Clone Information

BLAST Search Result

Clone Name	bast76f07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast prec...	66	3e-11
2	ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloro...	64	1e-10
3	ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precur...	63	3e-10
4	ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast prec...	62	5e-10
5	ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precur...	61	1e-09
6	ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precur...	59	7e-09
7	ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)	52	5e-07
8	ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor	52	6e-07
9	ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precur...	51	1e-06
10	ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor	49	7e-06
11	ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precur...	49	7e-06
12	CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit...	39	0.007
13	CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit...	39	0.007
14	CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit...	37	0.027
15	CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit...	37	0.027
16	CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit...	37	0.027
17	CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit...	37	0.027
18	RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif p...	36	0.046
19	RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, ch...	35	0.079
20	CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcrip...	35	0.10
21	RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA	35	0.10
22	RU17_YEAST (Q00916) U1 small nuclear ribonucleoprotein 70 kDa ho...	34	0.13
23	RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HS...	34	0.13
24	RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ss...	34	0.13
25	RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif pro...	33	0.23
26	BOLL_MACFA (Q8WP23) Protein boule-like	33	0.39
27	BOLL_HUMAN (Q8N9W6) Protein boule-like	33	0.39
28	CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (C...	33	0.39
29	ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1 (He...	32	0.51
30	ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1 (...	32	0.51
31	ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1 (...	32	0.51
32	DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autoso...	32	0.51
33	ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1 (...	32	0.51
34	RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Co...	32	0.51
35	RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (He...	32	0.51
36	DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)	32	0.51
37	ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1 (...	32	0.51
38	CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (C...	32	0.51
39	ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 ...	32	0.67
40	BOLL_MOUSE (Q924M5) Protein boule-like	32	0.87
41	NOP12_CANGA (Q6FUS6) Nucleolar protein 12	32	0.87
42	RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif p...	32	0.87
43	NCBP2_ASHGO (Q754W7) Nuclear cap-binding protein subunit 2	31	1.1
44	FCA_ARATH (O04425) Flowering time control protein FCA	31	1.1
45	ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hn...	31	1.5
46	ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (...	31	1.5
47	ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (...	31	1.5
48	RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C...	30	1.9
49	NOP12_SCHPO (O13741) Nucleolar protein 12	30	1.9
50	DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autoso...	30	2.5
51	DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autoso...	30	2.5
52	PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-bin...	30	2.5
53	RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif pro...	30	2.5
54	RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif pro...	30	2.5
55	RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif pro...	30	2.5
56	RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif p...	30	2.5
57	RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif p...	30	2.5
58	DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autoso...	30	2.5
59	RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif pro...	30	2.5
60	RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif pro...	30	2.5
61	RBM14_PONPY (Q5RC41) RNA-binding protein 14 (RNA-binding motif p...	30	2.5
62	RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif p...	30	2.5
63	RBM14_HUMAN (Q96PK6) RNA-binding protein 14 (RNA-binding motif p...	30	2.5
64	RBM14_BOVIN (Q5EA36) RNA-binding protein 14 (RNA-binding motif p...	30	2.5
65	HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)	30	2.5
66	NSR1_YEAST (P27476) Nuclear localization sequence-binding protei...	30	3.3
67	ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/...	30	3.3
68	SGN1_YEAST (P40561) RNA-binding protein SGN1	30	3.3
69	ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/...	30	3.3
70	RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 h...	30	3.3
71	G3BP_MOUSE (P97855) Ras-GTPase-activating protein-binding protei...	29	4.3
72	G3BP_HUMAN (Q13283) Ras-GTPase-activating protein-binding protei...	29	4.3
73	NOP12_KLULA (Q6CKV6) Nucleolar protein 12	29	4.3
74	NOP12_YEAST (Q08208) Nucleolar protein 12	29	5.7
75	RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2	29	5.7
76	RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-bindin...	29	5.7
77	DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in azoosp...	28	7.4
78	DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in azoosp...	28	7.4
79	RNP1_CAEEL (Q10667) RNA-binding protein rnp-1	28	7.4
80	RSD1_SCHPO (O13845) RNA-binding protein rsd1	28	7.4
81	TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein	28	7.4
82	LARK_DROME (Q94901) RNA-binding protein lark	28	7.4
83	RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-ri...	28	9.7
84	DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in azoosp...	28	9.7
85	SXL_DROSU (Q24668) Protein sex-lethal	28	9.7
86	SXL_DROME (P19339) Protein sex-lethal	28	9.7
87	RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 h...	28	9.7
88	RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 h...	28	9.7

