Clone Information

BLAST Search Result

Clone Name	bast76d06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_469857.1\| Oryza sativa (japonica cultivar-group), mRNA	210	3e-51
2	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	125	1e-25
3	gb\|AC084282.6\| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genom...	125	1e-25
4	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	125	1e-25
5	gb\|BT016629.1\| Zea mays clone Contig462 mRNA sequence	54	4e-04
6	gb\|AY109814.1\| Zea mays CL4541_1 mRNA sequence	54	4e-04
7	ref\|XM_505595.1\| Yarrowia lipolytica CLIB122, YALI0F18810g predi...	44	0.39
8	ref\|NM_134462.1\| Rattus norvegicus ATPase, Ca++ transporting, ty...	44	0.39
9	gb\|AF484685.1\| Rattus norvegicus putative secretory pathway Ca-A...	44	0.39
10	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.39
11	dbj\|AP005594.3\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.39
12	emb\|CR382132.1\| Yarrowia lipolytica chromosome F of strain CLIB1...	44	0.39
13	ref\|XM_369024.1\| Magnaporthe grisea 70-15 chromosome VI hypothet...	42	1.5
14	gb\|CP000125.1\| Burkholderia pseudomallei 1710b chromosome II, co...	42	1.5
15	gb\|CP000271.1\| Burkholderia xenovorans LB400 chromosome 2, compl...	42	1.5
16	emb\|CR555306.1\| Azoarcus sp. EbN1 complete genome	42	1.5
17	emb\|BX571966.1\| Burkholderia pseudomallei strain K96243, chromos...	42	1.5
18	gb\|CP000011.2\| Burkholderia mallei ATCC 23344 chromosome 2, comp...	42	1.5
19	gb\|AE015451.1\| Pseudomonas putida KT2440 complete genome	42	1.5
20	gb\|AC113321.19\| Mus musculus chromosome 3, clone RP23-445D13, co...	40	6.1
21	gb\|AC110575.18\| Mus musculus chromosome 3, clone RP23-326B21, co...	40	6.1
22	gb\|CP000094.1\| Pseudomonas fluorescens PfO-1, complete genome	40	6.1
23	ref\|XM_614775.2\| PREDICTED: Bos taurus similar to UDP-Gal:betaGa...	40	6.1
24	ref\|XM_953617.1\| Neurospora crassa OR74A hypothetical protein (N...	40	6.1
25	ref\|XM_330293.1\| Neurospora crassa OR74A hypothetical protein (N...	40	6.1
26	gb\|CP000285.1\| Chromohalobacter salexigens DSM 3043, complete ge...	40	6.1
27	ref\|XM_883455.1\| Leishmania major strain Friedlin hypothetical p...	40	6.1
28	emb\|AL139794.3\|LMFLCHR4B Leishmania major Friedlin chromosome 4,...	40	6.1
29	gb\|BC114740.1\| Bos taurus cDNA clone MGC:137807 IMAGE:8082734, c...	40	6.1
30	emb\|AL450487.17\| Human DNA sequence from clone RP11-314A15 on ch...	40	6.1
31	ref\|XM_777088.1\| PREDICTED: Strongylocentrotus purpuratus simila...	40	6.1
32	gb\|CP000301.1\| Rhodopseudomonas palustris BisB18, complete genome	40	6.1
33	gb\|AC108099.2\| Homo sapiens chromosome 5 clone RP11-112L7, compl...	40	6.1
34	gb\|CP000116.1\| Thiobacillus denitrificans ATCC 25259, complete g...	40	6.1
35	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.1
36	gb\|AC012508.10\| Homo sapiens BAC clone RP11-521O16 from 2, compl...	40	6.1
37	gb\|AF329401.2\| Neurospora crassa UVS-3 (uvs-3) gene, partial cds	40	6.1
38	dbj\|AP005098.4\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.1
39	gb\|AC153816.4\| Mus musculus BAC RP23-8N6 (Roswell Park Cancer I...	40	6.1
40	gb\|U84003.1\|HSTSBIN5 Homo sapiens bridging integrator protein-1 ...	40	6.1
41	gb\|AE000511.1\| Helicobacter pylori 26695, complete genome	40	6.1
42	emb\|AL591542.20\| Mouse DNA sequence from clone RP23-321M14 on ch...	40	6.1
43	gb\|CP000172.1\| Drosophila melanogaster genomic scaffold 21100002...	40	6.1
44	emb\|AL929585.11\| Mouse DNA sequence from clone RP23-97O7 on chro...	40	6.1

