ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast76f02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RGA_ARATH (Q9SLH3) DELLA protein RGA (Repressor on the ga1-3 mut... 28 7.8
2RGA1_BRACM (Q5BN23) DELLA protein RGA1 (RGA-like protein 1) (BrR... 28 7.8
3RGA2_BRACM (Q5BN22) DELLA protein RGA2 (RGA-like protein 2) (BrR... 28 7.8
4CD2AP_MOUSE (Q9JLQ0) CD2-associated protein (Mesenchym-to-epithe... 28 7.8
5GAI1_VITVI (Q8S4W7) DELLA protein GAI1 (Gibberellic acid-insensi... 28 7.8
6GAI_LYCES (Q7Y1B6) DELLA protein GAI (Gibberellic acid-insensiti... 28 7.8
7GAI_ARATH (Q9LQT8) DELLA protein GAI (Gibberellic acid-insensiti... 28 7.8

>RGA_ARATH (Q9SLH3) DELLA protein RGA (Repressor on the ga1-3 mutant)|
           (GAI-related sequence) (Restoration of growth on ammonia
           protein 1)
          Length = 587

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 56  QRHVYFTCPYCLFSHVTS 109
           Q H Y TCPY  F+H T+
Sbjct: 292 QMHFYETCPYLKFAHFTA 309



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>RGA1_BRACM (Q5BN23) DELLA protein RGA1 (RGA-like protein 1) (BrRGA1)|
          Length = 573

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 56  QRHVYFTCPYCLFSHVTS 109
           Q H Y TCPY  F+H T+
Sbjct: 279 QMHFYETCPYLKFAHFTA 296



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>RGA2_BRACM (Q5BN22) DELLA protein RGA2 (RGA-like protein 2) (BrRGA2)|
          Length = 579

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 56  QRHVYFTCPYCLFSHVTS 109
           Q H Y TCPY  F+H T+
Sbjct: 285 QMHFYETCPYLKFAHFTA 302



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>CD2AP_MOUSE (Q9JLQ0) CD2-associated protein (Mesenchym-to-epithelium transition|
           protein with SH3 domains 1) (METS-1)
          Length = 637

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 6   TAPTSPLPVPGDHTHPFNGT 65
           T PTSPLP PG+ + P  G+
Sbjct: 185 TGPTSPLPSPGNGSEPAPGS 204



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>GAI1_VITVI (Q8S4W7) DELLA protein GAI1 (Gibberellic acid-insensitive mutant|
           protein 1) (VvGAI1)
          Length = 590

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 56  QRHVYFTCPYCLFSHVTS 109
           Q H Y TCPY  F+H T+
Sbjct: 284 QMHFYETCPYLKFAHFTA 301



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>GAI_LYCES (Q7Y1B6) DELLA protein GAI (Gibberellic acid-insensitive mutant|
           protein)
          Length = 588

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 56  QRHVYFTCPYCLFSHVTS 109
           Q H Y TCPY  F+H T+
Sbjct: 269 QMHFYETCPYLKFAHFTA 286



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>GAI_ARATH (Q9LQT8) DELLA protein GAI (Gibberellic acid-insensitive mutant|
           protein) (Restoration of growth on ammonia protein 2)
          Length = 533

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 56  QRHVYFTCPYCLFSHVTS 109
           Q H Y TCPY  F+H T+
Sbjct: 240 QMHFYETCPYLKFAHFTA 257


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,295,250
Number of Sequences: 219361
Number of extensions: 386317
Number of successful extensions: 1141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1141
length of database: 80,573,946
effective HSP length: 73
effective length of database: 64,560,593
effective search space used: 1549454232
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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