||||||| ||||| ||| |||||||||||||||||||||| |||||||||| Sbjct: 2414 ctccatctctgcgcccgccgtcccaactgcttctgccacccctacggcgacggcgtcccc 2473 Query: 71 gtcctcctctacatctgccaggccgcgcacttcctcgacgtcgccgcctgcaacgcctcc 130 |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 2474 atcctgctctacatctgccaggccgcgcacttcctcgacgtcgcctcctgcaacgcctcc 2533 Query: 131 tccctcgccacccacgacgcacccatctccgtcaccgatccccgcctcgacgtcctctgc 190 |||| | || ||||| |||| ||||||||||||||||||| |||||||||||||||||| Sbjct: 2534 tcccgctccctccacgccgcatccatctccgtcaccgatccacgcctcgacgtcctctgc 2593 Query: 191 gcgcgcatcgtcaagtactactcgctccgccgcttcgtcgccgagacgggccgcgccgtc 250 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | | Sbjct: 2594 gcgcgcatcgtcaagtactactcgctccgccgcttcgtcgccgagacggggcgcgcggcc 2653 Query: 251 gaggagt 257 ||||||| Sbjct: 2654 gaggagt 2660
>dbj|AP003289.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0683F02 Length = 153388 Score = 331 bits (167), Expect = 6e-88 Identities = 227/247 (91%) Strand = Plus / Plus Query: 11 ctccacctctgcgcgcgccgccccggctgcttctgccacccctacggcagcggcgtcccc 70 ||||| |||||||| ||||| ||| |||||||||||||||||||||| |||||||||| Sbjct: 128899 ctccatctctgcgcccgccgtcccaactgcttctgccacccctacggcgacggcgtcccc 128958 Query: 71 gtcctcctctacatctgccaggccgcgcacttcctcgacgtcgccgcctgcaacgcctcc 130 |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 128959 atcctgctctacatctgccaggccgcgcacttcctcgacgtcgcctcctgcaacgcctcc 129018 Query: 131 tccctcgccacccacgacgcacccatctccgtcaccgatccccgcctcgacgtcctctgc 190 |||| | || ||||| |||| ||||||||||||||||||| |||||||||||||||||| Sbjct: 129019 tcccgctccctccacgccgcatccatctccgtcaccgatccacgcctcgacgtcctctgc 129078 Query: 191 gcgcgcatcgtcaagtactactcgctccgccgcttcgtcgccgagacgggccgcgccgtc 250 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | | Sbjct: 129079 gcgcgcatcgtcaagtactactcgctccgccgcttcgtcgccgagacggggcgcgcggcc 129138 Query: 251 gaggagt 257 ||||||| Sbjct: 129139 gaggagt 129145
>dbj|AK107493.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-129-D04, full insert sequence Length = 1617 Score = 323 bits (163), Expect = 2e-85 Identities = 226/247 (91%) Strand = Plus / Plus Query: 11 ctccacctctgcgcgcgccgccccggctgcttctgccacccctacggcagcggcgtcccc 70 ||||| |||||||| ||||| ||| |||||||||||||||||||||| |||||||||| Sbjct: 797 ctccatctctgcgcccgccgtcccaactgcttctgccacccctacggcgacggcgtcccc 856 Query: 71 gtcctcctctacatctgccaggccgcgcacttcctcgacgtcgccgcctgcaacgcctcc 130 |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 857 atcctgctctacatctgccaggccgcgcacttcctcgacgtcgcctcctgcaacgcctct 916 Query: 131 tccctcgccacccacgacgcacccatctccgtcaccgatccccgcctcgacgtcctctgc 190 |||| | || ||||| |||| ||||||||||||||||||| |||||||||||||||||| Sbjct: 917 tcccgctccctccacgccgcatccatctccgtcaccgatccacgcctcgacgtcctctgc 976 Query: 191 gcgcgcatcgtcaagtactactcgctccgccgcttcgtcgccgagacgggccgcgccgtc 250 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | | Sbjct: 977 gcgcgcatcgtcaagtactactcgctccgccgcttcgtcgccgagacggggcgcgcggcc 1036 Query: 251 gaggagt 257 ||||||| Sbjct: 1037 gaggagt 1043
>emb|AM048825.1| Oryza sativa mRNA for sialyltransferase-like protein (stv1 gene) Length = 1535 Score = 58.0 bits (29), Expect = 1e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 160 cgtcaccgatccccgcctcgacgtcctctgcgcgcgcatcgtcaagtactactcgct 216 ||||||||| | |||||||||| || ||||||||||||| ||||||||||||||| Sbjct: 961 cgtcaccgacgcgcgcctcgacgcgctgtgcgcgcgcatcgccaagtactactcgct 1017