>ref|XM_469857.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 435

 Score =  210 bits (106), Expect = 3e-51
 Identities = 205/238 (86%)
 Strand = Plus / Plus

                                                                       
Query: 214 aagaagagggcggcgaccggcatcacgattccccggcccgtgtccccggcgctgcaggcg 273
           |||||||||||||| |||||  | ||||  ||||||| |||||| |||||||||||||||
Sbjct: 178 aagaagagggcggccaccgggctgacgaagccccggctcgtgtctccggcgctgcaggcg 237

                                                                       
Query: 274 ttcatgggcgccgccgaggtcccccgcaccgaggccatgaagcgcatctgggcctacatc 333
            |  |||| ||||| ||| ||||||||||||||||  | |||||| ||||||||||||||
Sbjct: 238 gtggtgggagccgcggagatcccccgcaccgaggcgctcaagcgcctctgggcctacatc 297

                                                                       
Query: 334 aagcagaacaacctccaggaccctgaggacaagaagatcatcgtgtgcgacgagaagctg 393
           |||||| ||||||||||||| |||| |||||||||| | |||||||| || |||||||||
Sbjct: 298 aagcagcacaacctccaggatcctgcggacaagaaggtgatcgtgtgtgatgagaagctg 357

                                                                     
Query: 394 aaagccctgtttgcaggccgagagcgtgttgggttcctggaggttgccaagcttctga 451
           || | ||||||||| |||| |||||| || || ||||||||||| |||||||||||||
Sbjct: 358 aaggtcctgtttgctggccaagagcgcgtgggattcctggaggtcgccaagcttctga 415

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  125 bits (63), Expect = 1e-25
 Identities = 120/139 (86%)
 Strand = Plus / Minus

                                                                            
Query: 214      aagaagagggcggcgaccggcatcacgattccccggcccgtgtccccggcgctgcaggcg 273
                |||||||||||||| |||||  | ||||  ||||||| |||||| |||||||||||||||
Sbjct: 31167616 aagaagagggcggccaccgggctgacgaagccccggctcgtgtctccggcgctgcaggcg 31167557

                                                                            
Query: 274      ttcatgggcgccgccgaggtcccccgcaccgaggccatgaagcgcatctgggcctacatc 333
                 |  |||| ||||| ||| ||||||||||||||||  | |||||| ||||||||||||||
Sbjct: 31167556 gtggtgggagccgcggagatcccccgcaccgaggcgctcaagcgcctctgggcctacatc 31167497

                                   
Query: 334      aagcagaacaacctccagg 352
                |||||| ||||||||||||
Sbjct: 31167496 aagcagcacaacctccagg 31167478



 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 91/105 (86%)
 Strand = Plus / Minus

                                                                            
Query: 347      tccaggaccctgaggacaagaagatcatcgtgtgcgacgagaagctgaaagccctgtttg 406
                ||||||| |||| |||||||||| | |||||||| || ||||||||||| | ||||||||
Sbjct: 31166425 tccaggatcctgcggacaagaaggtgatcgtgtgtgatgagaagctgaaggtcctgtttg 31166366

                                                             
Query: 407      caggccgagagcgtgttgggttcctggaggttgccaagcttctga 451
                | |||| |||||| || || ||||||||||| |||||||||||||
Sbjct: 31166365 ctggccaagagcgcgtgggattcctggaggtcgccaagcttctga 31166321

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>gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genomic sequence, complete
             sequence
          Length = 128017

 Score =  125 bits (63), Expect = 1e-25
 Identities = 120/139 (86%)
 Strand = Plus / Minus

                                                                         
Query: 214   aagaagagggcggcgaccggcatcacgattccccggcccgtgtccccggcgctgcaggcg 273
             |||||||||||||| |||||  | ||||  ||||||| |||||| |||||||||||||||
Sbjct: 88257 aagaagagggcggccaccgggctgacgaagccccggctcgtgtctccggcgctgcaggcg 88198

                                                                         
Query: 274   ttcatgggcgccgccgaggtcccccgcaccgaggccatgaagcgcatctgggcctacatc 333
              |  |||| ||||| ||| ||||||||||||||||  | |||||| ||||||||||||||
Sbjct: 88197 gtggtgggagccgcggagatcccccgcaccgaggcgctcaagcgcctctgggcctacatc 88138

                                
Query: 334   aagcagaacaacctccagg 352
             |||||| ||||||||||||
Sbjct: 88137 aagcagcacaacctccagg 88119



 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 91/105 (86%)
 Strand = Plus / Minus

