| Clone Name | bast76e07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_189239.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1317 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Plus Query: 332 tcgacctcgcggccctccgcgttcccgccgccgcctgcgcgtccctcgagcgccgcctcc 391 |||| ||||| ||||||||||| || ||||||||||| ||| |||||||||| ||||||| Sbjct: 263 tcgatctcgccgccctccgcgtcccggccgccgcctgtgcgcccctcgagcgtcgcctcc 322 Query: 392 gcggacacttgctcaactggccccgggtccgcaac 426 | || ||| | ||||||||||| || || |||||| Sbjct: 323 gtggccacctcctcaactggcctcgcgtgcgcaac 357 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 259 ggcccctcgctccgccgcggccgcc 283 ||||||||||||||||||||||||| Sbjct: 193 ggcccctcgctccgccgcggccgcc 217
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Plus Query: 332 tcgacctcgcggccctccgcgttcccgccgccgcctgcgcgtccctcgagcgccgcctcc 391 |||| ||||| ||||||||||| || ||||||||||| ||| |||||||||| ||||||| Sbjct: 16462690 tcgatctcgccgccctccgcgtcccggccgccgcctgtgcgcccctcgagcgtcgcctcc 16462749 Query: 392 gcggacacttgctcaactggccccgggtccgcaac 426 | || ||| | ||||||||||| || || |||||| Sbjct: 16462750 gtggccacctcctcaactggcctcgcgtgcgcaac 16462784 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 259 ggcccctcgctccgccgcggccgcc 283 ||||||||||||||||||||||||| Sbjct: 16462620 ggcccctcgctccgccgcggccgcc 16462644 Score = 46.1 bits (23), Expect = 0.100 Identities = 23/23 (100%) Strand = Plus / Plus Query: 344 ccctccgcgttcccgccgccgcc 366 ||||||||||||||||||||||| Sbjct: 37583984 ccctccgcgttcccgccgccgcc 37584006 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 cctccttctccgcctccacc 187 |||||||||||||||||||| Sbjct: 17055054 cctccttctccgcctccacc 17055035 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 cctccttctccgcctccacc 187 |||||||||||||||||||| Sbjct: 10732978 cctccttctccgcctccacc 10732997
>dbj|AP004613.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1123_G09 Length = 107491 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Plus Query: 332 tcgacctcgcggccctccgcgttcccgccgccgcctgcgcgtccctcgagcgccgcctcc 391 |||| ||||| ||||||||||| || ||||||||||| ||| |||||||||| ||||||| Sbjct: 70287 tcgatctcgccgccctccgcgtcccggccgccgcctgtgcgcccctcgagcgtcgcctcc 70346 Query: 392 gcggacacttgctcaactggccccgggtccgcaac 426 | || ||| | ||||||||||| || || |||||| Sbjct: 70347 gtggccacctcctcaactggcctcgcgtgcgcaac 70381 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 259 ggcccctcgctccgccgcggccgcc 283 ||||||||||||||||||||||||| Sbjct: 70217 ggcccctcgctccgccgcggccgcc 70241
>dbj|AK101833.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069B09, full insert sequence Length = 1754 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Plus Query: 332 tcgacctcgcggccctccgcgttcccgccgccgcctgcgcgtccctcgagcgccgcctcc 391 |||| ||||| ||||||||||| || ||||||||||| ||| |||||||||| ||||||| Sbjct: 310 tcgatctcgccgccctccgcgtcccggccgccgcctgtgcgcccctcgagcgtcgcctcc 369 Query: 392 gcggacacttgctcaactggccccgggtccgcaac 426 | || ||| | ||||||||||| || || |||||| Sbjct: 370 gtggccacctcctcaactggcctcgcgtgcgcaac 404 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 259 ggcccctcgctccgccgcggccgcc 283 ||||||||||||||||||||||||| Sbjct: 240 ggcccctcgctccgccgcggccgcc 264
>dbj|AK067433.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102N19, full insert sequence Length = 1939 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Plus Query: 332 tcgacctcgcggccctccgcgttcccgccgccgcctgcgcgtccctcgagcgccgcctcc 391 |||| ||||| ||||||||||| || ||||||||||| ||| |||||||||| ||||||| Sbjct: 310 tcgatctcgccgccctccgcgtcccggccgccgcctgtgcgcccctcgagcgtcgcctcc 369 Query: 392 gcggacacttgctcaactggccccgggtccgcaac 426 | || ||| | ||||||||||| || || |||||| Sbjct: 370 gtggccacctcctcaactggcctcgcgtgcgcaac 404 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 259 ggcccctcgctccgccgcggccgcc 283 |||||||||||||||| |||||||| Sbjct: 240 ggcccctcgctccgcctcggccgcc 264
>dbj|AK106834.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-G05, full insert sequence Length = 2533 Score = 71.9 bits (36), Expect = 2e-09 Identities = 69/80 (86%) Strand = Plus / Plus Query: 332 tcgacctcgcggccctccgcgttcccgccgccgcctgcgcgtccctcgagcgccgcctcc 391 |||| ||||| ||||||||||| || ||||||||||| ||| |||||||||| ||||||| Sbjct: 316 tcgatctcgccgccctccgcgtcccggccgccgcctgtgcgcccctcgagcgtcgcctcc 375 Query: 392 gcggacacttgctcaactgg 411 | || ||| | ||||||||| Sbjct: 376 gtggccacctcctcaactgg 395 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 259 ggcccctcgctccgccgcggccgcc 283 ||||||||||||||||||||||||| Sbjct: 246 ggcccctcgctccgccgcggccgcc 270
