ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bast76d06 |
|---|---|
| Clone Library Name | barley_pub |
>YM74_YEAST (Q05024) Hypothetical 26.5 kDa protein in FUS2-RNH1 intergenic| region Length = 226 Score = 64.7 bits (156), Expect = 1e-10 Identities = 28/67 (41%), Positives = 50/67 (74%) Frame = +1 Query: 253 VSPALQAFMGAAEVPRTEAMKRIWAYIKQNNLQDPEDKKIIVCDEKLKALFAGRERVGFL 432 +S LQ F+G+ E+PRT+ +K IW YIK+++LQ+P+D++ I+CDEK++ +F +++ Sbjct: 126 LSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIFG--KKMTMF 183 Query: 433 EVAKLLS 453 + KLL+ Sbjct: 184 SMNKLLT 190
>SMRD1_HUMAN (Q96GM5) SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily D member 1 (SWI/SNF complex 60 kDa subunit) (60 kDa BRG-1/Brm associated factor subunit A) (BRG1-associated factor 60A) Length = 476 Score = 45.4 bits (106), Expect = 7e-05 Identities = 20/66 (30%), Positives = 38/66 (57%) Frame = +1 Query: 253 VSPALQAFMGAAEVPRTEAMKRIWAYIKQNNLQDPEDKKIIVCDEKLKALFAGRERVGFL 432 + P L +G R ++ +W YIK + LQDP +++ ++CD+ L+ +F +R+ F Sbjct: 258 LDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFES-QRMKFS 316 Query: 433 EVAKLL 450 E+ + L Sbjct: 317 EIPQRL 322
>SMRD1_MOUSE (Q61466) SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily D member 1 (SWI/SNF complex 60 kDa subunit) (60 kDa BRG-1/Brm associated factor subunit A) (BRG1-associated factor 60A) (D15KZ1 protein) Length = 476 Score = 44.7 bits (104), Expect = 1e-04 Identities = 20/66 (30%), Positives = 38/66 (57%) Frame = +1 Query: 253 VSPALQAFMGAAEVPRTEAMKRIWAYIKQNNLQDPEDKKIIVCDEKLKALFAGRERVGFL 432 + P L +G R ++ +W YIK + LQDP +++ ++CD+ L+ +F +R+ F Sbjct: 258 LDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFES-QRMKFS 316 Query: 433 EVAKLL 450 E+ + L Sbjct: 317 EIPQRL 322
>Y5417_ARATH (Q9FMT4) Protein At5g14170| Length = 534 Score = 41.2 bits (95), Expect = 0.001 Identities = 22/67 (32%), Positives = 34/67 (50%) Frame = +1 Query: 253 VSPALQAFMGAAEVPRTEAMKRIWAYIKQNNLQDPEDKKIIVCDEKLKALFAGRERVGFL 432 +S AL +G R + IW Y+K LQ+P D CD L+ +F G E++ F Sbjct: 321 LSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVF-GEEKLKFT 379 Query: 433 EVAKLLS 453 V++ +S Sbjct: 380 MVSQKIS 386
>SMRD2_RAT (O54772) SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily D member 2 (60 kDa BRG-1/Brm-associated factor subunit B) (BRG1-associated factor 60B) Length = 456 Score = 39.3 bits (90), Expect = 0.005 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Frame = +1 Query: 253 VSPALQAFMGAAEVPRTEAMKRIWAYIKQNNLQDPEDKKIIVCDEKLKALFA-GRER 420 + P L +G R M+ +W YIK N LQD +++ I C+ + +F+ GR R Sbjct: 238 LDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLR 294
>SMRD2_MOUSE (Q99JR8) SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily D member 2 (60 kDa BRG-1/Brm-associated factor subunit B) (BRG1-associated factor 60B) Length = 456 Score = 39.3 bits (90), Expect = 0.005 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Frame = +1 Query: 253 VSPALQAFMGAAEVPRTEAMKRIWAYIKQNNLQDPEDKKIIVCDEKLKALFA-GRER 420 + P L +G R M+ +W YIK N LQD +++ I C+ + +F+ GR R Sbjct: 238 LDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLR 294