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 58.0 bits (29), Expect = 1e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 160 cgtcaccgatccccgcctcgacgtcctctgcgcgcgcatcgtcaagtactactcgct 216 ||||||||| | |||||||||| || ||||||||||||| ||||||||||||||| Sbjct: 2546326 cgtcaccgacgcgcgcctcgacgcgctgtgcgcgcgcatcgccaagtactactcgct 2546382
>dbj|AK105865.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-A06, full insert sequence Length = 1475 Score = 58.0 bits (29), Expect = 1e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 160 cgtcaccgatccccgcctcgacgtcctctgcgcgcgcatcgtcaagtactactcgct 216 ||||||||| | |||||||||| || ||||||||||||| ||||||||||||||| Sbjct: 853 cgtcaccgacgcgcgcctcgacgcgctgtgcgcgcgcatcgccaagtactactcgct 909
>dbj|AK058389.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-A04, full insert sequence Length = 1475 Score = 58.0 bits (29), Expect = 1e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 160 cgtcaccgatccccgcctcgacgtcctctgcgcgcgcatcgtcaagtactactcgct 216 ||||||||| | |||||||||| || ||||||||||||| ||||||||||||||| Sbjct: 853 cgtcaccgacgcgcgcctcgacgcgctgtgcgcgcgcatcgccaagtactactcgct 909
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 58.0 bits (29), Expect = 1e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 160 cgtcaccgatccccgcctcgacgtcctctgcgcgcgcatcgtcaagtactactcgct 216 ||||||||| | |||||||||| || ||||||||||||| ||||||||||||||| Sbjct: 2546270 cgtcaccgacgcgcgcctcgacgcgctgtgcgcgcgcatcgccaagtactactcgct 2546326
>emb|AL929350.3|CNS08CCE Oryza sativa chromosome 12, . BAC OSJNBb0104J15 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 136490 Score = 58.0 bits (29), Expect = 1e-05 Identities = 50/57 (87%) Strand = Plus / Minus Query: 160 cgtcaccgatccccgcctcgacgtcctctgcgcgcgcatcgtcaagtactactcgct 216 ||||||||| | |||||||||| || ||||||||||||| ||||||||||||||| Sbjct: 121683 cgtcaccgacgcgcgcctcgacgcgctgtgcgcgcgcatcgccaagtactactcgct 121627
>ref|XM_473101.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1155 Score = 50.1 bits (25), Expect = 0.003 Identities = 28/29 (96%) Strand = Plus / Plus Query: 188 tgcgcgcgcatcgtcaagtactactcgct 216 |||||||| |||||||||||||||||||| Sbjct: 805 tgcgcgcggatcgtcaagtactactcgct 833
>emb|AL731626.4|OSJN00271 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0002J11, complete sequence Length = 143582 Score = 50.1 bits (25), Expect = 0.003 Identities = 28/29 (96%) Strand = Plus / Plus Query: 188 tgcgcgcgcatcgtcaagtactactcgct 216 |||||||| |||||||||||||||||||| Sbjct: 65385 tgcgcgcggatcgtcaagtactactcgct 65413
>emb|AL662969.3|OSJN00169 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L24, complete sequence Length = 164577 Score = 50.1 bits (25), Expect = 0.003 Identities = 28/29 (96%) Strand = Plus / Plus Query: 188 tgcgcgcgcatcgtcaagtactactcgct 216 |||||||| |||||||||||||||||||| Sbjct: 8005 tgcgcgcggatcgtcaagtactactcgct 8033
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 50.1 bits (25), Expect = 0.003 Identities = 28/29 (96%) Strand = Plus / Plus Query: 188 tgcgcgcgcatcgtcaagtactactcgct 216 |||||||| |||||||||||||||||||| Sbjct: 25281446 tgcgcgcggatcgtcaagtactactcgct 25281474