>gb|AY023545.1| Oryza sativa microsatellite MRG5870 containing (TGG)X8, genomic sequence Length = 224 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Minus Query: 259 ggcccctcgctccgccgcggccgcc 283 ||||||||||||||||||||||||| Sbjct: 50 ggcccctcgctccgccgcggccgcc 26
>ref|NM_190766.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1161 Score = 46.1 bits (23), Expect = 0.100 Identities = 23/23 (100%) Strand = Plus / Minus Query: 344 ccctccgcgttcccgccgccgcc 366 ||||||||||||||||||||||| Sbjct: 470 ccctccgcgttcccgccgccgcc 448
>emb|AL357140.33| Human DNA sequence from clone RP11-84A14 on chromosome 1 Contains the 5' end of the CLSTN1 gene for calsyntenin 1, the CTNNBIP1 gene for catenin, beta interacting protein 1, two novel genes, the LZIC gene for leucine zipper and CTNNBIP1 domain containing, the 5' end of the NMNAT1 gene for nicotinamide nucleotide adenylyltransferase 1 and a CpG island, complete sequence Length = 177470 Score = 46.1 bits (23), Expect = 0.100 Identities = 23/23 (100%) Strand = Plus / Minus Query: 2 ttgctctctccctctttcctttt 24 ||||||||||||||||||||||| Sbjct: 42734 ttgctctctccctctttcctttt 42712
>emb|AJ238890.1|MMU238890 Mus musculus p19 gene (partial), alternative reading frame, exon 1 and CpG island Length = 4926 Score = 46.1 bits (23), Expect = 0.100 Identities = 23/23 (100%) Strand = Plus / Minus Query: 166 cgcctccttctccgcctccaccc 188 ||||||||||||||||||||||| Sbjct: 1605 cgcctccttctccgcctccaccc 1583
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 46.1 bits (23), Expect = 0.100 Identities = 23/23 (100%) Strand = Plus / Plus Query: 164 gccgcctccttctccgcctccac 186 ||||||||||||||||||||||| Sbjct: 320931 gccgcctccttctccgcctccac 320953 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 ctcgagcgccgcctccgcgg 395 |||||||||||||||||||| Sbjct: 4231543 ctcgagcgccgcctccgcgg 4231524
>dbj|AP003286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0677H08 Length = 178830 Score = 46.1 bits (23), Expect = 0.100 Identities = 23/23 (100%) Strand = Plus / Plus Query: 344 ccctccgcgttcccgccgccgcc 366 ||||||||||||||||||||||| Sbjct: 44458 ccctccgcgttcccgccgccgcc 44480
>emb|AL831719.6| Mouse DNA sequence from clone RP23-166I8 on chromosome 4, complete sequence Length = 194025 Score = 46.1 bits (23), Expect = 0.100 Identities = 23/23 (100%) Strand = Plus / Minus Query: 166 cgcctccttctccgcctccaccc 188 ||||||||||||||||||||||| Sbjct: 9812 cgcctccttctccgcctccaccc 9790
>ref|XM_470653.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 6216 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 164 gccgcctccttctccgcctccaccct 189 ||||||||| |||||||||||||||| Sbjct: 185 gccgcctccgtctccgcctccaccct 160
>ref|XM_882257.1| PREDICTED: Bos taurus similar to Malonyl CoA-acyl carrier protein transacylase, mitochondrial precursor (MCT) (Mitochondrial malonyltransferase), transcript variant 3 (LOC508130), mRNA Length = 1034 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 354 tcccgccgccgcctgcgcgtcc 375 |||||||||||||||||||||| Sbjct: 171 tcccgccgccgcctgcgcgtcc 150
>ref|XM_584864.2| PREDICTED: Bos taurus similar to Malonyl CoA-acyl carrier protein transacylase, mitochondrial precursor (MCT) (Mitochondrial malonyltransferase), transcript variant 1 (LOC508130), mRNA Length = 1987 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 354 tcccgccgccgcctgcgcgtcc 375 |||||||||||||||||||||| Sbjct: 171 tcccgccgccgcctgcgcgtcc 150
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 164 gccgcctccttctccgcctccaccct 189 ||||||||| |||||||||||||||| Sbjct: 9779855 gccgcctccgtctccgcctccaccct 9779830 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 164 gccgcctccttctccgcctccaccc 188 |||||||||| |||||||||||||| Sbjct: 24978105 gccgcctcctcctccgcctccaccc 24978081
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 168 cctccttctccgcctccaccct 189 |||||||||||||||||||||| Sbjct: 23773044 cctccttctccgcctccaccct 23773065