>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)|
          Length = 291

 Score = 66.2 bits (160), Expect = 3e-11
 Identities = 30/38 (78%), Positives = 37/38 (97%)
 Frame = +3

Query: 321 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           LK+FVGNLPF+VDSA LAGLFE+AG+VEMVEV+YD++T
Sbjct: 87  LKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLT 124



 Score = 35.4 bits (80), Expect = 0.061
 Identities = 17/35 (48%), Positives = 23/35 (65%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDR 428
           +V+VGNL + VD   L  LF + G+V   +VVYDR
Sbjct: 208 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDR 242

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>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast|
           precursor
          Length = 289

 Score = 64.3 bits (155), Expect = 1e-10
 Identities = 30/38 (78%), Positives = 35/38 (92%)
 Frame = +3

Query: 321 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           LK+FVGNLPF VDSAQLA LFE AG+VEMVEV+YD++T
Sbjct: 91  LKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKIT 128



 Score = 35.4 bits (80), Expect = 0.061
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDR 428
           +V+VGNL + VD   L  LF + G V    V+YDR
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDR 239

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>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)|
          Length = 292

 Score = 63.2 bits (152), Expect = 3e-10
 Identities = 28/38 (73%), Positives = 37/38 (97%)
 Frame = +3

Query: 321 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           LK+FVGNLPF+VDSA LAGLFE+AG+VE+VEV+YD+++
Sbjct: 88  LKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLS 125



 Score = 35.4 bits (80), Expect = 0.061
 Identities = 17/35 (48%), Positives = 23/35 (65%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDR 428
           +V+VGNL + VD   L  LF + G+V   +VVYDR
Sbjct: 209 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDR 243

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>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)|
          Length = 273

 Score = 62.4 bits (150), Expect = 5e-10
 Identities = 28/38 (73%), Positives = 35/38 (92%)
 Frame = +3

Query: 321 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           LK+FVGNLPF+ DSA LA LFE+AG+VEMVEV+YD++T
Sbjct: 87  LKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLT 124



 Score = 34.7 bits (78), Expect = 0.10
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDR 428
           +V+VGNL + VD   L  LF + G V   +VVYDR
Sbjct: 189 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDR 223

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>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor|
           (RNA-binding protein cp29)
          Length = 342

 Score = 61.2 bits (147), Expect = 1e-09
 Identities = 29/38 (76%), Positives = 34/38 (89%)
 Frame = +3

Query: 321 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           LK+FVGNL F VDSAQLA LFE AG+VEMVEV+YD++T
Sbjct: 99  LKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVT 136



 Score = 34.3 bits (77), Expect = 0.13
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDR 428
           +++VGNL + VD   L  LF + G V    V+YDR
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDR 292

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>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)|
          Length = 279

 Score = 58.5 bits (140), Expect = 7e-09
 Identities = 27/38 (71%), Positives = 34/38 (89%)
 Frame = +3

Query: 321 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           LK+FVGNL F+ DSA LA LFE+AG+VEMVEV+YD++T
Sbjct: 87  LKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLT 124



 Score = 34.7 bits (78), Expect = 0.10
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDR 428
           +V+VGNL + VD   L  LF + G V   +VVYDR
Sbjct: 195 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDR 229

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>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)|
          Length = 233

 Score = 52.4 bits (124), Expect = 5e-07
 Identities = 23/37 (62%), Positives = 31/37 (83%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           K+FVGNLP+ VDS +LAG+F+ AG VE+ EV+Y+R T
Sbjct: 56  KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRET 92



 Score = 38.1 bits (87), Expect = 0.009
 Identities = 18/37 (48%), Positives = 25/37 (67%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           +V+VGNLP+ VD+++L  LF + G V    VV DR T
Sbjct: 150 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRET 186

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>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor|
          Length = 315

 Score = 52.0 bits (123), Expect = 6e-07
 Identities = 25/37 (67%), Positives = 30/37 (81%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           K+FVGNLP+ VDS  LA LFEQAG VE+ EV+Y+R T
Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDT 173



