ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast76d10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_476905.1| Oryza sativa (japonica cultivar-group), mRNA 90 6e-15
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 90 6e-15
3dbj|AP003753.3| Oryza sativa (japonica cultivar-group) genomic D... 90 6e-15
4dbj|AK071133.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 6e-15
5dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 44 0.34
6gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence 42 1.4
7gb|AC125169.4| Mus musculus BAC clone RP24-464B24 from chromosom... 42 1.4
8dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
9dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 42 1.4
10dbj|AK109727.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
11gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
12emb|AL954829.6|CNS08CD5 Oryza sativa chromosome 12, . BAC OSJNBa... 42 1.4
13gb|CP000032.1| Silicibacter pomeroyi DSS-3 plasmid megaplasmid, ... 40 5.3
14gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 5.3
15ref|XM_365150.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 5.3
16ref|XM_957223.1| Neurospora crassa OR74A hypothetical protein (N... 40 5.3
17ref|XM_328379.1| Neurospora crassa OR74A hypothetical protein (N... 40 5.3
18gb|AY386265.1| Bovine papular stomatitis virus strain BV-AR02, c... 40 5.3
19gb|AC035149.4| Homo sapiens chromosome 5 clone RP11-207H9, compl... 40 5.3
20gb|AC008887.6| Homo sapiens chromosome 5 clone CTD-2219E12, comp... 40 5.3
21gb|AC073545.5| Homo sapiens chromosome 5 clone RP11-402L7, compl... 40 5.3
22ref|XM_394295.2| PREDICTED: Apis mellifera similar to ENSANGP000... 40 5.3
23dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome 40 5.3
24gb|AC011440.5|AC011440 Homo sapiens chromosome 14 clone RP11-23H... 40 5.3
25emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 5.3
26emb|AL772376.6| Mouse DNA sequence from clone RP23-30F6 on chrom... 40 5.3 
>ref|XM_476905.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1095

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 93/109 (85%)
 Strand = Plus / Plus

                                                                       
Query: 288 cgctcgaggtcggcctgcgcagcataaaccttgcgccgctgcgcccgccggttgcggcgg 347
           |||| |||||||||||||| ||| | ||||| |||||||||||  ||||||| || ||||
Sbjct: 317 cgctggaggtcggcctgcggagcgtcaacctcgcgccgctgcgggcgccggtggccgcgg 376

                                                            
Query: 348 ccatgtcggcggccgtgcgctggctgggggtctaccgggaggttctgct 396
           | ||||||||||  ||||| ||||||||||| ||| ||||||| |||||
Sbjct: 377 cgatgtcggcggtggtgcggtggctgggggtgtacagggaggtgctgct 425



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 139 ccgccccttcccgagcccggccacccgtctcct 171
           |||| ||||||||||||| |||||||| |||||
Sbjct: 156 ccgcgccttcccgagccccgccacccgcctcct 188
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 93/109 (85%)
 Strand = Plus / Minus

                                                                           
Query: 288     cgctcgaggtcggcctgcgcagcataaaccttgcgccgctgcgcccgccggttgcggcgg 347
               |||| |||||||||||||| ||| | ||||| |||||||||||  ||||||| || ||||
Sbjct: 4545622 cgctggaggtcggcctgcggagcgtcaacctcgcgccgctgcgggcgccggtggccgcgg 4545563

                                                                
Query: 348     ccatgtcggcggccgtgcgctggctgggggtctaccgggaggttctgct 396
               | ||||||||||  ||||| ||||||||||| ||| ||||||| |||||
Sbjct: 4545562 cgatgtcggcggtggtgcggtggctgggggtgtacagggaggtgctgct 4545514



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                
Query: 139     ccgccccttcccgagcccggccacccgtctcct 171
               |||| ||||||||||||| |||||||| |||||
Sbjct: 4545783 ccgcgccttcccgagccccgccacccgcctcct 4545751
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>dbj|AP003753.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1339_B08
          Length = 119212

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 93/109 (85%)
 Strand = Plus / Minus