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 164 gccgcctccttctccgcctccaccct 189 ||||||||| |||||||||||||||| Sbjct: 9777976 gccgcctccgtctccgcctccaccct 9777951 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 164 gccgcctccttctccgcctccaccc 188 |||||||||| |||||||||||||| Sbjct: 25069380 gccgcctcctcctccgcctccaccc 25069356
>gb|AC134232.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0013D02, complete sequence Length = 131883 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 164 gccgcctccttctccgcctccaccct 189 ||||||||| |||||||||||||||| Sbjct: 94642 gccgcctccgtctccgcctccaccct 94667
>dbj|AP005437.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1113_E01 Length = 73706 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 168 cctccttctccgcctccaccct 189 |||||||||||||||||||||| Sbjct: 27974 cctccttctccgcctccaccct 27995
>emb|AL591762.13| Mouse DNA sequence from clone RP23-465I6 on chromosome 2, complete sequence Length = 137773 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 5 ctctctccctctttccttttgctttt 30 ||||||||||||||||||||| |||| Sbjct: 68944 ctctctccctctttccttttgttttt 68919
>ref|XM_469022.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1766 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 164 gccgcctccttctccgcctccaccc 188 |||||||||| |||||||||||||| Sbjct: 206 gccgcctcctcctccgcctccaccc 182
>gb|AC145381.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0024K17 map near S16403, complete sequence Length = 172238 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 164 gccgcctccttctccgcctccaccc 188 |||||||||| |||||||||||||| Sbjct: 94508 gccgcctcctcctccgcctccaccc 94484
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 260 gcccctcgctccgccgcggcc 280 ||||||||||||||||||||| Sbjct: 2320112 gcccctcgctccgccgcggcc 2320132
>gb|AC136743.5| Mus musculus chromosome 9, clone RP23-149D5, complete sequence Length = 213343 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 5 ctctctccctctttccttttgcttt 29 |||||||||||||||||||| |||| Sbjct: 151145 ctctctccctctttcctttttcttt 151169
>gb|AC138001.2| Oryza sativa chromosome 3 BAC OSJNBa0093M23 genomic sequence, complete sequence Length = 170020 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 164 gccgcctccttctccgcctccaccc 188 |||||||||| |||||||||||||| Sbjct: 9912 gccgcctcctcctccgcctccaccc 9888
>emb|AL607008.2|OSJN00119 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0026E15, complete sequence Length = 137874 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 336 cctcgcggccctccgcgttcccgcc 360 |||||||||| |||||||||||||| Sbjct: 23508 cctcgcggccgtccgcgttcccgcc 23532
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 336 cctcgcggccctccgcgttcccgcc 360 |||||||||| |||||||||||||| Sbjct: 6469260 cctcgcggccgtccgcgttcccgcc 6469284 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 actcgacctcgcggccctcc 349 |||||||||||||||||||| Sbjct: 7217976 actcgacctcgcggccctcc 7217995
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 236 cgcctctccaacctcctcccc 256 ||||||||||||||||||||| Sbjct: 10770221 cgcctctccaacctcctcccc 10770241 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 374 ccctcgagcgccgcctccgcg 394 ||||||||||||||||||||| Sbjct: 5060271 ccctcgagcgccgcctccgcg 5060291
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 377 tcgagcgccgcctccgcggac 397 ||||||||||||||||||||| Sbjct: 6143724 tcgagcgccgcctccgcggac 6143744
>dbj|AP003977.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1006_A02 Length = 175153 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 377 tcgagcgccgcctccgcggac 397 ||||||||||||||||||||| Sbjct: 109206 tcgagcgccgcctccgcggac 109226
>dbj|AK098904.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002D05, full insert sequence Length = 2237 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 236 cgcctctccaacctcctcccc 256 ||||||||||||||||||||| Sbjct: 156 cgcctctccaacctcctcccc 176
>dbj|AK065041.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001H18, full insert sequence Length = 2237 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 236 cgcctctccaacctcctcccc 256 ||||||||||||||||||||| Sbjct: 156 cgcctctccaacctcctcccc 176
>gb|AC155266.2| Mus musculus BAC clone RP23-259L1 from 12, complete sequence Length = 186747 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 gcctccttctccgcctccacc 187 ||||||||||||||||||||| Sbjct: 154230 gcctccttctccgcctccacc 154210