                                                                         
Query: 347   tccaggaccctgaggacaagaagatcatcgtgtgcgacgagaagctgaaagccctgtttg 406
             ||||||| |||| |||||||||| | |||||||| || ||||||||||| | ||||||||
Sbjct: 87066 tccaggatcctgcggacaagaaggtgatcgtgtgtgatgagaagctgaaggtcctgtttg 87007

                                                          
Query: 407   caggccgagagcgtgttgggttcctggaggttgccaagcttctga 451
             | |||| |||||| || || ||||||||||| |||||||||||||
Sbjct: 87006 ctggccaagagcgcgtgggattcctggaggtcgccaagcttctga 86962

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  125 bits (63), Expect = 1e-25
 Identities = 120/139 (86%)
 Strand = Plus / Minus

                                                                            
Query: 214      aagaagagggcggcgaccggcatcacgattccccggcccgtgtccccggcgctgcaggcg 273
                |||||||||||||| |||||  | ||||  ||||||| |||||| |||||||||||||||
Sbjct: 31258139 aagaagagggcggccaccgggctgacgaagccccggctcgtgtctccggcgctgcaggcg 31258080

                                                                            
Query: 274      ttcatgggcgccgccgaggtcccccgcaccgaggccatgaagcgcatctgggcctacatc 333
                 |  |||| ||||| ||| ||||||||||||||||  | |||||| ||||||||||||||
Sbjct: 31258079 gtggtgggagccgcggagatcccccgcaccgaggcgctcaagcgcctctgggcctacatc 31258020

                                   
Query: 334      aagcagaacaacctccagg 352
                |||||| ||||||||||||
Sbjct: 31258019 aagcagcacaacctccagg 31258001



 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 91/105 (86%)
 Strand = Plus / Minus

                                                                            
Query: 347      tccaggaccctgaggacaagaagatcatcgtgtgcgacgagaagctgaaagccctgtttg 406
                ||||||| |||| |||||||||| | |||||||| || ||||||||||| | ||||||||
Sbjct: 31256948 tccaggatcctgcggacaagaaggtgatcgtgtgtgatgagaagctgaaggtcctgtttg 31256889

                                                             
Query: 407      caggccgagagcgtgttgggttcctggaggttgccaagcttctga 451
                | |||| |||||| || || ||||||||||| |||||||||||||
Sbjct: 31256888 ctggccaagagcgcgtgggattcctggaggtcgccaagcttctga 31256844

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>gb|BT016629.1| Zea mays clone Contig462 mRNA sequence
          Length = 784

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                      
Query: 295 ccccgcaccgaggccatgaagcgcatctgggcctacatcaagcagaacaacctccagga 353
           ||||||||||||| | | |||||| |||||||||| |||||| || | |||||||||||
Sbjct: 330 ccccgcaccgaggtcctcaagcgcctctgggcctatatcaaggagcataacctccagga 388

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>gb|AY109814.1| Zea mays CL4541_1 mRNA sequence
          Length = 688

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                      
Query: 295 ccccgcaccgaggccatgaagcgcatctgggcctacatcaagcagaacaacctccagga 353
           ||||||||||||| | | |||||| |||||||||| |||||| || | |||||||||||
Sbjct: 133 ccccgcaccgaggtcctcaagcgcctctgggcctatatcaaggagcataacctccagga 191

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>ref|XM_505595.1| Yarrowia lipolytica CLIB122, YALI0F18810g predicted mRNA
          Length = 1344

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 423 tgggttcctggaggttgccaag 444
           ||||||||||||||||||||||
Sbjct: 963 tgggttcctggaggttgccaag 984

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>ref|NM_134462.1| Rattus norvegicus ATPase, Ca++ transporting, type 2C, member 2
            (Atp2c2), mRNA
          Length = 3116

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 377  tgtgcgacgagaagctgaaagc 398
            ||||||||||||||||||||||
Sbjct: 1941 tgtgcgacgagaagctgaaagc 1962

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>gb|AF484685.1| Rattus norvegicus putative secretory pathway Ca-ATPase SPCA2 (Atp2C2)
            mRNA, complete cds
          Length = 3116

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 377  tgtgcgacgagaagctgaaagc 398
            ||||||||||||||||||||||
Sbjct: 1941 tgtgcgacgagaagctgaaagc 1962

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                         
Query: 214     aagaagagggcggcgaccggcatcacgattccccggcccgtgtccccggcgctgcagg 271
               ||||||||||||||||| ||  | | ||  |||||||||||||| |||||| ||||||
Sbjct: 5761696 aagaagagggcggcgacgggactgatgaagccccggcccgtgtcgccggcgttgcagg 5761639