>dbj|AK104762.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-H03, full insert sequence Length = 1346 Score = 50.1 bits (25), Expect = 0.003 Identities = 28/29 (96%) Strand = Plus / Plus Query: 188 tgcgcgcgcatcgtcaagtactactcgct 216 |||||||| |||||||||||||||||||| Sbjct: 867 tgcgcgcggatcgtcaagtactactcgct 895
>dbj|AK104647.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-H03, full insert sequence Length = 1346 Score = 50.1 bits (25), Expect = 0.003 Identities = 28/29 (96%) Strand = Plus / Plus Query: 188 tgcgcgcgcatcgtcaagtactactcgct 216 |||||||| |||||||||||||||||||| Sbjct: 867 tgcgcgcggatcgtcaagtactactcgct 895
>dbj|AK070719.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023058L14, full insert sequence Length = 1351 Score = 50.1 bits (25), Expect = 0.003 Identities = 28/29 (96%) Strand = Plus / Plus Query: 188 tgcgcgcgcatcgtcaagtactactcgct 216 |||||||| |||||||||||||||||||| Sbjct: 872 tgcgcgcggatcgtcaagtactactcgct 900
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Plus Query: 230 gccgagacgggccgcgccgtc 250 ||||||||||||||||||||| Sbjct: 2890160 gccgagacgggccgcgccgtc 2890180
>emb|AL021940.1|HS117P20 Human DNA sequence from clone RP1-117P20 on chromosome 1q24 Contains part of a novel gene (FLJ45155 FLJ10706 FLJ39174), the SELL gene for selectin L (lymphocyte adhesion molecule 1), the SELE gene for selectin E (endothelial adhesion molecule 1) and two novel genes (MGC9084), complete sequence Length = 141589 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Plus Query: 35 ggctgcttctgccacccctac 55 ||||||||||||||||||||| Sbjct: 10917 ggctgcttctgccacccctac 10937
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome Length = 5751492 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Plus Query: 113 gccgcctgcaacgcctcctcc 133 ||||||||||||||||||||| Sbjct: 2503385 gccgcctgcaacgcctcctcc 2503405
>emb|X92356.1|GO16S60 G.obscurus 16S ribosomal RNA (strain DSM43160) Length = 1482 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Minus Query: 162 tcaccgatccccgcctcgacg 182 ||||||||||||||||||||| Sbjct: 1452 tcaccgatccccgcctcgacg 1432
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Minus Query: 221 cgcttcgtcgccgagacgggc 241 ||||||||||||||||||||| Sbjct: 1178046 cgcttcgtcgccgagacgggc 1178026
>gb|AF098925.1|AF098925 Mus musculus sonic hedgehog (Shh) gene, promoter region Length = 731 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Plus Query: 125 gcctcctccctcgccacccac 145 ||||||||||||||||||||| Sbjct: 125 gcctcctccctcgccacccac 145
>ref|XM_464792.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1128 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 acgcctcctccctcgccacc 142 |||||||||||||||||||| Sbjct: 886 acgcctcctccctcgccacc 867
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 217 ccgccgcttcgtcgccgagacggg 240 ||||||||||||||| |||||||| Sbjct: 2017391 ccgccgcttcgtcgcggagacggg 2017414
>emb|Z78205.1|BHT1UL Bovine herpesvirus type 1 UL22-35 genes Length = 37000 Score = 40.1 bits (20), Expect = 3.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 217 ccgccgcttcgtcgccgagacgggccgc 244 |||||||||||||||| ||| ||||||| Sbjct: 5763 ccgccgcttcgtcgcccagaagggccgc 5736
>emb|AJ004801.1|BHV1CGEN Bovine herpesvirus type 1.1 complete genome Length = 135301 Score = 40.1 bits (20), Expect = 3.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 217 ccgccgcttcgtcgccgagacgggccgc 244 |||||||||||||||| ||| ||||||| Sbjct: 36563 ccgccgcttcgtcgcccagaagggccgc 36536
