ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast76f01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_469909.1| Oryza sativa (japonica cultivar-group), mRNA 131 2e-27
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 131 2e-27
3gb|AC107207.9| Oryza sativa chromosome 3 BAC OSJNBb0106M04 genom... 131 2e-27
4gb|AC099043.6| Oryza sativa chromosome 3 BAC OSJNBa0079B15 genom... 131 2e-27
5dbj|AB116527.1| Oryza sativa (japonica cultivar-group) aos mRNA ... 131 2e-27
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 131 2e-27
7dbj|AK068620.1| Oryza sativa (japonica cultivar-group) cDNA clon... 131 2e-27
8dbj|AK066137.1| Oryza sativa (japonica cultivar-group) cDNA clon... 131 2e-27
9gb|AF385748.1| Chlamydomonas reinhardtii channelopsin-1 precurso... 44 0.29
10gb|AF508967.1| Chlamydomonas reinhardtii sensory opsin A (CSOA) ... 44 0.29
11gb|AF508965.1| Chlamydomonas reinhardtii sensory opsin A (CSOA) ... 44 0.29
12dbj|AB058890.1| Chlamydomonas reinhardtii acop1 mRNA for archaea... 44 0.29
13ref|NM_197355.1| Oryza sativa (japonica cultivar-group) putative... 42 1.1
14gb|AC132491.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.1
15gb|AC130611.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.1
16ref|XM_959511.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.1
17ref|XM_329266.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.1
18gb|AC025296.10| Oryza sativa chromosome 10 BAC OSJNBa0076F20 gen... 42 1.1
19dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
20dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
21dbj|AK059055.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.1
22gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.1
23ref|XM_469438.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.5
24ref|XM_478511.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.5
25gb|AC091670.7| Oryza sativa (japonica cultivar-group) chromosome... 40 4.5
26gb|AC120986.2| Oryza sativa (japonica cultivar-group) chromosome... 40 4.5
27ref|XM_368145.1| Magnaporthe grisea 70-15 chromosome VI hypothet... 40 4.5
28ref|XM_322249.1| Neurospora crassa OR74A hypothetical protein (N... 40 4.5
29ref|XM_951584.1| Neurospora crassa OR74A hypothetical protein (N... 40 4.5
30gb|AC133334.8| Oryza sativa chromosome 3 BAC OSJNBa0004L11 genom... 40 4.5
31gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 40 4.5
32gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 40 4.5
33gb|AC068924.11| Oryza sativa chromosome 10 BAC OSJNBa0026L12 gen... 40 4.5
34ref|XM_928049.1| PREDICTED: Homo sapiens hypothetical protein LO... 40 4.5
35gb|AC018692.9| Homo sapiens BAC clone RP11-555K2 from 4, complet... 40 4.5
36gb|AF381614.1|AF381614 Magnaporthe grisea clone BAC 14F6 gene se... 40 4.5
37gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 40 4.5
38ref|XM_391958.2| PREDICTED: Apis mellifera similar to GA14769-PA... 40 4.5
39dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
40gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic ... 40 4.5
41gb|AC133007.4| Oryza sativa chromosome 3 BAC OSJNBa0094J08 genom... 40 4.5
42gb|AE004625.1| Pseudomonas aeruginosa PAO1, section 186 of 529 o... 40 4.5
43gb|AC097230.3| Sus scrofa clone RP44-254G1, complete sequence 40 4.5
44gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome 40 4.5
45dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 4.5
46dbj|AB121697.1| Burkholderia glumae gyrA gene for GyrA protein, ... 40 4.5
47dbj|AB121696.1| Burkholderia glumae gyrA gene for GyrA protein, ... 40 4.5
48dbj|AB121695.1| Burkholderia glumae gyrA gene for GyrA protein, ... 40 4.5
49dbj|AB121694.1| Burkholderia glumae gyrA gene for GyrA protein, ... 40 4.5
50dbj|AB121693.1| Burkholderia glumae gyrA gene for GyrA protein, ... 40 4.5
51emb|BX294384.19| Mouse DNA sequence from clone RP24-230A23 on ch... 40 4.5
52dbj|AP004674.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
53dbj|AK120790.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.5
54dbj|AK119853.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.5
55dbj|AK119596.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.5
56emb|AJ337621.1|HSA337621 Homo sapiens genomic sequence surroundi... 40 4.5
57emb|AJ337133.1|HSA337133 Homo sapiens genomic sequence surroundi... 40 4.5
58dbj|AK101103.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.5
59emb|AJ331775.1|HSA331775 Homo sapiens genomic sequence surroundi... 40 4.5
60gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 4.5
61gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 4.5
62gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 40 4.5
63emb|AJ001140.1|AFJ001140 Avena fatua mRNA for VIVIPAROUS 1 homol... 40 4.5 
>ref|XM_469909.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1682