                                                                         
Query: 288   cgctcgaggtcggcctgcgcagcataaaccttgcgccgctgcgcccgccggttgcggcgg 347
             |||| |||||||||||||| ||| | ||||| |||||||||||  ||||||| || ||||
Sbjct: 10962 cgctggaggtcggcctgcggagcgtcaacctcgcgccgctgcgggcgccggtggccgcgg 10903

                                                              
Query: 348   ccatgtcggcggccgtgcgctggctgggggtctaccgggaggttctgct 396
             | ||||||||||  ||||| ||||||||||| ||| ||||||| |||||
Sbjct: 10902 cgatgtcggcggtggtgcggtggctgggggtgtacagggaggtgctgct 10854



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 139   ccgccccttcccgagcccggccacccgtctcct 171
             |||| ||||||||||||| |||||||| |||||
Sbjct: 11123 ccgcgccttcccgagccccgccacccgcctcct 11091
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>dbj|AK071133.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023076B10, full
           insert sequence
          Length = 1095

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 93/109 (85%)
 Strand = Plus / Plus

                                                                       
Query: 288 cgctcgaggtcggcctgcgcagcataaaccttgcgccgctgcgcccgccggttgcggcgg 347
           |||| |||||||||||||| ||| | ||||| |||||||||||  ||||||| || ||||
Sbjct: 317 cgctggaggtcggcctgcggagcgtcaacctcgcgccgctgcgggcgccggtggccgcgg 376

                                                            
Query: 348 ccatgtcggcggccgtgcgctggctgggggtctaccgggaggttctgct 396
           | ||||||||||  ||||| ||||||||||| ||| ||||||| |||||
Sbjct: 377 cgatgtcggcggtggtgcggtggctgggggtgtacagggaggtgctgct 425



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 139 ccgccccttcccgagcccggccacccgtctcct 171
           |||| ||||||||||||| |||||||| |||||
Sbjct: 156 ccgcgccttcccgagccccgccacccgcctcct 188
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 286     gccgctcgaggtcggcctgcgc 307
               ||||||||||||||||||||||
Sbjct: 1439009 gccgctcgaggtcggcctgcgc 1438988
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>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence
          Length = 1395069

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 286    gccgctcgaggtcggcctgcgcagc 310
              |||| ||||||||||||||||||||
Sbjct: 135361 gccggtcgaggtcggcctgcgcagc 135337



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 352    gtcggcggccgtgcgctggc 371
              ||||||||||||||||||||
Sbjct: 357259 gtcggcggccgtgcgctggc 357278
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>gb|AC125169.4| Mus musculus BAC clone RP24-464B24 from chromosome 7, complete sequence
          Length = 121385

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 28    cttcctcttcccctgactctc 48
             |||||||||||||||||||||
Sbjct: 83378 cttcctcttcccctgactctc 83398
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 340      tgcggcggccatgtcggcggc 360
                |||||||||||||||||||||
Sbjct: 24827083 tgcggcggccatgtcggcggc 24827063
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 320   gcgccgctgcgcccgccggtt 340
             |||||||||||||||||||||
Sbjct: 58668 gcgccgctgcgcccgccggtt 58648
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>dbj|AK109727.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-146-B09, full
            insert sequence
          Length = 1935

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 340  tgcggcggccatgtcggcggc 360
            |||||||||||||||||||||
Sbjct: 1660 tgcggcggccatgtcggcggc 1680
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 340      tgcggcggccatgtcggcggc 360
                |||||||||||||||||||||
Sbjct: 24755289 tgcggcggccatgtcggcggc 24755269
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>emb|AL954829.6|CNS08CD5 Oryza sativa chromosome 12, . BAC OSJNBa0044E20 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 140383

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 340    tgcggcggccatgtcggcggc 360
              |||||||||||||||||||||
Sbjct: 134240 tgcggcggccatgtcggcggc 134220
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>gb|CP000032.1| Silicibacter pomeroyi DSS-3 plasmid megaplasmid, complete sequence
          Length = 491611