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 17/37 (45%), Positives = 25/37 (67%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           +++VGN+P+ +D A+L  LF + G V    VVYDR T
Sbjct: 231 RIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRET 267

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>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)|
          Length = 276

 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 23/37 (62%), Positives = 30/37 (81%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           K+FVGNLP+ +DS  LA LF+QAG VE+ EV+Y+R T
Sbjct: 98  KLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRET 134



 Score = 37.0 bits (84), Expect = 0.021
 Identities = 14/35 (40%), Positives = 24/35 (68%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDR 428
           +++VGN+P+ +D A+L  +F + G V    VV+DR
Sbjct: 192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDR 226

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>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor|
          Length = 324

 Score = 48.5 bits (114), Expect = 7e-06
 Identities = 20/37 (54%), Positives = 32/37 (86%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           +++VGNLPF++ S+QL+ +F +AG+V  VE+VYDR+T
Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVT 151

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>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor|
           (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3)
           (AtRBP33) (RNA-binding protein cp31)
          Length = 329

 Score = 48.5 bits (114), Expect = 7e-06
 Identities = 23/37 (62%), Positives = 30/37 (81%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           K+FVGNL + V+S  LA LFEQAG+VE+ EV+Y+R T
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRET 187



 Score = 40.8 bits (94), Expect = 0.001
 Identities = 19/37 (51%), Positives = 25/37 (67%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           +V+VGNLP+ VD+ +L  LF + G V    VVYDR T
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRET 281

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>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant|
           (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit,
           tau variant) (TauCstF-64)
          Length = 632

 Score = 38.5 bits (88), Expect = 0.007
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = +3

Query: 327 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           VFVGN+P+     QL  +F + GSV    +VYDR T
Sbjct: 18  VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRET 53

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>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant|
           (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit,
           tau variant) (TauCstF-64)
          Length = 616

 Score = 38.5 bits (88), Expect = 0.007
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = +3

Query: 327 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           VFVGN+P+     QL  +F + GSV    +VYDR T
Sbjct: 18  VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRET 53

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>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 580

 Score = 36.6 bits (83), Expect = 0.027
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +3

Query: 327 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           VFVGN+P+     QL  +F + G V    +VYDR T
Sbjct: 18  VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRET 53

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>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 572

 Score = 36.6 bits (83), Expect = 0.027
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +3

Query: 327 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           VFVGN+P+     QL  +F + G V    +VYDR T
Sbjct: 18  VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRET 53

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>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 36.6 bits (83), Expect = 0.027
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +3

Query: 327 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           VFVGN+P+     QL  +F + G V    +VYDR T
Sbjct: 18  VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRET 53

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>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 36.6 bits (83), Expect = 0.027
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +3

Query: 327 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           VFVGN+P+     QL  +F + G V    +VYDR T
Sbjct: 18  VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRET 53

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>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 430

 Score = 35.8 bits (81), Expect = 0.046
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = +3

Query: 327 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           VFVGNLP+ V+ + +   F   GS+  V +V D+MT
Sbjct: 289 VFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMT 324



 Score = 30.8 bits (68), Expect = 1.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 327 VFVGNLPFTVDSAQLAGLFEQAGSVEMV 410
           VFVGNLP T +  +L   F++ G +E V
Sbjct: 187 VFVGNLPVTCNKKKLKSFFKEYGQIESV 214

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>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast|
           precursor (PSRP-2)
          Length = 260

 Score = 35.0 bits (79), Expect = 0.079
 Identities = 12/35 (34%), Positives = 27/35 (77%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDR 428
           +++VGN+P  +++ +L  + E+ G++E+ EV+YD+
Sbjct: 85  RLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDK 119

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>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription|
           termination factor ctf1)
          Length = 363

 Score = 34.7 bits (78), Expect = 0.10
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +3

Query: 327 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           VFVGN+P+ V   Q+  +F Q G V+  ++V D  T
Sbjct: 9   VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPET 44

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>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA|
          Length = 101

 Score = 34.7 bits (78), Expect = 0.10
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +3

Query: 321 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           + ++VGNL + V  A L  +F + GSV+ V++  DR T
Sbjct: 1   MSIYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRET 38