 Score =  131 bits (66), Expect = 2e-27
 Identities = 129/151 (85%)
 Strand = Plus / Plus

                                                                       
Query: 183 ggcggcagacgcgggcgtccgcgtccgcctccgcgacggaccggcacgaggtgctgncgc 242
           ||||||||||||||||||| ||||| || || |||||||||||||| |||||| || |||
Sbjct: 62  ggcggcagacgcgggcgtcggcgtcggcgtcggcgacggaccggcaggaggtggtgtcgc 121

                                                                       
Query: 243 cgaagcggcggctgccgctgcgcanggtgccgggcgagcacggcccgccggngctaggcg 302
           |||||||||||||||||||||| | ||||||||| ||  |||||||||||| | | ||||
Sbjct: 122 cgaagcggcggctgccgctgcggaaggtgccgggggactacggcccgccggtggtgggcg 181

                                          
Query: 303 cgctcaaggaccgtctcgagtacttctacgg 333
           || ||  |||| |   |||||||||||||||
Sbjct: 182 cgatccgggacaggtacgagtacttctacgg 212
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  131 bits (66), Expect = 2e-27
 Identities = 129/151 (85%)
 Strand = Plus / Minus

                                                                            
Query: 183      ggcggcagacgcgggcgtccgcgtccgcctccgcgacggaccggcacgaggtgctgncgc 242
                ||||||||||||||||||| ||||| || || |||||||||||||| |||||| || |||
Sbjct: 31462786 ggcggcagacgcgggcgtcggcgtcggcgtcggcgacggaccggcaggaggtggtgtcgc 31462727

                                                                            
Query: 243      cgaagcggcggctgccgctgcgcanggtgccgggcgagcacggcccgccggngctaggcg 302
                |||||||||||||||||||||| | ||||||||| ||  |||||||||||| | | ||||
Sbjct: 31462726 cgaagcggcggctgccgctgcggaaggtgccgggggactacggcccgccggtggtgggcg 31462667

                                               
Query: 303      cgctcaaggaccgtctcgagtacttctacgg 333
                || ||  |||| |   |||||||||||||||
Sbjct: 31462666 cgatccgggacaggtacgagtacttctacgg 31462636



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 197      gcgtccgcgtccgcctccgc 216
                ||||||||||||||||||||
Sbjct: 34042614 gcgtccgcgtccgcctccgc 34042595



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 38       accaccaccagcagccgccg 57
                ||||||||||||||||||||
Sbjct: 27958937 accaccaccagcagccgccg 27958956
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>gb|AC107207.9| Oryza sativa chromosome 3 BAC OSJNBb0106M04 genomic sequence, complete
              sequence
          Length = 133449

 Score =  131 bits (66), Expect = 2e-27
 Identities = 129/151 (85%)
 Strand = Plus / Plus

                                                                          
Query: 183    ggcggcagacgcgggcgtccgcgtccgcctccgcgacggaccggcacgaggtgctgncgc 242
              ||||||||||||||||||| ||||| || || |||||||||||||| |||||| || |||
Sbjct: 129810 ggcggcagacgcgggcgtcggcgtcggcgtcggcgacggaccggcaggaggtggtgtcgc 129869

                                                                          
Query: 243    cgaagcggcggctgccgctgcgcanggtgccgggcgagcacggcccgccggngctaggcg 302
              |||||||||||||||||||||| | ||||||||| ||  |||||||||||| | | ||||
Sbjct: 129870 cgaagcggcggctgccgctgcggaaggtgccgggggactacggcccgccggtggtgggcg 129929

                                             
Query: 303    cgctcaaggaccgtctcgagtacttctacgg 333
              || ||  |||| |   |||||||||||||||
Sbjct: 129930 cgatccgggacaggtacgagtacttctacgg 129960
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>gb|AC099043.6| Oryza sativa chromosome 3 BAC OSJNBa0079B15 genomic sequence, complete
             sequence
          Length = 159091