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 321    cgccgctgcgcccgccggtt 340
              ||||||||||||||||||||
Sbjct: 152080 cgccgctgcgcccgccggtt 152061
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 352    gtcggcggccgtgcgctggc 371
              ||||||||||||||||||||
Sbjct: 235379 gtcggcggccgtgcgctggc 235398
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>ref|XM_365150.1| Magnaporthe grisea 70-15 hypothetical protein (MG09995.4) partial
            mRNA
          Length = 4296

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 342  cggcggccatgtcggcggcc 361
            ||||||||||||||||||||
Sbjct: 3943 cggcggccatgtcggcggcc 3924
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>ref|XM_957223.1| Neurospora crassa OR74A hypothetical protein (NCU07674.1) partial
           mRNA
          Length = 1920

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 342 cggcggccatgtcggcggcc 361
           ||||||||||||||||||||
Sbjct: 190 cggcggccatgtcggcggcc 171
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>ref|XM_328379.1| Neurospora crassa OR74A hypothetical protein (NCU07674.1) partial
           mRNA
          Length = 1920

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 342 cggcggccatgtcggcggcc 361
           ||||||||||||||||||||
Sbjct: 190 cggcggccatgtcggcggcc 171
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>gb|AY386265.1| Bovine papular stomatitis virus strain BV-AR02, complete genome
          Length = 134431

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   cgtgtccccgtgcaccagga 128
             ||||||||||||||||||||
Sbjct: 16847 cgtgtccccgtgcaccagga 16866
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>gb|AC035149.4| Homo sapiens chromosome 5 clone RP11-207H9, complete sequence
          Length = 178505

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 47    tctaccaatcccaatccttgtaga 70
             ||||| ||||||||||||||||||
Sbjct: 39497 tctacaaatcccaatccttgtaga 39474
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>gb|AC008887.6| Homo sapiens chromosome 5 clone CTD-2219E12, complete sequence
          Length = 135804

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 47     tctaccaatcccaatccttgtaga 70
              ||||| ||||||||||||||||||
Sbjct: 113152 tctacaaatcccaatccttgtaga 113175
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>gb|AC073545.5| Homo sapiens chromosome 5 clone RP11-402L7, complete sequence
          Length = 178279

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 47     tctaccaatcccaatccttgtaga 70
              ||||| ||||||||||||||||||
Sbjct: 138783 tctacaaatcccaatccttgtaga 138806
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>ref|XM_394295.2| PREDICTED: Apis mellifera similar to ENSANGP00000011865 (LOC410819),
            mRNA
          Length = 2358

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 284  gcgccgctcgaggtcggcct 303
            ||||||||||||||||||||
Sbjct: 1617 gcgccgctcgaggtcggcct 1598
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>dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome
          Length = 2088737

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 331    cccgccggttgcggcggccatgtcggcg 358
              ||||||||  ||||||||||||||||||
Sbjct: 760143 cccgccgggggcggcggccatgtcggcg 760116
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>gb|AC011440.5|AC011440 Homo sapiens chromosome 14 clone RP11-23H16 containing NRXN3 gene,
             partial cds, complete sequence
          Length = 138747

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 47    tctaccaatcccaatccttgtaga 70
             ||||| ||||||||||||||||||
Sbjct: 17162 tctacaaatcccaatccttgtaga 17139
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 344     gcggccatgtcggcggccgtgcgc 367
               ||||||||| ||||||||||||||
Sbjct: 4313276 gcggccatggcggcggccgtgcgc 4313253
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>emb|AL772376.6| Mouse DNA sequence from clone RP23-30F6 on chromosome 4, complete
            sequence
          Length = 237323

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 368  tggctgggggtctaccgggaggtt 391
            ||||||||| ||||||||||||||
Sbjct: 4847 tggctggggttctaccgggaggtt 4870


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,924,345
Number of Sequences: 3902068
Number of extensions: 1924345
Number of successful extensions: 39762
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39269
Number of HSP's gapped (non-prelim): 493
length of query: 400
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 378
effective length of database: 17,147,199,772
effective search space: 6481641513816
effective search space used: 6481641513816
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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