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 gccgcttcgtcgccgagacg 238 |||||||||||||||||||| Sbjct: 220639 gccgcttcgtcgccgagacg 220658
>emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genome; segment 1/16 Length = 349315 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 gccgcttcgtcgccgagacg 238 |||||||||||||||||||| Sbjct: 74910 gccgcttcgtcgccgagacg 74929
>dbj|AK154778.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630106I02 product:ribosomal protein S6 kinase polypeptide 3, full insert sequence Length = 3026 Score = 40.1 bits (20), Expect = 3.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 112 cgccgcctgcaacgcctcctccctcgccaccc 143 |||||||| || ||||||||||||| |||||| Sbjct: 228 cgccgccttcaccgcctcctccctccccaccc 197
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 gccgcttcgtcgccgagacg 238 |||||||||||||||||||| Sbjct: 721543 gccgcttcgtcgccgagacg 721524
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 acgcctcctccctcgccacc 142 |||||||||||||||||||| Sbjct: 8231352 acgcctcctccctcgccacc 8231371
>ref|XM_576965.1| PREDICTED: Rattus norvegicus similar to ribosomal protein S6 kinase 2 (LOC501560), mRNA Length = 2793 Score = 40.1 bits (20), Expect = 3.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 112 cgccgcctgcaacgcctcctccctcgccaccc 143 |||||||| || ||||||||||||| |||||| Sbjct: 435 cgccgccttcaccgcctcctccctccccaccc 404
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 87 gccaggccgcgcacttcctcgacg 110 ||||||||| |||||||||||||| Sbjct: 1053149 gccaggccgagcacttcctcgacg 1053126
>ref|XM_230620.3| PREDICTED: Rattus norvegicus similar to RIKEN cDNA C130053K05 gene; similar to dJ718P11.1.1 (novel class II aminotransferase similar to serine palmotyltransferase (isoform 1)) (predicted) (LOC296188), mRNA Length = 2316 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 gtccccgtcctcctctacat 84 |||||||||||||||||||| Sbjct: 1927 gtccccgtcctcctctacat 1946
>dbj|AP004117.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1134_F06 Length = 130968 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 acgcctcctccctcgccacc 142 |||||||||||||||||||| Sbjct: 63498 acgcctcctccctcgccacc 63517
>dbj|AP005614.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0090H18 Length = 174842 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 acgcctcctccctcgccacc 142 |||||||||||||||||||| Sbjct: 8023 acgcctcctccctcgccacc 8042
>emb|AL808146.3| Mouse DNA sequence from clone RP23-52L10 on chromosome X, complete sequence Length = 159820 Score = 40.1 bits (20), Expect = 3.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 112 cgccgcctgcaacgcctcctccctcgccaccc 143 |||||||| || ||||||||||||| |||||| Sbjct: 10813 cgccgccttcaccgcctcctccctccccaccc 10782 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,604,891 Number of Sequences: 3902068 Number of extensions: 1604891 Number of successful extensions: 35827 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 35128 Number of HSP's gapped (non-prelim): 699 length of query: 257 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 235 effective length of database: 17,147,199,772 effective search space: 4029591946420 effective search space used: 4029591946420 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