 Score =  131 bits (66), Expect = 2e-27
 Identities = 129/151 (85%)
 Strand = Plus / Plus

                                                                         
Query: 183   ggcggcagacgcgggcgtccgcgtccgcctccgcgacggaccggcacgaggtgctgncgc 242
             ||||||||||||||||||| ||||| || || |||||||||||||| |||||| || |||
Sbjct: 33014 ggcggcagacgcgggcgtcggcgtcggcgtcggcgacggaccggcaggaggtggtgtcgc 33073

                                                                         
Query: 243   cgaagcggcggctgccgctgcgcanggtgccgggcgagcacggcccgccggngctaggcg 302
             |||||||||||||||||||||| | ||||||||| ||  |||||||||||| | | ||||
Sbjct: 33074 cgaagcggcggctgccgctgcggaaggtgccgggggactacggcccgccggtggtgggcg 33133

                                            
Query: 303   cgctcaaggaccgtctcgagtacttctacgg 333
             || ||  |||| |   |||||||||||||||
Sbjct: 33134 cgatccgggacaggtacgagtacttctacgg 33164
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>dbj|AB116527.1| Oryza sativa (japonica cultivar-group) aos mRNA for allene oxide
           synthase, complete cds
          Length = 1918

 Score =  131 bits (66), Expect = 2e-27
 Identities = 129/151 (85%)
 Strand = Plus / Plus

                                                                       
Query: 183 ggcggcagacgcgggcgtccgcgtccgcctccgcgacggaccggcacgaggtgctgncgc 242
           ||||||||||||||||||| ||||| || || |||||||||||||| |||||| || |||
Sbjct: 185 ggcggcagacgcgggcgtcggcgtcggcgtcggcgacggaccggcaggaggtggtgtcgc 244

                                                                       
Query: 243 cgaagcggcggctgccgctgcgcanggtgccgggcgagcacggcccgccggngctaggcg 302
           |||||||||||||||||||||| | ||||||||| ||  |||||||||||| | | ||||
Sbjct: 245 cgaagcggcggctgccgctgcggaaggtgccgggggactacggcccgccggtggtgggcg 304

                                          
Query: 303 cgctcaaggaccgtctcgagtacttctacgg 333
           || ||  |||| |   |||||||||||||||
Sbjct: 305 cgatccgggacaggtacgagtacttctacgg 335
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  131 bits (66), Expect = 2e-27
 Identities = 129/151 (85%)
 Strand = Plus / Minus

                                                                            
Query: 183      ggcggcagacgcgggcgtccgcgtccgcctccgcgacggaccggcacgaggtgctgncgc 242
                ||||||||||||||||||| ||||| || || |||||||||||||| |||||| || |||
Sbjct: 31553302 ggcggcagacgcgggcgtcggcgtcggcgtcggcgacggaccggcaggaggtggtgtcgc 31553243

                                                                            
Query: 243      cgaagcggcggctgccgctgcgcanggtgccgggcgagcacggcccgccggngctaggcg 302
                |||||||||||||||||||||| | ||||||||| ||  |||||||||||| | | ||||
Sbjct: 31553242 cgaagcggcggctgccgctgcggaaggtgccgggggactacggcccgccggtggtgggcg 31553183

                                               
Query: 303      cgctcaaggaccgtctcgagtacttctacgg 333
                || ||  |||| |   |||||||||||||||
Sbjct: 31553182 cgatccgggacaggtacgagtacttctacgg 31553152



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 197      gcgtccgcgtccgcctccgc 216
                ||||||||||||||||||||
Sbjct: 34133086 gcgtccgcgtccgcctccgc 34133067



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 38       accaccaccagcagccgccg 57
                ||||||||||||||||||||
Sbjct: 28050261 accaccaccagcagccgccg 28050280
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>dbj|AK068620.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013153K19, full
           insert sequence
          Length = 1997

 Score =  131 bits (66), Expect = 2e-27
 Identities = 129/151 (85%)
 Strand = Plus / Plus

                                                                       
Query: 183 ggcggcagacgcgggcgtccgcgtccgcctccgcgacggaccggcacgaggtgctgncgc 242
           ||||||||||||||||||| ||||| || || |||||||||||||| |||||| || |||
Sbjct: 279 ggcggcagacgcgggcgtcggcgtcggcgtcggcgacggaccggcaggaggtggtgtcgc 338