>emb|Y19225.1|MMY19225 Mus musculus partial GIR gene for glucocorticoid induced receptor, exon 1 and joined CDS Length = 2650 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 5 ctctctccctctttccttttgcttt 29 |||||||||||||||||||| |||| Sbjct: 1896 ctctctccctctttcctttttcttt 1920
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 236 cgcctctccaacctcctcccc 256 ||||||||||||||||||||| Sbjct: 10769920 cgcctctccaacctcctcccc 10769940 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 374 ccctcgagcgccgcctccgcg 394 ||||||||||||||||||||| Sbjct: 5060253 ccctcgagcgccgcctccgcg 5060273
>emb|AL831795.4|CNS08CA8 Oryza sativa chromosome 12, . BAC OSJNBb0085N21 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 135105 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 236 cgcctctccaacctcctcccc 256 ||||||||||||||||||||| Sbjct: 135070 cgcctctccaacctcctcccc 135090
>emb|AL662965.3|OSJN00167 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0040D17, complete sequence Length = 147548 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 336 cctcgcggccctccgcgttcccgcc 360 |||||||||| |||||||||||||| Sbjct: 131409 cctcgcggccgtccgcgttcccgcc 131433
>emb|AL731876.3|CNS08C8G Oryza sativa chromosome 12, . BAC OJ1194_E11 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 119388 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 236 cgcctctccaacctcctcccc 256 ||||||||||||||||||||| Sbjct: 36570 cgcctctccaacctcctcccc 36590
>emb|AL713901.3|CNS07YQ1 Oryza sativa chromosome 12, . BAC OJ1102_B11 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 112231 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 374 ccctcgagcgccgcctccgcg 394 ||||||||||||||||||||| Sbjct: 30924 ccctcgagcgccgcctccgcg 30944
>gb|AC133083.3| Mus musculus BAC clone RP24-342G5 from 12, complete sequence Length = 191265 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 167 gcctccttctccgcctccacc 187 ||||||||||||||||||||| Sbjct: 158306 gcctccttctccgcctccacc 158326
>ref|XM_474852.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1572 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 actcgacctcgcggccctcc 349 |||||||||||||||||||| Sbjct: 754 actcgacctcgcggccctcc 735
>ref|XM_450464.1| Oryza sativa (japonica cultivar-group), mRNA Length = 558 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 164 gccgcctccttctccgcctccacc 187 |||||||||||| ||||||||||| Sbjct: 50 gccgcctccttcgccgcctccacc 27
>gb|AC118682.8| Mus musculus chromosome 1, clone RP23-448B17, complete sequence Length = 195334 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 gcccctcgctccgccgcggc 279 |||||||||||||||||||| Sbjct: 23023 gcccctcgctccgccgcggc 23042
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 ccgcctccttctccgcctcc 184 |||||||||||||||||||| Sbjct: 1022443 ccgcctccttctccgcctcc 1022424
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 ctcgcgcacactcgacctcg 340 |||||||||||||||||||| Sbjct: 1619436 ctcgcgcacactcgacctcg 1619455
>ref|XM_590989.2| PREDICTED: Bos taurus similar to Leucine zipper-EF-hand containing transmembrane protein 1, mitochondrial precursor (LOC513324), mRNA Length = 2388 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 ggccgcctccttctccgcct 182 |||||||||||||||||||| Sbjct: 2238 ggccgcctccttctccgcct 2219
>gb|AC116130.15| Mus musculus chromosome 17, clone RP23-98F21, complete sequence Length = 228842 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 tttgctctctccctctttcctttt 24 |||||| ||||||||||||||||| Sbjct: 205919 tttgctttctccctctttcctttt 205896
>gb|AF109012.1| Gallus gallus NSCL2 protein (NSCL2) mRNA, complete cds Length = 1311 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 339 cgcggccctccgcgttcccgccgccgcc 366 |||||||||||||| |||| |||||||| Sbjct: 935 cgcggccctccgcgctccccccgccgcc 908
>gb|AC099597.6| Mus musculus chromosome 17, clone RP23-78K9, complete sequence Length = 272221 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 ctctctccctctttcctttt 24 |||||||||||||||||||| Sbjct: 165581 ctctctccctctttcctttt 165562
>gb|AC105153.6| Mus musculus chromosome 17, clone RP24-376L20, complete sequence Length = 184920 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 ctctctccctctttcctttt 24 |||||||||||||||||||| Sbjct: 48126 ctctctccctctttcctttt 48107
