ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast76f02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC130724.2| Oryza sativa (japonica cultivar-group) chromosome... 123 3e-25
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 123 3e-25
3dbj|AK071384.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 3e-25
4gb|BC109080.1| Homo sapiens Bruton agammaglobulinemia tyrosine k... 44 0.25
5gb|BC109079.1| Homo sapiens Bruton agammaglobulinemia tyrosine k... 44 0.25
6ref|XM_521179.1| PREDICTED: Pan troglodytes similar to Bruton ag... 44 0.25
7ref|NM_013482.1| Mus musculus Bruton agammaglobulinemia tyrosine... 44 0.25
8ref|NM_000061.1| Homo sapiens Bruton agammaglobulinemia tyrosine... 44 0.25
9ref|XM_856767.1| PREDICTED: Canis familiaris similar to Bruton a... 44 0.25
10ref|XM_856738.1| PREDICTED: Canis familiaris similar to Bruton a... 44 0.25
11ref|XM_856712.1| PREDICTED: Canis familiaris similar to Bruton a... 44 0.25
12ref|XM_856654.1| PREDICTED: Canis familiaris similar to Bruton a... 44 0.25
13ref|XM_856628.1| PREDICTED: Canis familiaris similar to Bruton a... 44 0.25
14ref|XM_856594.1| PREDICTED: Canis familiaris similar to Bruton a... 44 0.25
15ref|XM_549139.2| PREDICTED: Canis familiaris similar to Bruton a... 44 0.25
16gb|BC053392.1| Mus musculus Bruton agammaglobulinemia tyrosine k... 44 0.25
17ref|NM_001007798.1| Rattus norvegicus Bruton agammaglobulinemia ... 44 0.25
18dbj|AK057105.1| Homo sapiens cDNA FLJ32543 fis, clone SMINT20005... 44 0.25
19gb|AY335749.1| Synthetic construct Homo sapiens Bruton agammaglo... 44 0.25
20gb|AF153755.1|AF153755 Homo sapiens Bruton's tyrosine kinase mRN... 44 0.25
21gb|AY787790.1| Rattus norvegicus Bruton agammaglobulinemia tyros... 44 0.25
22gb|L29788.1|MUSBTKCDNA Mouse Bruton agammaglobulinemia tyrosine ... 44 0.25
23emb|X58957.1|HSATK H.sapiens atk mRNA for agammaglobulinaemia ty... 44 0.25
24gb|L10627.1|MUSEMBX Mus musculus mRNA sequence 44 0.25
25gb|L08967.1|MUSBPK Mus musculus B cell cytoplasmic tyrosine kina... 44 0.25
26ref|XM_509040.1| PREDICTED: Pan troglodytes myeloid/lymphoid or ... 40 3.8
27gb|AC018489.7| Drosophila melanogaster clone BACR19G19, complete... 40 3.8
28gb|AC022349.3| Drosophila melanogaster clone BACR33D04, complete... 40 3.8
29emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete ... 40 3.8
30dbj|AB189462.1| Rhodobacter sphaeroides f. sp. denitrificans tre... 40 3.8
31gb|AC007251.4| Homo sapiens BAC clone RP11-373G23 from 2, comple... 40 3.8
32gb|AC146754.3| Ornithorhynchus anatinus clone OA_Bb-256M12, comp... 40 3.8
33gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 3.8
34gb|AF466201.1| Sorghum bicolor clone SBTXS_0032H17 putative cyto... 40 3.8
35gb|AE003503.4| Drosophila melanogaster chromosome X, section 55 ... 40 3.8 
>gb|AC130724.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0409G01,
             complete sequence
          Length = 143263

 Score =  123 bits (62), Expect = 3e-25
 Identities = 107/122 (87%)
 Strand = Plus / Minus

                                                                         
Query: 159   ccggagatgacgacagagggtttggtgccgatcacgcgggactacctcgcgcgctactac 218
             ||||||||| |||| |||||  ||||||| ||||||||||  ||||||||||||||||||
Sbjct: 86379 ccggagatggcgacggaggggctggtgcccatcacgcgggcatacctcgcgcgctactac 86320

                                                                         
Query: 219   gacaagtacccgctgcccccgatccccgacggagtaaccgccctcgctgcccgcctccgc 278
             ||||||||||||||||||||| |||||||||  |  || |||||||| | ||||||||||
Sbjct: 86319 gacaagtacccgctgcccccgctccccgacgccgccacggccctcgccgaccgcctccgc 86260