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>RU17_YEAST (Q00916) U1 small nuclear ribonucleoprotein 70 kDa homolog|
          Length = 300

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +3

Query: 327 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           +F+G LP+ +D  +L   F + G +E + +V D++T
Sbjct: 109 IFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKIT 144

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>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA|
           binding protein SEB4) (CLL-associated antigen KW-5)
          Length = 216

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           K+FVG LP+    A L   FE  G +E   V+ DR T
Sbjct: 12  KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQT 48

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>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding|
           protein SEB4)
          Length = 237

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           K+FVG LP+    A L   FE  G +E   V+ DR T
Sbjct: 33  KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQT 69

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>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 428

 Score = 33.5 bits (75), Expect = 0.23
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +3

Query: 327 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           VFVGNLP+ VD + L   F   GS+  V +V + +T
Sbjct: 287 VFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLT 322



 Score = 31.2 bits (69), Expect = 1.1
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 327 VFVGNLPFTVDSAQLAGLFEQAGSVEMV 410
           VFVGNLP T +  +L   F++ G VE V
Sbjct: 185 VFVGNLPVTCNKKKLKSFFKEYGQVESV 212

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>BOLL_MACFA (Q8WP23) Protein boule-like|
          Length = 283

 Score = 32.7 bits (73), Expect = 0.39
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDR 428
           ++FVG + F  + + L   F Q GSV+ V++V DR
Sbjct: 34  RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR 68

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>BOLL_HUMAN (Q8N9W6) Protein boule-like|
          Length = 283

 Score = 32.7 bits (73), Expect = 0.39
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDR 428
           ++FVG + F  + + L   F Q GSV+ V++V DR
Sbjct: 34  RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR 68

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>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)|
           (RNA-binding protein BRUNOL-2) (Deadenylation factor
           CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding
           protein) (EDEN-BP)
          Length = 486

 Score = 32.7 bits (73), Expect = 0.39
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +3

Query: 321 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDR 428
           +K+FVG +P T     L  LFEQ G+V  + V+ DR
Sbjct: 16  IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDR 51

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>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand RNA-binding
           protein) (hnRNP core protein A1) (HDP)
          Length = 319

 Score = 32.3 bits (72), Expect = 0.51
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDR 428
           K+FVG +    +   L   FEQ G +E++E++ DR
Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR 139

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>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1) (HDP-1)
           (Topoisomerase-inhibitor suppressed)
          Length = 319

 Score = 32.3 bits (72), Expect = 0.51
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDR 428
           K+FVG +    +   L   FEQ G +E++E++ DR
Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR 139

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>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1)
          Length = 319

 Score = 32.3 bits (72), Expect = 0.51
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDR 428
           K+FVG +    +   L   FEQ G +E++E++ DR
Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR 139

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>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1)
          Length = 296

 Score = 32.3 bits (72), Expect = 0.51
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +3

Query: 327 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDR 428
           VFVG +   +D  ++ G F + GSV+ V+++ DR
Sbjct: 42  VFVGGIDVRMDETEIRGFFARYGSVKEVKIITDR 75

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>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand RNA-binding
           protein) (hnRNP core protein A1) (Unwinding protein 1)
           (UP1) (Fragment)
          Length = 195

 Score = 32.3 bits (72), Expect = 0.51
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDR 428
           K+FVG +    +   L   FEQ G +E++E++ DR
Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR 139

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>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of|
           activating protein 1 and estrogen receptors)
           (Coactivator of AP-1 and ERs) (Transcription coactivator
           CAPER)
          Length = 530

 Score = 32.3 bits (72), Expect = 0.51
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = +3

Query: 321 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           ++++VG+L F +    L G+FE  G +E ++++ D  T
Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSET 287

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>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular|
           carcinoma protein 1) (Splicing factor HCC1)
          Length = 530

 Score = 32.3 bits (72), Expect = 0.51
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = +3

Query: 321 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           ++++VG+L F +    L G+FE  G +E ++++ D  T
Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSET 287

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>DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)|
          Length = 289

 Score = 32.3 bits (72), Expect = 0.51
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +3

Query: 327 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDR 428
           VFVG +   ++ A++   FEQ G+V+ V+++ DR
Sbjct: 38  VFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDR 71