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>dbj|AP005594.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0701E06
          Length = 123415

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                       
Query: 214   aagaagagggcggcgaccggcatcacgattccccggcccgtgtccccggcgctgcagg 271
             ||||||||||||||||| ||  | | ||  |||||||||||||| |||||| ||||||
Sbjct: 57901 aagaagagggcggcgacgggactgatgaagccccggcccgtgtcgccggcgttgcagg 57844

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>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica
          Length = 4003362

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 423     tgggttcctggaggttgccaag 444
               ||||||||||||||||||||||
Sbjct: 2511397 tgggttcctggaggttgccaag 2511376

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>ref|XM_369024.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein
           (MG00220.4) partial mRNA
          Length = 1083

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 117 gtcggcctccttcgcgcggctgcgc 141
           |||||||||||| ||||||||||||
Sbjct: 654 gtcggcctccttggcgcggctgcgc 630

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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 129     cgcgcggctgcgccgcgcagc 149
               |||||||||||||||||||||
Sbjct: 1285351 cgcgcggctgcgccgcgcagc 1285371

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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 158     ccgccgtggtcgtgcgcgccg 178
               |||||||||||||||||||||
Sbjct: 2847968 ccgccgtggtcgtgcgcgccg 2847988

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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 157     gccgccgtggtcgtgcgcgcc 177
               |||||||||||||||||||||
Sbjct: 2117337 gccgccgtggtcgtgcgcgcc 2117357

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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 129     cgcgcggctgcgccgcgcagc 149
               |||||||||||||||||||||
Sbjct: 2602700 cgcgcggctgcgccgcgcagc 2602720

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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 129    cgcgcggctgcgccgcgcagc 149
              |||||||||||||||||||||
Sbjct: 157409 cgcgcggctgcgccgcgcagc 157389

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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 258     cccggcgctgcaggcgttcat 278
               |||||||||||||||||||||
Sbjct: 5457103 cccggcgctgcaggcgttcat 5457123

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>gb|AC113321.19| Mus musculus chromosome 3, clone RP23-445D13, complete sequence
          Length = 182156

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 89     tcttctcccctctcgctctcctcc 112
              |||||||||||||| |||||||||
Sbjct: 103896 tcttctcccctctctctctcctcc 103873

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>gb|AC110575.18| Mus musculus chromosome 3, clone RP23-326B21, complete sequence
          Length = 176678

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 89     tcttctcccctctcgctctcctcc 112
              |||||||||||||| |||||||||
Sbjct: 125753 tcttctcccctctctctctcctcc 125730

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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 69      cgcatccatgctcaccaccg 88
               ||||||||||||||||||||
Sbjct: 4570314 cgcatccatgctcaccaccg 4570333

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>ref|XM_614775.2| PREDICTED: Bos taurus similar to UDP-Gal:betaGal beta
           1,3-galactosyltransferase polypeptide 7 (LOC534859),
           mRNA
          Length = 1443

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 191 cagccgcggcggcggccccc 210
           ||||||||||||||||||||
Sbjct: 420 cagccgcggcggcggccccc 401

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>ref|XM_953617.1| Neurospora crassa OR74A hypothetical protein (NCU09644.1) partial
            mRNA
          Length = 2910

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 140  gccgcgcagctcccactgccgccg 163
            ||||||||||||||| ||||||||
Sbjct: 2609 gccgcgcagctcccaatgccgccg 2632

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>ref|XM_330293.1| Neurospora crassa OR74A hypothetical protein (NCU09644.1) partial
            mRNA
          Length = 2910

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 140  gccgcgcagctcccactgccgccg 163
            ||||||||||||||| ||||||||
Sbjct: 2609 gccgcgcagctcccaatgccgccg 2632

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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 302     ccgaggccatgaagcgcatc 321
               ||||||||||||||||||||
Sbjct: 3594735 ccgaggccatgaagcgcatc 3594754

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>ref|XM_883455.1| Leishmania major strain Friedlin hypothetical protein (L3291.01)
            partial mRNA
          Length = 9192

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 187  tctacagccgcggcggcggc 206
            ||||||||||||||||||||
Sbjct: 9044 tctacagccgcggcggcggc 9025

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>emb|AL139794.3|LMFLCHR4B Leishmania major Friedlin chromosome 4, right end
          Length = 247462

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 187   tctacagccgcggcggcggc 206
             ||||||||||||||||||||
Sbjct: 18041 tctacagccgcggcggcggc 18060

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>gb|BC114740.1| Bos taurus cDNA clone MGC:137807 IMAGE:8082734, complete cds
          Length = 2532

