ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast76f11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYQ_XYLFT (Q87DU6) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glu... 27 0.38
2SYQ_XYLFA (Q9PDP1) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glu... 27 0.38
3ATS20_MOUSE (P59511) ADAMTS-20 precursor (EC 3.4.24.-) (A disint... 29 3.6
4RS13_THEVO (Q97B96) 30S ribosomal protein S13P 28 4.7
5CCNL1_CHICK (Q5ZJP9) Cyclin-L1 28 6.1
6CYSH_NEIMA (Q9JUD5) Phosphoadenosine phosphosulfate reductase (E... 28 8.0
7SOX10_CHICK (Q9W757) Transcription factor SOX-10 (cSOX10) 28 8.0
8ZDH19_HUMAN (Q8WVZ1) Probable palmitoyltransferase ZDHHC19 (EC 2... 28 8.0
9FINC_PLEWA (Q91289) Fibronectin (FN) (Fragment) 28 8.0
10ZBT34_HUMAN (Q8NCN2) Zinc finger and BTB domain-containing prote... 28 8.0

>SYQ_XYLFT (Q87DU6) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA|
           ligase) (GlnRS)
          Length = 580

 Score = 26.9 bits (58), Expect(2) = 0.38
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 126 LPKMAHLEHPIPWHGSPKQPSHPTYLKF 43
           LP  +HL  P+   G P++PS P  ++F
Sbjct: 256 LPNNSHLLKPLLDKGFPQEPSQPRQIEF 283



 Score = 23.9 bits (50), Expect(2) = 0.38
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 269 VTHSLADFDFHGHRP 225
           +THSL   +F  HRP
Sbjct: 231 ITHSLCTLEFEDHRP 245



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>SYQ_XYLFA (Q9PDP1) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA|
           ligase) (GlnRS)
          Length = 580

 Score = 26.9 bits (58), Expect(2) = 0.38
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 126 LPKMAHLEHPIPWHGSPKQPSHPTYLKF 43
           LP  +HL  P+   G P++PS P  ++F
Sbjct: 256 LPNNSHLLKPLLDKGFPQEPSQPRQIEF 283



 Score = 23.9 bits (50), Expect(2) = 0.38
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 269 VTHSLADFDFHGHRP 225
           +THSL   +F  HRP
Sbjct: 231 ITHSLCTLEFEDHRP 245



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>ATS20_MOUSE (P59511) ADAMTS-20 precursor (EC 3.4.24.-) (A disintegrin and|
            metalloproteinase with thrombospondin motifs 20) (ADAM-TS
            20) (ADAM-TS20)
          Length = 1906

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +1

Query: 169  CPTAR*PRTHKGCWSIKTAGRWP-WKSKSAKEC 264
            C     PRTHK C S    GR P WK+   KEC
Sbjct: 1452 CSHLHKPRTHKACRS----GRCPSWKANKWKEC 1480



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>RS13_THEVO (Q97B96) 30S ribosomal protein S13P|
          Length = 171

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 143 GMNRKPGYGAQLRANLEPTKGVGRLRQQD 229
           G+  + GY    R NL+PTK +G L++ +
Sbjct: 54  GIGLRLGYAIAERLNLQPTKKIGELKEDE 82



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>CCNL1_CHICK (Q5ZJP9) Cyclin-L1|
          Length = 534

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = +3

Query: 63  GSAASVSRATESGAPSGPFLVSRTGDAG*TGSRVTVP 173
           GSAA+V+ A   G P+GP     T  A  TGS   VP
Sbjct: 6   GSAAAVA-AVAGGGPAGPHAAGVTAGAVTTGSGAPVP 41



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>CYSH_NEIMA (Q9JUD5) Phosphoadenosine phosphosulfate reductase (EC 1.8.4.8)|
           (PAPS reductase, thioredoxin dependent) (PAdoPS
           reductase) (3'-phosphoadenylylsulfate reductase) (PAPS
           sulfotransferase)
          Length = 244

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 223 AGRWPWKSKSAKEC 264
           AGRW W+ K++KEC
Sbjct: 227 AGRWWWEDKNSKEC 240



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>SOX10_CHICK (Q9W757) Transcription factor SOX-10 (cSOX10)|
          Length = 461

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 120 KMAHLEHPIPWHGSPKQPSHPTY 52
           K AHL+H  P  GSP    HP +
Sbjct: 201 KNAHLDHRHPGEGSPMSDGHPEH 223



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>ZDH19_HUMAN (Q8WVZ1) Probable palmitoyltransferase ZDHHC19 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 19) (DHHC-19)
          Length = 282

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 249 FRLPWPPSCCLNRP 208
           FRL W P CC +RP
Sbjct: 109 FRLQWCPKCCFHRP 122



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>FINC_PLEWA (Q91289) Fibronectin (FN) (Fragment)|
          Length = 1328

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 92   GIGCSKWAIFGKQNWRCGMNRKPGYG 169
            G  CS     G+Q WRC   R+PG G
Sbjct: 1265 GAICSCTCYGGQQGWRCDNCRRPGAG 1290



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>ZBT34_HUMAN (Q8NCN2) Zinc finger and BTB domain-containing protein 34|
          Length = 500

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +2

Query: 140 CGMNRKPGYGAQLRANLEPTKGVGRLRQQDGGHGSRNPLRSV 265
           C   R+P   + LR    P+K + R R Q+ GH  R    SV
Sbjct: 168 CSQGRQPTASSDLRMETTPSKAL-RSRLQEEGHSDRGSSGSV 208


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,136,024
Number of Sequences: 219361
Number of extensions: 908433
Number of successful extensions: 2528
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2527
length of database: 80,573,946
effective HSP length: 65
effective length of database: 66,315,481
effective search space used: 1591571544
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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