                                                                       
Query: 243 cgaagcggcggctgccgctgcgcanggtgccgggcgagcacggcccgccggngctaggcg 302
           |||||||||||||||||||||| | ||||||||| ||  |||||||||||| | | ||||
Sbjct: 339 cgaagcggcggctgccgctgcggaaggtgccgggggactacggcccgccggtggtgggcg 398

                                          
Query: 303 cgctcaaggaccgtctcgagtacttctacgg 333
           || ||  |||| |   |||||||||||||||
Sbjct: 399 cgatccgggacaggtacgagtacttctacgg 429
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>dbj|AK066137.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013054B10, full
            insert sequence
          Length = 3951

 Score =  131 bits (66), Expect = 2e-27
 Identities = 129/151 (85%)
 Strand = Plus / Minus

                                                                        
Query: 183  ggcggcagacgcgggcgtccgcgtccgcctccgcgacggaccggcacgaggtgctgncgc 242
            ||||||||||||||||||| ||||| || || |||||||||||||| |||||| || |||
Sbjct: 3193 ggcggcagacgcgggcgtcggcgtcggcgtcggcgacggaccggcaggaggtggtgtcgc 3134

                                                                        
Query: 243  cgaagcggcggctgccgctgcgcanggtgccgggcgagcacggcccgccggngctaggcg 302
            |||||||||||||||||||||| | ||||||||| ||  |||||||||||| | | ||||
Sbjct: 3133 cgaagcggcggctgccgctgcggaaggtgccgggggactacggcccgccggtggtgggcg 3074

                                           
Query: 303  cgctcaaggaccgtctcgagtacttctacgg 333
            || ||  |||| |   |||||||||||||||
Sbjct: 3073 cgatccgggacaggtacgagtacttctacgg 3043
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>gb|AF385748.1| Chlamydomonas reinhardtii channelopsin-1 precursor, mRNA, complete
            cds
          Length = 2236

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 155  ttctccgcgccgagcgcgggcaccag 180
            ||||||||||| ||||||||||||||
Sbjct: 1470 ttctccgcgcccagcgcgggcaccag 1445
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>gb|AF508967.1| Chlamydomonas reinhardtii sensory opsin A (CSOA) gene, complete cds
          Length = 6857

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 155  ttctccgcgccgagcgcgggcaccag 180
            ||||||||||| ||||||||||||||
Sbjct: 3931 ttctccgcgcccagcgcgggcaccag 3906
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>gb|AF508965.1| Chlamydomonas reinhardtii sensory opsin A (CSOA) mRNA, complete cds
          Length = 3763

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 155  ttctccgcgccgagcgcgggcaccag 180
            ||||||||||| ||||||||||||||
Sbjct: 1461 ttctccgcgcccagcgcgggcaccag 1436
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>dbj|AB058890.1| Chlamydomonas reinhardtii acop1 mRNA for archaeal-type opsin 1,
            complete cds
          Length = 3773

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 155  ttctccgcgccgagcgcgggcaccag 180
            ||||||||||| ||||||||||||||
Sbjct: 1464 ttctccgcgcccagcgcgggcaccag 1439
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>ref|NM_197355.1| Oryza sativa (japonica cultivar-group) putative transcription factor
            (OSJNBa0076F20.5), mRNA
          Length = 3478

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 37   caccaccaccagcagccgccg 57
            |||||||||||||||||||||
Sbjct: 2305 caccaccaccagcagccgccg 2325
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>gb|AC132491.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0599F04,
              complete sequence
          Length = 169073

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 37     caccaccaccagcagccgccg 57
              |||||||||||||||||||||
Sbjct: 150261 caccaccaccagcagccgccg 150281
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>gb|AC130611.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0483D07,
             complete sequence
          Length = 147122

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 37    caccaccaccagcagccgccg 57
             |||||||||||||||||||||
Sbjct: 46223 caccaccaccagcagccgccg 46243
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>ref|XM_959511.1| Neurospora crassa OR74A hypothetical protein (NCU02077.1) partial
            mRNA
          Length = 3030