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 249 gcccgtgtccccggcgctgc 268
           ||||||||||||||||||||
Sbjct: 493 gcccgtgtccccggcgctgc 512

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>emb|AL450487.17| Human DNA sequence from clone RP11-314A15 on chromosome Xq12-13.3
             Contains a eukaryotic translation termination factor 1
             (ETF1) pseudogene, a cyclin fold protein 1 (CFP1)
             pseudogene and a CpG island, complete sequence
          Length = 159093

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 388   aagctgaaagccctgtttgc 407
             ||||||||||||||||||||
Sbjct: 46429 aagctgaaagccctgtttgc 46448

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>ref|XM_777088.1| PREDICTED: Strongylocentrotus purpuratus similar to acheron
            (LOC576820), mRNA
          Length = 1611

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 344  acctccaggaccctgaggac 363
            ||||||||||||||||||||
Sbjct: 1557 acctccaggaccctgaggac 1538

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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 279     gggcgccgccgaggtcccccgcaccgag 306
               ||||||||||||| ||| ||||||||||
Sbjct: 5416616 gggcgccgccgagatccgccgcaccgag 5416589

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>gb|AC108099.2| Homo sapiens chromosome 5 clone RP11-112L7, complete sequence
          Length = 172945

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 91     ttctcccctctcgctctcct 110
              ||||||||||||||||||||
Sbjct: 106937 ttctcccctctcgctctcct 106956

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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 126     cttcgcgcggctgcgccgcgcagc 149
               ||||| ||||||||||||||||||
Sbjct: 2274154 cttcgtgcggctgcgccgcgcagc 2274131

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 106     ctcctccgtccgtcggcctccttc 129
               |||||||||||||| |||||||||
Sbjct: 6039110 ctcctccgtccgtctgcctccttc 6039133

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>gb|AC012508.10| Homo sapiens BAC clone RP11-521O16 from 2, complete sequence
          Length = 185967

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 345   cctccaggaccctgaggaca 364
             ||||||||||||||||||||
Sbjct: 88731 cctccaggaccctgaggaca 88750

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>gb|AF329401.2| Neurospora crassa UVS-3 (uvs-3) gene, partial cds
          Length = 5597

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 140  gccgcgcagctcccactgccgccg 163
            ||||||||||||||| ||||||||
Sbjct: 4920 gccgcgcagctcccaatgccgccg 4943

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>dbj|AP005098.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0008C11
          Length = 157205

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 106   ctcctccgtccgtcggcctccttc 129
             |||||||||||||| |||||||||
Sbjct: 94280 ctcctccgtccgtctgcctccttc 94303

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>gb|AC153816.4| Mus musculus  BAC RP23-8N6 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 217283

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 338    agaacaacctccaggaccct 357
              ||||||||||||||||||||
Sbjct: 143497 agaacaacctccaggaccct 143516

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>gb|U84003.1|HSTSBIN5 Homo sapiens bridging integrator protein-1 (BIN1) gene, exons 7-12
          Length = 8310

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 345 cctccaggaccctgaggaca 364
           ||||||||||||||||||||
Sbjct: 503 cctccaggaccctgaggaca 484

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>gb|AE000511.1| Helicobacter pylori 26695, complete genome
          Length = 1667867

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 13     caaagagaaacccccacgcc 32
              ||||||||||||||||||||
Sbjct: 257126 caaagagaaacccccacgcc 257145

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>emb|AL591542.20| Mouse DNA sequence from clone RP23-321M14 on chromosome 2, complete
             sequence
          Length = 197190

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 340   aacaacctccaggaccctga 359
             ||||||||||||||||||||
Sbjct: 32670 aacaacctccaggaccctga 32689

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>gb|CP000172.1| Drosophila melanogaster genomic scaffold 211000022279629
          Length = 55390

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 89    tcttctcccctctcgctctcctcc 112
             ||||||| ||||||||||||||||
Sbjct: 17404 tcttctctcctctcgctctcctcc 17381

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>emb|AL929585.11| Mouse DNA sequence from clone RP23-97O7 on chromosome 4, complete
             sequence
          Length = 246011

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 79    ctcaccaccgtcttctcccc 98
             ||||||||||||||||||||
Sbjct: 43001 ctcaccaccgtcttctcccc 42982


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,801,891
Number of Sequences: 3902068
Number of extensions: 3801891
Number of successful extensions: 78756
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77555
Number of HSP's gapped (non-prelim): 1199
length of query: 454
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 432
effective length of database: 17,147,199,772
effective search space: 7407590301504
effective search space used: 7407590301504
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result