>ref|XM_359291.3| PREDICTED: Mus musculus ring finger protein 39, transcript variant 1 (Rnf39), mRNA Length = 3401 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 tttgctctctccctctttcctttt 24 |||||| ||||||||||||||||| Sbjct: 2437 tttgctttctccctctttcctttt 2460
>gb|AC004540.1| Homo sapiens PAC clone RP5-1066K24 from 7, complete sequence Length = 131757 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 tctccctctttccttttgct 27 |||||||||||||||||||| Sbjct: 95170 tctccctctttccttttgct 95151
>gb|AY497901.1| Homo sapiens interleukin 16 (lymphocyte chemoattractant factor) (IL16) gene, complete cds Length = 21072 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 tgctctctccctctttcctt 22 |||||||||||||||||||| Sbjct: 2023 tgctctctccctctttcctt 2042
>emb|CT010484.7| Mouse DNA sequence from clone RP23-296N14 on chromosome 17, complete sequence Length = 212827 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 ctctctccctctttcctttt 24 |||||||||||||||||||| Sbjct: 183134 ctctctccctctttcctttt 183115
>ref|XM_381246.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01070.1) partial mRNA Length = 654 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 164 gccgcctccttctccgcctccacc 187 |||||||||| ||||||||||||| Sbjct: 225 gccgcctcctcctccgcctccacc 248
>gb|AC123032.5| Mus musculus BAC clone RP24-480K24 from chromosome 10, complete sequence Length = 162676 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 60 ccagttcccctgcttcaccccctattcc 87 ||||| |||||||||||||||| ||||| Sbjct: 16954 ccagtacccctgcttcacccccaattcc 16981
>gb|BC056844.1| Xenopus laevis hypothetical protein MGC64376, mRNA (cDNA clone MGC:64376 IMAGE:6878319), complete cds Length = 1554 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 3 tgctctctccctctttccttttgctttt 30 ||||||||||||||||||| ||||||| Sbjct: 553 tgctctctccctctttcctcctgctttt 526
>emb|CR847832.18| Zebrafish DNA sequence from clone DKEY-30K23 in linkage group 8, complete sequence Length = 135277 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 cctccttctccgcctccacc 187 |||||||||||||||||||| Sbjct: 96634 cctccttctccgcctccacc 96615
>gb|AC121602.2| Mus musculus BAC clone RP23-309B19 from 10, complete sequence Length = 182661 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 60 ccagttcccctgcttcaccccctattcc 87 ||||| |||||||||||||||| ||||| Sbjct: 39499 ccagtacccctgcttcacccccaattcc 39472
>gb|AC146142.1| Pan troglodytes BAC clone RP43-23M11 from 7, complete sequence Length = 173557 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 tctccctctttccttttgct 27 |||||||||||||||||||| Sbjct: 62023 tctccctctttccttttgct 62004
>emb|Z98049.1|HS427A4 Human DNA sequence from clone RP3-427A4 on chromosome 6q26-27 Contains the 5' end of the RPS6KA2 gene for ribosomal protein S6 kinase, 90kD, polypeptide 2 (RSK3), the gene for a novel protein and a CpG island, complete sequence Length = 149466 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 ccgcctccttctccgcctcc 184 |||||||||||||||||||| Sbjct: 25515 ccgcctccttctccgcctcc 25496
>emb|Z94055.1|HS24M15 Human DNA sequence from clone RP1-24M15 on chromosome 1q24-25 Contains part of the TNR gene fortenascin R (restrictin, janusin), complete sequence Length = 134539 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 ctctctccctctttcctttt 24 |||||||||||||||||||| Sbjct: 124293 ctctctccctctttcctttt 124312
>ref|XM_501190.1| Yarrowia lipolytica CLIB122, YALI0B21626g predicted mRNA Length = 3594 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 ccgcctccttctccgcctcc 184 |||||||||||||||||||| Sbjct: 1678 ccgcctccttctccgcctcc 1659
>emb|AL162400.11| Human DNA sequence from clone RP11-5P4 on chromosome 1p31.3-32.3 Contains three novel genes, complete sequence Length = 117840 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 ctctctccctctttcctttt 24 |||||||||||||||||||| Sbjct: 39386 ctctctccctctttcctttt 39405
>emb|AL162377.10| Human DNA sequence from clone RP11-327P2 on chromosome 13 Contains 3 novel genes, a meningioma-expressed antigen 6/11 (MEA6) (MEA11) pseudogene and the 3' end of the ATP7B gene for ATPase, Cu++ transporting, beta polypeptide (Wilson disease), complete sequence Length = 169104 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 tgctctctccctctttcctt 22 |||||||||||||||||||| Sbjct: 146427 tgctctctccctctttcctt 146408