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 37   caccaccaccagcagccgccg 57
            |||||||||||||||||||||
Sbjct: 2782 caccaccaccagcagccgccg 2762
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>ref|XM_329266.1| Neurospora crassa OR74A hypothetical protein (NCU02077.1) partial
            mRNA
          Length = 3030

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 37   caccaccaccagcagccgccg 57
            |||||||||||||||||||||
Sbjct: 2782 caccaccaccagcagccgccg 2762
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>gb|AC025296.10| Oryza sativa chromosome 10 BAC OSJNBa0076F20 genomic sequence, complete
             sequence
          Length = 165394

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 37    caccaccaccagcagccgccg 57
             |||||||||||||||||||||
Sbjct: 38882 caccaccaccagcagccgccg 38862
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 37       caccaccaccagcagccgccg 57
                |||||||||||||||||||||
Sbjct: 19411016 caccaccaccagcagccgccg 19410996



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 198      cgtccgcgtccgcctccgcgacggaccg 225
                |||||||| ||||||||||||| |||||
Sbjct: 19231266 cgtccgcgaccgcctccgcgaccgaccg 19231239
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 37       caccaccaccagcagccgccg 57
                |||||||||||||||||||||
Sbjct: 25633854 caccaccaccagcagccgccg 25633874



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 197      gcgtccgcgtccgcctccgc 216
                ||||||||||||||||||||
Sbjct: 28060891 gcgtccgcgtccgcctccgc 28060872
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>dbj|AK059055.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-F02, full
           insert sequence
          Length = 1418

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 37  caccaccaccagcagccgccg 57
           |||||||||||||||||||||
Sbjct: 573 caccaccaccagcagccgccg 593
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 37       caccaccaccagcagccgccg 57
                |||||||||||||||||||||
Sbjct: 19422292 caccaccaccagcagccgccg 19422272



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 198      cgtccgcgtccgcctccgcgacggaccg 225
                |||||||| ||||||||||||| |||||
Sbjct: 19242542 cgtccgcgaccgcctccgcgaccgaccg 19242515
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>ref|XM_469438.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2080

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 38  accaccaccagcagccgccg 57
           ||||||||||||||||||||
Sbjct: 151 accaccaccagcagccgccg 132
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>ref|XM_478511.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 306

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 198 cgtccgcgtccgcctccgcgacggaccg 225
           |||||||| ||||||||||||| |||||
Sbjct: 265 cgtccgcgaccgcctccgcgaccgaccg 238
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>gb|AC091670.7| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1212_C08
             map R2847, complete sequence
          Length = 100918

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 38    accaccaccagcagccgccg 57
             ||||||||||||||||||||
Sbjct: 94665 accaccaccagcagccgccg 94684
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>gb|AC120986.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1781_H11,
              complete sequence
          Length = 204649

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 197    gcgtccgcgtccgcctccgc 216
              ||||||||||||||||||||
Sbjct: 141056 gcgtccgcgtccgcctccgc 141037
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>ref|XM_368145.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein
           (MG01099.4) partial mRNA
          Length = 864

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 38  accaccaccagcagccgccg 57
           ||||||||||||||||||||
Sbjct: 327 accaccaccagcagccgccg 308
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>ref|XM_322249.1| Neurospora crassa OR74A hypothetical protein (NCU00164.1) partial
            mRNA
          Length = 3132

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 240  cgccgaagcggcggctgccgctgc 263
            ||||||||||||||| ||||||||
Sbjct: 2148 cgccgaagcggcggcggccgctgc 2171
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>ref|XM_951584.1| Neurospora crassa OR74A hypothetical protein (NCU00164.1) partial
            mRNA
          Length = 3132

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 240  cgccgaagcggcggctgccgctgc 263
            ||||||||||||||| ||||||||
Sbjct: 2148 cgccgaagcggcggcggccgctgc 2171
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>gb|AC133334.8| Oryza sativa chromosome 3 BAC OSJNBa0004L11 genomic sequence, complete
             sequence
          Length = 133889

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 38    accaccaccagcagccgccg 57
             ||||||||||||||||||||
Sbjct: 66089 accaccaccagcagccgccg 66070
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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 159     ccgcgccgagcgcgggcaccagacggcggcag 190
               ||||||||||  || |||||||||||||||||
Sbjct: 3068197 ccgcgccgagttcgcgcaccagacggcggcag 3068166
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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 158   tccgcgccgagcgcgggcac 177
             ||||||||||||||||||||
Sbjct: 49033 tccgcgccgagcgcgggcac 49052
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>gb|AC068924.11| Oryza sativa chromosome 10 BAC OSJNBa0026L12 genomic sequence, complete
              sequence
          Length = 152172