>SMRD2_HUMAN (Q92925) SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily D member 2 (60 kDa BRG-1/Brm-associated factor subunit B) (BRG1-associated factor 60B) Length = 456 Score = 39.3 bits (90), Expect = 0.005 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Frame = +1 Query: 253 VSPALQAFMGAAEVPRTEAMKRIWAYIKQNNLQDPEDKKIIVCDEKLKALFA-GRER 420 + P L +G R M+ +W YIK N LQD +++ I C+ + +F+ GR R Sbjct: 238 LDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLR 294
>SMRD3_MOUSE (Q6P9Z1) SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily D member 3 (60 kDa BRG-1/Brm-associated factor subunit C) (BRG1-associated factor 60C) (mBAF60c) Length = 483 Score = 37.4 bits (85), Expect = 0.018 Identities = 20/67 (29%), Positives = 35/67 (52%) Frame = +1 Query: 253 VSPALQAFMGAAEVPRTEAMKRIWAYIKQNNLQDPEDKKIIVCDEKLKALFAGRERVGFL 432 + P L +G R+ ++ +W Y+K N LQD DK+ I D+ + +F R+ F Sbjct: 265 LDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIF-DCPRLKFS 323 Query: 433 EVAKLLS 453 E+ + L+ Sbjct: 324 EIPQRLT 330
>SMRD3_HUMAN (Q6STE5) SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily D member 3 (60 kDa BRG-1/Brm-associated factor subunit C) (BRG1-associated factor 60C) Length = 483 Score = 37.4 bits (85), Expect = 0.018 Identities = 20/67 (29%), Positives = 35/67 (52%) Frame = +1 Query: 253 VSPALQAFMGAAEVPRTEAMKRIWAYIKQNNLQDPEDKKIIVCDEKLKALFAGRERVGFL 432 + P L +G R+ ++ +W Y+K N LQD DK+ I D+ + +F R+ F Sbjct: 265 LDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIF-DCPRLKFS 323 Query: 433 EVAKLLS 453 E+ + L+ Sbjct: 324 EIPQRLT 330
>Y5843_ARATH (Q9FT92) Protein At5g08430| Length = 553 Score = 34.7 bits (78), Expect = 0.11 Identities = 16/41 (39%), Positives = 23/41 (56%) Frame = +1 Query: 292 VPRTEAMKRIWAYIKQNNLQDPEDKKIIVCDEKLKALFAGR 414 + R + I YI + L DP +KK +VCD++L LF R Sbjct: 52 ISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFGTR 92
>NEB2_RAT (O35274) Neurabin-2 (Neurabin-II) (Spinophilin) (Protein| phosphatase 1 regulatory subunit 9B) (Neural tissue-specific F-actin-binding protein II) (p130) (PP1bp134) Length = 817 Score = 29.3 bits (64), Expect = 4.8 Identities = 15/44 (34%), Positives = 20/44 (45%) Frame = +3 Query: 12 PKRNPHAEATQEKRPPNGGRIHAHHRLLPSRSPPSVGLLRAAAP 143 P P +A EK GG+ HR+ P+R PP +R P Sbjct: 256 PPPAPSGDAATEKDRGPGGQQPPQHRVAPARPPPKPREVRKIKP 299
>NEB2_MOUSE (Q6R891) Neurabin-2 (Neurabin-II) (Spinophilin) (Protein| phosphatase 1 regulatory subunit 9B) Length = 817 Score = 28.5 bits (62), Expect = 8.2 Identities = 14/44 (31%), Positives = 19/44 (43%) Frame = +3 Query: 12 PKRNPHAEATQEKRPPNGGRIHAHHRLLPSRSPPSVGLLRAAAP 143 P P + EK GG+ HR+ P+R PP +R P Sbjct: 256 PPPAPSGDGATEKERGPGGQQPPQHRVAPARPPPKPREVRKIKP 299
>CEAMA_MOUSE (Q61400) Carcinoembryonic antigen-related cell adhesion molecule 10| precursor (Carcinoembryonic antigen 10) (CEA10) Length = 265 Score = 28.5 bits (62), Expect = 8.2 Identities = 13/28 (46%), Positives = 15/28 (53%) Frame = +3 Query: 57 PNGGRIHAHHRLLPSRSPPSVGLLRAAA 140 P R H H LLPS SPP+ G + A Sbjct: 133 PISVRFHVHPSLLPSLSPPTTGQVTVEA 160 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,102,682 Number of Sequences: 219361 Number of extensions: 811898 Number of successful extensions: 2632 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2506 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2632 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2793557952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