>gb|AC153839.10| Mus musculus 6 BAC RP23-93A21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 225351 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 tttgctttttacagctctag 41 |||||||||||||||||||| Sbjct: 2796 tttgctttttacagctctag 2815
>gb|AC153993.23| Mus musculus 6 BAC RP24-568N16 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 188187 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 tttgctttttacagctctag 41 |||||||||||||||||||| Sbjct: 54385 tttgctttttacagctctag 54404
>emb|AL161505.2|ATCHRIV17 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 17 Length = 198176 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 ctccaacctcctccccacgg 260 |||||||||||||||||||| Sbjct: 187256 ctccaacctcctccccacgg 187275
>gb|AF533768.1| Cercopithecine herpesvirus 1 strain E2490, complete genome Length = 156789 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 357 cgccgccgcctgcgcgtccctcga 380 ||||||||||| |||||||||||| Sbjct: 102873 cgccgccgcctacgcgtccctcga 102850
>emb|BX511181.13| Zebrafish DNA sequence from clone DKEY-100H5 in linkage group 24, complete sequence Length = 160005 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 ctctctccctctttcctttt 24 |||||||||||||||||||| Sbjct: 46845 ctctctccctctttcctttt 46826
>gb|AF002109.3| Arabidopsis thaliana chromosome 2 clone T28M21 map CIC10A06, complete sequence Length = 108847 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 cctctttccttttgcttttt 31 |||||||||||||||||||| Sbjct: 14282 cctctttccttttgcttttt 14263
>gb|AC006429.4| Arabidopsis thaliana chromosome 2 clone F15K19 map mi421, complete sequence Length = 94875 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 ctccaacctcctccccacgg 260 |||||||||||||||||||| Sbjct: 74812 ctccaacctcctccccacgg 74793
>gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map CIC10A06, complete sequence Length = 92624 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 cctctttccttttgcttttt 31 |||||||||||||||||||| Sbjct: 88154 cctctttccttttgcttttt 88135
>gb|AC103858.2| Homo sapiens chromosome 15, clone RP11-761I4, complete sequence Length = 194996 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 tgctctctccctctttcctt 22 |||||||||||||||||||| Sbjct: 110893 tgctctctccctctttcctt 110912
>dbj|AK132303.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library, clone:4021402O04 product:quaking, full insert sequence Length = 5431 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 339 cgcggccctccgcgttcccgccgccgcc 366 |||||| ||||||||| ||||||||||| Sbjct: 107 cgcggcgctccgcgttaccgccgccgcc 80
>dbj|AK162607.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:9630054D02 product:protein phosphatase 1, regulatory (inhibitor) subunit 11, full insert sequence Length = 1564 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 tttgctctctccctctttcctttt 24 |||||| ||||||||||||||||| Sbjct: 1335 tttgctttctccctctttcctttt 1312
>dbj|AK076834.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930504A14 product:unclassifiable, full insert sequence Length = 1020 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 ctctctccctctttcctttt 24 |||||||||||||||||||| Sbjct: 855 ctctctccctctttcctttt 874
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 164 gccgcctccttctccgcctccacc 187 |||||||||||| ||||||||||| Sbjct: 5735662 gccgcctccttcgccgcctccacc 5735639
>gb|AF532114.1| Mus musculus strain 129/SvJ BAC clone citb544e14 from the MHC region, complete sequence Length = 153869 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 tttgctctctccctctttcctttt 24 |||||| ||||||||||||||||| Sbjct: 21978 tttgctttctccctctttcctttt 22001
>gb|AF532112.1| Mus musculus strain 129/SvJ BAC clone citb20h22 from the MHC region, complete sequence Length = 172199 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 tttgctctctccctctttcctttt 24 |||||| ||||||||||||||||| Sbjct: 116394 tttgctttctccctctttcctttt 116417
>gb|AC158675.4| Mus musculus 6 BAC RP23-180J21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 226948 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 ctctctccctctttcctttt 24 |||||||||||||||||||| Sbjct: 94718 ctctctccctctttcctttt 94699