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 198    cgtccgcgtccgcctccgcgacggaccg 225
              |||||||| ||||||||||||| |||||
Sbjct: 145115 cgtccgcgaccgcctccgcgaccgaccg 145142
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>ref|XM_928049.1| PREDICTED: Homo sapiens hypothetical protein LOC644973 (LOC644973),
           mRNA
          Length = 2650

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 234 tgctgncgccgaagcggcggctg 256
           ||||| |||||||||||||||||
Sbjct: 115 tgctgccgccgaagcggcggctg 93
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>gb|AC018692.9| Homo sapiens BAC clone RP11-555K2 from 4, complete sequence
          Length = 189789

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 234   tgctgncgccgaagcggcggctg 256
             ||||| |||||||||||||||||
Sbjct: 82928 tgctgccgccgaagcggcggctg 82950
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>gb|AF381614.1|AF381614 Magnaporthe grisea clone BAC 14F6 gene sequence
          Length = 110467

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 38    accaccaccagcagccgccg 57
             ||||||||||||||||||||
Sbjct: 37680 accaccaccagcagccgccg 37699
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>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 192     cgcgggcgtccgcgtccgcc 211
               ||||||||||||||||||||
Sbjct: 2059037 cgcgggcgtccgcgtccgcc 2059018
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>ref|XM_391958.2| PREDICTED: Apis mellifera similar to GA14769-PA (LOC408411), mRNA
          Length = 1775

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 240 cgccgaagcggcggctgccgctgc 263
           |||||||||||| |||||||||||
Sbjct: 963 cgccgaagcggccgctgccgctgc 940
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 198      cgtccgcgtccgcctccgcgacggaccg 225
                |||||||| ||||||||||||| |||||
Sbjct: 20667614 cgtccgcgaccgcctccgcgaccgaccg 20667587
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>gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete
            sequence
          Length = 163828

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 197  gcgtccgcgtccgcctccgc 216
            ||||||||||||||||||||
Sbjct: 6426 gcgtccgcgtccgcctccgc 6407
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>gb|AC133007.4| Oryza sativa chromosome 3 BAC OSJNBa0094J08 genomic sequence, complete
             sequence
          Length = 172337

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 197   gcgtccgcgtccgcctccgc 216
             ||||||||||||||||||||
Sbjct: 15077 gcgtccgcgtccgcctccgc 15096
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>gb|AE004625.1| Pseudomonas aeruginosa PAO1, section 186 of 529 of the complete genome
          Length = 11871

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    ccaccaccagcagccgccgt 58
             ||||||||||||||||||||
Sbjct: 10194 ccaccaccagcagccgccgt 10175
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>gb|AC097230.3| Sus scrofa clone RP44-254G1, complete sequence
          Length = 162289

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 94     cttccctccgtagctctcgc 113
              ||||||||||||||||||||
Sbjct: 139707 cttccctccgtagctctcgc 139688
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>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 154    cttctccgcgccgagcgcgggcac 177
              ||||||||||||||||||| ||||
Sbjct: 232847 cttctccgcgccgagcgcgagcac 232824
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 153     ccttctccgcgccgagcgcg 172
               ||||||||||||||||||||
Sbjct: 6264019 ccttctccgcgccgagcgcg 6264038
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>dbj|AB121697.1| Burkholderia glumae gyrA gene for GyrA protein, complete cds,
            isolate:M3
          Length = 2610

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 199  gtccgcgtccgcctccgcga 218
            ||||||||||||||||||||
Sbjct: 2565 gtccgcgtccgcctccgcga 2546
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>dbj|AB121696.1| Burkholderia glumae gyrA gene for GyrA protein, complete cds,
            isolate:FU13
          Length = 2610

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 199  gtccgcgtccgcctccgcga 218
            ||||||||||||||||||||
Sbjct: 2565 gtccgcgtccgcctccgcga 2546
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>dbj|AB121695.1| Burkholderia glumae gyrA gene for GyrA protein, complete cds,
            isolate:Pg-15
          Length = 2610