               
Query: 279   gc 280
             ||
Sbjct: 86259 gc 86258
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  123 bits (62), Expect = 3e-25
 Identities = 107/122 (87%)
 Strand = Plus / Minus

                                                                            
Query: 159      ccggagatgacgacagagggtttggtgccgatcacgcgggactacctcgcgcgctactac 218
                ||||||||| |||| |||||  ||||||| ||||||||||  ||||||||||||||||||
Sbjct: 13715320 ccggagatggcgacggaggggctggtgcccatcacgcgggcatacctcgcgcgctactac 13715261

                                                                            
Query: 219      gacaagtacccgctgcccccgatccccgacggagtaaccgccctcgctgcccgcctccgc 278
                ||||||||||||||||||||| |||||||||  |  || |||||||| | ||||||||||
Sbjct: 13715260 gacaagtacccgctgcccccgctccccgacgccgccacggccctcgccgaccgcctccgc 13715201

                  
Query: 279      gc 280
                ||
Sbjct: 13715200 gc 13715199
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>dbj|AK071384.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093H10, full
           insert sequence
          Length = 1763

 Score =  123 bits (62), Expect = 3e-25
 Identities = 107/122 (87%)
 Strand = Plus / Plus

                                                                       
Query: 159 ccggagatgacgacagagggtttggtgccgatcacgcgggactacctcgcgcgctactac 218
           ||||||||| |||| |||||  ||||||| ||||||||||  ||||||||||||||||||
Sbjct: 136 ccggagatggcgacggaggggctggtgcccatcacgcgggcatacctcgcgcgctactac 195

                                                                       
Query: 219 gacaagtacccgctgcccccgatccccgacggagtaaccgccctcgctgcccgcctccgc 278
           ||||||||||||||||||||| |||||||||  |  || |||||||| | ||||||||||
Sbjct: 196 gacaagtacccgctgcccccgctccccgacgccgccacggccctcgccgaccgcctccgc 255

             
Query: 279 gc 280
           ||
Sbjct: 256 gc 257
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>gb|BC109080.1| Homo sapiens Bruton agammaglobulinemia tyrosine kinase, mRNA (cDNA
           clone MGC:126262 IMAGE:40034289), complete cds
          Length = 2407

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 81  cttactgcctcttctcccacgt 102
           ||||||||||||||||||||||
Sbjct: 281 cttactgcctcttctcccacgt 260
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>gb|BC109079.1| Homo sapiens Bruton agammaglobulinemia tyrosine kinase, mRNA (cDNA
           clone MGC:126261 IMAGE:40034287), complete cds
          Length = 2407

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 81  cttactgcctcttctcccacgt 102
           ||||||||||||||||||||||
Sbjct: 281 cttactgcctcttctcccacgt 260
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>ref|XM_521179.1| PREDICTED: Pan troglodytes similar to Bruton agammaglobulinemia
           tyrosine kinase (LOC465759), mRNA
          Length = 1622

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 81  cttactgcctcttctcccacgt 102
           ||||||||||||||||||||||
Sbjct: 156 cttactgcctcttctcccacgt 135
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>ref|NM_013482.1| Mus musculus Bruton agammaglobulinemia tyrosine kinase (Btk), mRNA
          Length = 2485

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 81  cttactgcctcttctcccacgt 102
           ||||||||||||||||||||||
Sbjct: 292 cttactgcctcttctcccacgt 271
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>ref|NM_000061.1| Homo sapiens Bruton agammaglobulinemia tyrosine kinase (BTK), mRNA
          Length = 2591

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 81  cttactgcctcttctcccacgt 102
           ||||||||||||||||||||||
Sbjct: 319 cttactgcctcttctcccacgt 298
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>ref|XM_856767.1| PREDICTED: Canis familiaris similar to Bruton agammaglobulinemia
           tyrosine kinase, transcript variant 9 (LOC492019), mRNA
          Length = 2502

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 81  cttactgcctcttctcccacgt 102
           ||||||||||||||||||||||
Sbjct: 314 cttactgcctcttctcccacgt 293
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>ref|XM_856738.1| PREDICTED: Canis familiaris similar to Bruton agammaglobulinemia
           tyrosine kinase, transcript variant 8 (LOC492019), mRNA
          Length = 2559