>dbj|AP002820.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0702D12 Length = 137332 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 cctccttctccgcctccacc 187 |||||||||||||||||||| Sbjct: 55792 cctccttctccgcctccacc 55811
>ref|NM_204797.1| Gallus gallus NSCL2 protein (NSCL2), mRNA Length = 1311 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 339 cgcggccctccgcgttcccgccgccgcc 366 |||||||||||||| |||| |||||||| Sbjct: 935 cgcggccctccgcgctccccccgccgcc 908
>ref|XM_574316.1| PREDICTED: Rattus norvegicus similar to QUAKING isoform 6 (LOC499022), mRNA Length = 4087 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 339 cgcggccctccgcgttcccgccgccgcc 366 |||||| ||||||||| ||||||||||| Sbjct: 1875 cgcggcgctccgcgttgccgccgccgcc 1848
>gb|AF121105.1|AF121105 Homo sapiens interleukin 16 gene, partial 5'UTR Length = 4163 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 tgctctctccctctttcctt 22 |||||||||||||||||||| Sbjct: 2307 tgctctctccctctttcctt 2326
>gb|AC067965.2| Genomic sequence for Arabidopsis thaliana BAC T28N5 from chromosome I, complete sequence Length = 64165 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 ctccaacctcctccccacgg 260 |||||||||||||||||||| Sbjct: 47421 ctccaacctcctccccacgg 47440 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 ctccaacctcctccccacgg 260 |||||||||||||||||||| Sbjct: 43514 ctccaacctcctccccacgg 43533
>dbj|AP004723.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1126_G08 Length = 157455 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 cctccttctccgcctccacc 187 |||||||||||||||||||| Sbjct: 52003 cctccttctccgcctccacc 51984
>dbj|AP005594.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0701E06 Length = 123415 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 164 gccgcctccttctccgcctccacc 187 |||||||||||| ||||||||||| Sbjct: 31867 gccgcctccttcgccgcctccacc 31844
>emb|AL935129.25| Mouse DNA sequence from clone RP23-181O3 on chromosome 2, complete sequence Length = 216639 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 ccctggccgcctccttctcc 178 |||||||||||||||||||| Sbjct: 40547 ccctggccgcctccttctcc 40566
>emb|BX247945.6| Zebrafish DNA sequence from clone CH211-209L14 in linkage group 24, complete sequence Length = 199345 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 ctctctccctctttcctttt 24 |||||||||||||||||||| Sbjct: 67229 ctctctccctctttcctttt 67210
>dbj|AB086244.1| Arabidopsis thaliana DNA, chromosome 1 centromere region, BAC clone:F11K13 Length = 52015 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 ctccaacctcctccccacgg 260 |||||||||||||||||||| Sbjct: 16227 ctccaacctcctccccacgg 16208 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 ctccaacctcctccccacgg 260 |||||||||||||||||||| Sbjct: 12320 ctccaacctcctccccacgg 12301
>dbj|AB073159.1| Arabidopsis thaliana DNA, chromosome 4 centromere region, BAC clone:T2P22 Length = 81019 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 ctccaacctcctccccacgg 260 |||||||||||||||||||| Sbjct: 10950 ctccaacctcctccccacgg 10969
>dbj|AB073156.1| Arabidopsis thaliana DNA, chromosome 4 centromere region, BAC clone:F13F19 Length = 97397 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 ctccaacctcctccccacgg 260 |||||||||||||||||||| Sbjct: 4093 ctccaacctcctccccacgg 4074
>dbj|AB073155.1| Arabidopsis thaliana DNA, chromosome 4 centromere region, BAC clone:F19O5 Length = 116597 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 ctccaacctcctccccacgg 260 |||||||||||||||||||| Sbjct: 115020 ctccaacctcctccccacgg 115001
>dbj|AK069629.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023024E15, full insert sequence Length = 1869 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 actcgacctcgcggccctcc 349 |||||||||||||||||||| Sbjct: 819 actcgacctcgcggccctcc 800
>gb|AF147264.1|T3E15 Arabidopsis thaliana BAC T3E15 Length = 126087 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 ctccaacctcctccccacgg 260 |||||||||||||||||||| Sbjct: 11735 ctccaacctcctccccacgg 11754
>gb|AF077011.1|AF077011 Homo sapiens interleukin 16 (IL16) gene, complete cds Length = 15936 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 tgctctctccctctttcctt 22 |||||||||||||||||||| Sbjct: 1384 tgctctctccctctttcctt 1403