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>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand RNA-binding
           protein) (hnRNP core protein A1)
          Length = 371

 Score = 32.3 bits (72), Expect = 0.51
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDR 428
           K+FVG +    +   L   FEQ G +E++E++ DR
Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR 139

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>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)|
           (RNA-binding protein BRUNOL-2) (Deadenylation factor
           CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein
           F41)
          Length = 486

 Score = 32.3 bits (72), Expect = 0.51
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +3

Query: 321 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDR 428
           +K+FVG +P T     L  LFEQ G+V  + ++ DR
Sbjct: 16  IKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDR 51

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>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP|
           A1) (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1)
          Length = 365

 Score = 32.0 bits (71), Expect = 0.67
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDR 428
           K+FVG +    +   L   FEQ G +E++E++ DR
Sbjct: 106 KIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDR 140

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>BOLL_MOUSE (Q924M5) Protein boule-like|
          Length = 281

 Score = 31.6 bits (70), Expect = 0.87
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDR 428
           ++FVG + F  +   L   F Q GSV+ V++V DR
Sbjct: 34  RIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR 68

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>NOP12_CANGA (Q6FUS6) Nucleolar protein 12|
          Length = 396

 Score = 31.6 bits (70), Expect = 0.87
 Identities = 17/36 (47%), Positives = 19/36 (52%)
 Frame = +3

Query: 327 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           VFVGNL F  D   L   F   GS+E V +V D  T
Sbjct: 230 VFVGNLDFEEDEESLWKHFGACGSIEYVRIVRDPKT 265

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>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 375

 Score = 31.6 bits (70), Expect = 0.87
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +3

Query: 327 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           VFVGNLP+ ++ + L   F   GS+  V +V + +T
Sbjct: 293 VFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLT 328



 Score = 31.2 bits (69), Expect = 1.1
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 327 VFVGNLPFTVDSAQLAGLFEQAGSVEMV 410
           VFVGNLP T +  +L   F++ G VE V
Sbjct: 191 VFVGNLPVTCNKKKLKSFFKEYGQVESV 218

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>NCBP2_ASHGO (Q754W7) Nuclear cap-binding protein subunit 2|
          Length = 218

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 327 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDR 428
           ++VGNL F     QL  LF + GS+E + +  DR
Sbjct: 48  IYVGNLSFYTSEEQLYELFSKCGSIEKIIMGLDR 81

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>FCA_ARATH (O04425) Flowering time control protein FCA|
          Length = 747

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +3

Query: 321 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           +K+FVG++P T    ++   FEQ G+V  V ++ D+ T
Sbjct: 120 VKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRT 157

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>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)|
          Length = 379

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           K+FVG +    +   L   FE+ G +E +EV+ DR +
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQS 163

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>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)|
          Length = 379

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           K+FVG +    +   L   FE+ G +E +EV+ DR +
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQS 163

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>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)|
          Length = 378

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           K+FVG +    +   L   FE+ G +E +EV+ DR +
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQS 163

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>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)|
           (hnRNP 48) (HRP48.1)
          Length = 421

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDR 428
           KVF+G LP  V    L   F + G V  V ++YD+
Sbjct: 97  KVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQ 131

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>NOP12_SCHPO (O13741) Nucleolar protein 12|
          Length = 438

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +3

Query: 327 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           VFVGNL F  +   L   F   GS++ V +V D  T
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKT 307

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>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1)
          Length = 295

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 327 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDR 428
           VFVG +   +D  ++   F + GSV+ V+++ DR
Sbjct: 42  VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR 75

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>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1) (DAZ homolog)
           (SPGY-like-autosomal)
          Length = 295

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 327 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDR 428
           VFVG +   +D  ++   F + GSV+ V+++ DR
Sbjct: 42  VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR 75

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>PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (Poly(A)-binding protein II) (PABII)
          Length = 166

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 327 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           V+VGN+ ++V   +L   F   GSV  V ++ D+ T
Sbjct: 57  VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFT 92

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>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark|
           homolog)
          Length = 359

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 321 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVV 419
           +K+F+GNLP      ++  LFEQ G V   +++
Sbjct: 2   VKLFIGNLPREATEQEIRSLFEQYGKVLECDII 34

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>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a) (Lark homolog) (mLark)
          Length = 361