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 81  cttactgcctcttctcccacgt 102
           ||||||||||||||||||||||
Sbjct: 305 cttactgcctcttctcccacgt 284
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>ref|XM_856712.1| PREDICTED: Canis familiaris similar to Bruton agammaglobulinemia
           tyrosine kinase, transcript variant 7 (LOC492019), mRNA
          Length = 2496

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 81  cttactgcctcttctcccacgt 102
           ||||||||||||||||||||||
Sbjct: 305 cttactgcctcttctcccacgt 284
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>ref|XM_856654.1| PREDICTED: Canis familiaris similar to Bruton agammaglobulinemia
           tyrosine kinase, transcript variant 5 (LOC492019), mRNA
          Length = 2472

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 81  cttactgcctcttctcccacgt 102
           ||||||||||||||||||||||
Sbjct: 305 cttactgcctcttctcccacgt 284
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>ref|XM_856628.1| PREDICTED: Canis familiaris similar to Bruton agammaglobulinemia
           tyrosine kinase, transcript variant 4 (LOC492019), mRNA
          Length = 2283

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 81  cttactgcctcttctcccacgt 102
           ||||||||||||||||||||||
Sbjct: 314 cttactgcctcttctcccacgt 293
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>ref|XM_856594.1| PREDICTED: Canis familiaris similar to Bruton agammaglobulinemia
           tyrosine kinase, transcript variant 3 (LOC492019), mRNA
          Length = 1662

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 81  cttactgcctcttctcccacgt 102
           ||||||||||||||||||||||
Sbjct: 314 cttactgcctcttctcccacgt 293
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>ref|XM_549139.2| PREDICTED: Canis familiaris similar to Bruton agammaglobulinemia
           tyrosine kinase, transcript variant 1 (LOC492019), mRNA
          Length = 2565

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 81  cttactgcctcttctcccacgt 102
           ||||||||||||||||||||||
Sbjct: 314 cttactgcctcttctcccacgt 293
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>gb|BC053392.1| Mus musculus Bruton agammaglobulinemia tyrosine kinase, mRNA (cDNA
           clone MGC:60523 IMAGE:30075322), complete cds
          Length = 2493

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 81  cttactgcctcttctcccacgt 102
           ||||||||||||||||||||||
Sbjct: 252 cttactgcctcttctcccacgt 231
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>ref|NM_001007798.1| Rattus norvegicus Bruton agammaglobulinemia tyrosine kinase (Btk),
           mRNA
          Length = 1983

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 81  cttactgcctcttctcccacgt 102
           ||||||||||||||||||||||
Sbjct: 156 cttactgcctcttctcccacgt 135
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>dbj|AK057105.1| Homo sapiens cDNA FLJ32543 fis, clone SMINT2000538, highly similar
           to TYROSINE-PROTEIN KINASE BTK (EC 2.7.1.112)
          Length = 2202

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 81  cttactgcctcttctcccacgt 102
           ||||||||||||||||||||||
Sbjct: 468 cttactgcctcttctcccacgt 447
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>gb|AY335749.1| Synthetic construct Homo sapiens Bruton agammaglobulinemia tyrosine
           kinase (BTK) mRNA, partial cds
          Length = 1980

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 81  cttactgcctcttctcccacgt 102
           ||||||||||||||||||||||
Sbjct: 156 cttactgcctcttctcccacgt 135
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>gb|AF153755.1|AF153755 Homo sapiens Bruton's tyrosine kinase mRNA, partial cds
          Length = 351

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 81  cttactgcctcttctcccacgt 102
           ||||||||||||||||||||||
Sbjct: 156 cttactgcctcttctcccacgt 135
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>gb|AY787790.1| Rattus norvegicus Bruton agammaglobulinemia tyrosine kinase (Btk)
           mRNA, complete cds
          Length = 1983

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 81  cttactgcctcttctcccacgt 102
           ||||||||||||||||||||||
Sbjct: 156 cttactgcctcttctcccacgt 135
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>gb|L29788.1|MUSBTKCDNA Mouse Bruton agammaglobulinemia tyrosine kinase (Btk) mRNA,
           complete cds
          Length = 2468

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 81  cttactgcctcttctcccacgt 102
           ||||||||||||||||||||||
Sbjct: 288 cttactgcctcttctcccacgt 267
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>emb|X58957.1|HSATK H.sapiens atk mRNA for agammaglobulinaemia tyrosine kinase
          Length = 2560