>dbj|AB096160.1| Cercopithecine herpesvirus 1 DNA, UL region, complete sequence Length = 106873 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 357 cgccgccgcctgcgcgtccctcga 380 ||||||||||| |||||||||||| Sbjct: 93758 cgccgccgcctacgcgtccctcga 93735
>dbj|AB093275.1| Mus musculus mRNA for mKIAA0952 protein Length = 4938 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 ccctggccgcctccttctcc 178 |||||||||||||||||||| Sbjct: 3493 ccctggccgcctccttctcc 3512
>emb|AL772135.14| Mouse DNA sequence from clone RP23-162G11 on chromosome 2, complete sequence Length = 230161 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 ctctctccctctttcctttt 24 |||||||||||||||||||| Sbjct: 136800 ctctctccctctttcctttt 136781
>gb|AC005960.1|AC005960 Mus musculus chromosome 17 BAC citb20h22 from the MHC region, complete sequence Length = 158414 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 tttgctctctccctctttcctttt 24 |||||| ||||||||||||||||| Sbjct: 116376 tttgctttctccctctttcctttt 116399
>gb|U44942.1|MMU44942 Mus musculus recombinant quaking gene sequence Length = 3536 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 339 cgcggccctccgcgttcccgccgccgcc 366 |||||| ||||||||| ||||||||||| Sbjct: 2281 cgcggcgctccgcgttaccgccgccgcc 2254
>gb|U44940.1|MMU44940 Mus musculus quaking type I (QKI) mRNA, complete cds Length = 6747 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 339 cgcggccctccgcgttcccgccgccgcc 366 |||||| ||||||||| ||||||||||| Sbjct: 125 cgcggcgctccgcgttaccgccgccgcc 98
>emb|AL606994.3|OSJN00114 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0035O13, complete sequence Length = 143298 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 actcgacctcgcggccctcc 349 |||||||||||||||||||| Sbjct: 81713 actcgacctcgcggccctcc 81732
>ref|NM_145534.2| Mus musculus BTB (POZ) domain containing 3 (Btbd3), transcript variant 1, mRNA Length = 4979 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 ccctggccgcctccttctcc 178 |||||||||||||||||||| Sbjct: 3494 ccctggccgcctccttctcc 3513
>ref|NM_001025431.1| Mus musculus BTB (POZ) domain containing 3 (Btbd3), transcript variant 2, mRNA Length = 4677 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 ccctggccgcctccttctcc 178 |||||||||||||||||||| Sbjct: 3192 ccctggccgcctccttctcc 3211
>gb|BC062968.1| Mus musculus BTB (POZ) domain containing 3, transcript variant 1, mRNA (cDNA clone MGC:76394 IMAGE:6408511), complete cds Length = 4675 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 ccctggccgcctccttctcc 178 |||||||||||||||||||| Sbjct: 3190 ccctggccgcctccttctcc 3209
>emb|CR956641.9| Mouse DNA sequence from clone RP23-77N9 on chromosome 17, complete sequence Length = 202624 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 tttgctctctccctctttcctttt 24 |||||| ||||||||||||||||| Sbjct: 69414 tttgctttctccctctttcctttt 69391
>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica Length = 3066374 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 ccgcctccttctccgcctcc 184 |||||||||||||||||||| Sbjct: 2846575 ccgcctccttctccgcctcc 2846594
>emb|AL772249.6| Mouse DNA sequence from clone RP23-430H1 on chromosome 2, complete sequence Length = 204907 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 tttgctctctccctctttcc 20 |||||||||||||||||||| Sbjct: 80826 tttgctctctccctctttcc 80845
>emb|AL606906.18| Mouse DNA sequence from clone RP23-121J14 on chromosome 4, complete sequence Length = 198772 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 ctctctccctctttcctttt 24 |||||||||||||||||||| Sbjct: 41074 ctctctccctctttcctttt 41055 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,755,596 Number of Sequences: 3902068 Number of extensions: 3755596 Number of successful extensions: 97016 Number of sequences better than 10.0: 113 Number of HSP's better than 10.0 without gapping: 119 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 95164 Number of HSP's gapped (non-prelim): 1852 length of query: 456 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 434 effective length of database: 17,147,199,772 effective search space: 7441884701048 effective search space used: 7441884701048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)