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 199  gtccgcgtccgcctccgcga 218
            ||||||||||||||||||||
Sbjct: 2565 gtccgcgtccgcctccgcga 2546
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>dbj|AB121694.1| Burkholderia glumae gyrA gene for GyrA protein, complete cds,
            isolate:Pg-7
          Length = 2610

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 199  gtccgcgtccgcctccgcga 218
            ||||||||||||||||||||
Sbjct: 2565 gtccgcgtccgcctccgcga 2546
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>dbj|AB121693.1| Burkholderia glumae gyrA gene for GyrA protein, complete cds,
            isolate:Pg-10
          Length = 2610

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 199  gtccgcgtccgcctccgcga 218
            ||||||||||||||||||||
Sbjct: 2565 gtccgcgtccgcctccgcga 2546
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>emb|BX294384.19| Mouse DNA sequence from clone RP24-230A23 on chromosome X, complete
              sequence
          Length = 133152

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 37     caccaccaccagcagccgcc 56
              ||||||||||||||||||||
Sbjct: 111090 caccaccaccagcagccgcc 111109
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>dbj|AP004674.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0681F05
          Length = 144741

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 198   cgtccgcgtccgcctccgcgacggaccg 225
             |||||||| ||||||||||||| |||||
Sbjct: 20364 cgtccgcgaccgcctccgcgaccgaccg 20337
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>dbj|AK120790.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023011K21, full
           insert sequence
          Length = 2082

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 38  accaccaccagcagccgccg 57
           ||||||||||||||||||||
Sbjct: 153 accaccaccagcagccgccg 134
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>dbj|AK119853.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-178-G03, full
            insert sequence
          Length = 3335

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 37   caccaccaccagcagccgcc 56
            ||||||||||||||||||||
Sbjct: 2905 caccaccaccagcagccgcc 2924
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>dbj|AK119596.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-D11, full
           insert sequence
          Length = 2378

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 197 gcgtccgcgtccgcctccgc 216
           ||||||||||||||||||||
Sbjct: 19  gcgtccgcgtccgcctccgc 38
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>emb|AJ337621.1|HSA337621 Homo sapiens genomic sequence surrounding NotI site, clone
           NL4-CG14RS
          Length = 732

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 234 tgctgncgccgaagcggcggctg 256
           ||||| |||||||||||||||||
Sbjct: 17  tgctgtcgccgaagcggcggctg 39
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>emb|AJ337133.1|HSA337133 Homo sapiens genomic sequence surrounding NotI site, clone
           NL4-AP10R
          Length = 758

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 234 tgctgncgccgaagcggcggctg 256
           ||||| |||||||||||||||||
Sbjct: 17  tgctgccgccgaagcggcggctg 39
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>dbj|AK101103.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033025C07, full
           insert sequence
          Length = 2356

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 197 gcgtccgcgtccgcctccgc 216
           ||||||||||||||||||||
Sbjct: 20  gcgtccgcgtccgcctccgc 39
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>emb|AJ331775.1|HSA331775 Homo sapiens genomic sequence surrounding NotI site, clone
           NL1-ZF15RS
          Length = 819

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 234 tgctgncgccgaagcggcggctg 256
           ||||| |||||||||||||||||
Sbjct: 17  tgctgccgccgaagcggcggctg 39
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 158     tccgcgccgagcgcgggcac 177
               ||||||||||||||||||||
Sbjct: 2237953 tccgcgccgagcgcgggcac 2237972
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 160    cgcgccgagcgcgggcacca 179
              ||||||||||||||||||||
Sbjct: 156292 cgcgccgagcgcgggcacca 156273
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 208     cgcctccgcgacggaccggc 227
               ||||||||||||||||||||
Sbjct: 1947700 cgcctccgcgacggaccggc 1947681
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>emb|AJ001140.1|AFJ001140 Avena fatua mRNA for VIVIPAROUS 1 homologue transcription factor
          Length = 2336

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 37  caccaccaccagcagccgcc 56
           ||||||||||||||||||||
Sbjct: 576 caccaccaccagcagccgcc 557


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,505,166
Number of Sequences: 3902068
Number of extensions: 2505166
Number of successful extensions: 57778
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56824
Number of HSP's gapped (non-prelim): 946
length of query: 338
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 316
effective length of database: 17,147,199,772
effective search space: 5418515127952
effective search space used: 5418515127952
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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