>POLG_HCV1 (P26664) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/NT
          Length = 3010

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 19/45 (42%), Positives = 27/45 (60%)
 Frame = +3

Query: 3    LLDPRAHTHISAHSAGRGSEKRATKKPPKVCAMAASQLTILSVLA 137
            L DP   +HI+A +AGR   + A   PP V + +ASQL+  S+ A
Sbjct: 2174 LTDP---SHITAEAAGR---RLARGSPPSVASSSASQLSAPSLKA 2212

>SOX7_MOUSE (P40646) Transcription factor SOX-7 (mSOX7)|
          Length = 380

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 1   AYWTHAHTHTSQLTAQAEEARSEPPRNHPRF 93
           AY++HA  H      QA   +  PP  HP F
Sbjct: 274 AYYSHATYHPLHPNLQAHLGQLSPPPEHPGF 304

>IF2_LACAC (Q5FJN6) Translation initiation factor IF-2|
          Length = 877

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +3

Query: 3   LLDPRAHTHISAHSAG 50
           LLD   HTH+SAH AG
Sbjct: 396 LLDRLRHTHVSAHEAG 411

>SRP_DROME (P52172) Box A-binding factor (ABF) (GATA-binding factor-B)|
           (Transcription factor GATA-B) (dGATA-B) (Protein
           serpent)
          Length = 1264

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +2

Query: 11  PTRTHTHLSSQRRQRKREASHQETTQGLRNGRFSAHH 121
           P +T  HL  Q  Q++++   Q   Q L+  +   HH
Sbjct: 522 PNQTQAHLQQQHHQQQQQQHQQHQQQQLQQQQQQHHH 558

>POLG_HCVTW (P29846) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3009

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = +3

Query: 3    LLDPRAHTHISAHSAGRGSEKRATKKPPKVCAMAASQLTILSVLA 137
            L DP   +HI+A +A R   + A   PP + + +ASQL+ LS+ A
Sbjct: 2174 LTDP---SHITAETAKR---RLARGSPPSLASSSASQLSALSLKA 2212


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.312    0.118    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,409,720
Number of Sequences: 219361
Number of extensions: 155709
Number of successful extensions: 691
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 80,573,946
effective HSP length: 90
effective length of database: 60,831,456
effective search space used: 1459954944
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)