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 81  cttactgcctcttctcccacgt 102
           ||||||||||||||||||||||
Sbjct: 288 cttactgcctcttctcccacgt 267
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>gb|L10627.1|MUSEMBX Mus musculus mRNA sequence
          Length = 2546

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 81  cttactgcctcttctcccacgt 102
           ||||||||||||||||||||||
Sbjct: 321 cttactgcctcttctcccacgt 300
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>gb|L08967.1|MUSBPK Mus musculus B cell cytoplasmic tyrosine kinase (BPK) mRNA,
           complete cds
          Length = 2485

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 81  cttactgcctcttctcccacgt 102
           ||||||||||||||||||||||
Sbjct: 292 cttactgcctcttctcccacgt 271
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>ref|XM_509040.1| PREDICTED: Pan troglodytes myeloid/lymphoid or mixed-lineage leukemia
            2 (LOC451873), mRNA
          Length = 15939

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 93   tctcccacgtcacctccacc 112
            ||||||||||||||||||||
Sbjct: 2248 tctcccacgtcacctccacc 2267
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>gb|AC018489.7| Drosophila melanogaster clone BACR19G19, complete sequence
          Length = 179077

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 140    ccgctctccaatcttctcaccggagatg 167
              |||||||||||||||| |||| ||||||
Sbjct: 133858 ccgctctccaatcttcgcaccagagatg 133831
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>gb|AC022349.3| Drosophila melanogaster clone BACR33D04, complete sequence
          Length = 177576

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 140   ccgctctccaatcttctcaccggagatg 167
             |||||||||||||||| |||| ||||||
Sbjct: 60222 ccgctctccaatcttcgcaccagagatg 60195
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>emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete genome; segment 9/29
          Length = 300800

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 256    ccgccctcgctgcccgcctc 275
              ||||||||||||||||||||
Sbjct: 237971 ccgccctcgctgcccgcctc 237952
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>dbj|AB189462.1| Rhodobacter sphaeroides f. sp. denitrificans treS gene for trehalose
            synthase, complete cds
          Length = 3309

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 265  ctgcccgcctccgcgctctg 284
            ||||||||||||||||||||
Sbjct: 1969 ctgcccgcctccgcgctctg 1988
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>gb|AC007251.4| Homo sapiens BAC clone RP11-373G23 from 2, complete sequence
          Length = 180964

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 89    ctcttctcccacgtcacctc 108
             ||||||||||||||||||||
Sbjct: 94076 ctcttctcccacgtcacctc 94057
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>gb|AC146754.3| Ornithorhynchus anatinus clone OA_Bb-256M12, complete sequence
          Length = 45326

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 80    ccttactgcctcttctcccacgtcacct 107
             |||||| |||||||||||||| ||||||
Sbjct: 12724 ccttacagcctcttctcccacttcacct 12697
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 264     gctgcccgcctccgcgctct 283
               ||||||||||||||||||||
Sbjct: 1578232 gctgcccgcctccgcgctct 1578251
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>gb|AF466201.1| Sorghum bicolor clone SBTXS_0032H17 putative cytochrome P450-like
             protein, putative DNA-binding protein homolog,
             TATA-binding protein, hypothetical protein M3E9.200,
             3-glucanase, K-exchanger-like protein, small heat
             shock-like protein, methionine synthase protein, putative
             far-red impaired response protein, and putative vegetative
             storage protein genes, complete cds
          Length = 100773

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 259   ccctcgctgcccgcctccgc 278
             ||||||||||||||||||||
Sbjct: 42028 ccctcgctgcccgcctccgc 42009
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>gb|AE003503.4| Drosophila melanogaster chromosome X, section 55 of 74 of the complete
              sequence
          Length = 300468

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 140    ccgctctccaatcttctcaccggagatg 167
              |||||||||||||||| |||| ||||||
Sbjct: 198167 ccgctctccaatcttcgcaccagagatg 198194


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,603,182
Number of Sequences: 3902068
Number of extensions: 1603182
Number of successful extensions: 31640
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31520
Number of HSP's gapped (non-prelim): 117
length of query: 294
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 272
effective length of database: 17,147,199,772
effective search space: 4664038337984
effective search space used: 4664038337984
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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