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 321 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVV 419
           +K+F+GNLP      ++  LFEQ G V   +++
Sbjct: 2   VKLFIGNLPREATEQEIRSLFEQYGKVLECDII 34

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>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)|
           (RNA-binding protein 30) (RNA-binding motif protein 30)
           (Zinc-responsive protein ZD7)
          Length = 357

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 321 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVV 419
           +K+F+GNLP      ++  LFEQ G V   +++
Sbjct: 2   VKLFIGNLPREATEQEIRSLFEQYGKVLECDII 34

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>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)|
           (RNA-binding protein 30) (RNA-binding motif protein 30)
          Length = 357

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 321 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVV 419
           +K+F+GNLP      ++  LFEQ G V   +++
Sbjct: 2   VKLFIGNLPREATEQEIRSLFEQYGKVLECDII 34

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>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)|
           (RNA-binding protein 30) (RNA-binding motif protein 30)
          Length = 359

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 321 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVV 419
           +K+F+GNLP      ++  LFEQ G V   +++
Sbjct: 2   VKLFIGNLPREATEQEIRSLFEQYGKVLECDII 34

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>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1)
          Length = 298

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 327 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDR 428
           VFVG +   +D  ++   F + GSV+ V+++ DR
Sbjct: 42  VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR 75

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>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a) (Lark homolog) (hLark)
          Length = 364

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 321 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVV 419
           +K+F+GNLP      ++  LFEQ G V   +++
Sbjct: 2   VKLFIGNLPREATEQEIRSLFEQYGKVLECDII 34

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>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a)
          Length = 362

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 321 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVV 419
           +K+F+GNLP      ++  LFEQ G V   +++
Sbjct: 2   VKLFIGNLPREATEQEIRSLFEQYGKVLECDII 34

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>RBM14_PONPY (Q5RC41) RNA-binding protein 14 (RNA-binding motif protein 14)|
          Length = 669

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYD 425
           K+FVGN+     S +L  LFE+ G V   +VV D
Sbjct: 80  KIFVGNVSAACTSQELRSLFERRGRVIECDVVKD 113

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>RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif protein 14)|
          Length = 669

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYD 425
           K+FVGN+     S +L  LFE+ G V   +VV D
Sbjct: 80  KIFVGNVSAACTSQELRSLFERRGRVIECDVVKD 113

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>RBM14_HUMAN (Q96PK6) RNA-binding protein 14 (RNA-binding motif protein 14)|
           (RRM-containing coactivator activator/modulator)
           (Synaptotagmin-interacting protein) (SYT-interacting
           protein)
          Length = 669

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYD 425
           K+FVGN+     S +L  LFE+ G V   +VV D
Sbjct: 80  KIFVGNVSAACTSQELRSLFERRGRVIECDVVKD 113

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>RBM14_BOVIN (Q5EA36) RNA-binding protein 14 (RNA-binding motif protein 14)|
          Length = 669

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYD 425
           K+FVGN+     S +L  LFE+ G V   +VV D
Sbjct: 80  KIFVGNVSAACTSQELRSLFERRGRVIECDVVKD 113

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>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)|
          Length = 429

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 327 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYD 425
           ++  NLPF+   + L  LFE  G V   E+ YD
Sbjct: 353 IYCSNLPFSTAKSDLYDLFETIGKVNNAELRYD 385

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>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)|
          Length = 414

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 327 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           +FVG L +++D   L   FE  G V    V+Y+R T
Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGT 205

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>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /|
           hnRNP B1)
          Length = 341

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           K+FVG +    +   L   FE+ G ++ +E++ DR +
Sbjct: 101 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQS 137

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>SGN1_YEAST (P40561) RNA-binding protein SGN1|
          Length = 250

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 327 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           +FVGN+   V   Q+   F+  G ++ + ++YDR T
Sbjct: 66  IFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNT 101

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>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /|
           hnRNP B1)
          Length = 353

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           K+FVG +    +   L   FE+ G ++ +E++ DR +
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQS 149

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>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2|
           (hnRNP A3(B))
          Length = 385

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           K+FVG +    +   L   FE  G +E +EV+ DR +
Sbjct: 119 KIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQS 155

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>G3BP_MOUSE (P97855) Ras-GTPase-activating protein-binding protein 1 (EC|
           3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP
           SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII)
          Length = 465

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSV 401
           ++F+GNLP  VD ++L   F+  G+V
Sbjct: 339 QLFIGNLPHEVDKSELKDFFQNFGNV 364

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>G3BP_HUMAN (Q13283) Ras-GTPase-activating protein-binding protein 1 (EC|
           3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP
           SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII)
          Length = 466

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSV 401
           ++F+GNLP  VD ++L   F+  G+V
Sbjct: 341 QLFIGNLPHEVDKSELKDFFQSYGNV 366

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>NOP12_KLULA (Q6CKV6) Nucleolar protein 12|
          Length = 524

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +3

Query: 327 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           VFVGNL F      L   FE  G +E V ++ D  T
Sbjct: 361 VFVGNLDFEEVEESLWKHFEPCGDIEYVRIIRDSKT 396

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>NOP12_YEAST (Q08208) Nucleolar protein 12|
          Length = 459

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3

Query: 327 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           +FVGNL F      L   FE  G +E V ++ D  T
Sbjct: 281 IFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKT 316

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>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2|
          Length = 326

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 327 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           +FVG LP+ +    +  +F Q G +  + +V D+ T
Sbjct: 38  IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKT 73

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>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein|
           23) (RNA-binding region-containing protein 4) (Splicing
           factor SF2)
          Length = 439

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +3

Query: 321 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           ++++VG+L F +    L G+FE  G ++ + ++ D  T
Sbjct: 263 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDT 300

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>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in|
           azoospermia-associated protein 1)
          Length = 407

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYD 425
           K+FVG +P      +L   F++ G V  V ++YD
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYD 147

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>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in|
           azoospermia-associated protein 1)
          Length = 406

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYD 425
           K+FVG +P      +L   F++ G V  V ++YD
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYD 147

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>RNP1_CAEEL (Q10667) RNA-binding protein rnp-1|
          Length = 305

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVV 419
           K+FVGNLP  VDS +L  +F+    V   ++V
Sbjct: 4   KLFVGNLPDNVDSNKLKQVFQPFCKVTECDIV 35

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>RSD1_SCHPO (O13845) RNA-binding protein rsd1|
          Length = 604

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 327 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           VFV  L   + S +L   FEQAG V   ++V D+++
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKIS 277

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>TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein|
          Length = 348

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRM 431
           +VFVG L  +   +++  LFE  G+V  V + + R+
Sbjct: 45  RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRV 80

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>LARK_DROME (Q94901) RNA-binding protein lark|
          Length = 352

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVV 419
           K+F+GNL     + +L  LFE+ G+V   +VV
Sbjct: 8   KLFIGNLDEKTQATELRALFEKYGTVVECDVV 39

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>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)|
           (CeSF2/ASF)
          Length = 258

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEV 416
           KV+VGNLP  V   ++  +F + G ++ V++
Sbjct: 10  KVYVGNLPGDVREKEVEDIFHKYGRIKYVDI 40

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>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in|
           azoospermia-associated protein 1) (Proline-rich Vg1
           mRNA-binding protein)
          Length = 360

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYD 425
           K+FVG +P      +L   F + G V  V ++YD
Sbjct: 115 KIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYD 148

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>SXL_DROSU (Q24668) Protein sex-lethal|
          Length = 354

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 327 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           ++V NLP T+   QL  +F + GS+    ++ D++T
Sbjct: 215 LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLT 250

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>SXL_DROME (P19339) Protein sex-lethal|
          Length = 354

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 327 VFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           ++V NLP T+   QL  +F + GS+    ++ D++T
Sbjct: 213 LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLT 248

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>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2|
           (hnRNP A2(B))
          Length = 358

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           K+FVG +    +   L   FE+ G +E  E++ D+ +
Sbjct: 101 KLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQS 137

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>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1|
           (hnRNP A2(A))
          Length = 346

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +3

Query: 324 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMT 434
           K+FVG +    +   L   FE+ G ++ +E++ D+ +
Sbjct: 101 KLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQS 137


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,633,488
Number of Sequences: 219361
Number of extensions: 239423
Number of successful extensions: 1365
Number of sequences better than 10.0: 88
Number of HSP's better than 10.0 without gapping: 1294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1365
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result