>POLN_RUBVT (P13889) Nonstructural polyprotein [Contains: Protease (EC|
           3.4.22.-) (p150); RNA-directed RNA polymerase/helicase
           (EC 2.7.7.48) (EC 3.6.1.-) (p90)]
          Length = 2115

 Score = 35.0 bits (79), Expect = 0.057
 Identities = 18/30 (60%), Positives = 21/30 (70%)
 Frame = +1

Query: 19  AHVAGRTWQSDQRIAGRFCGNATAADSLSV 108
           A+VA R WQS+ R+AG   G   AADSLSV
Sbjct: 388 AYVAFRAWQSNARLAGIMKGAKCAADSLSV 417

>POLN_RUBVM (Q86500) Nonstructural polyprotein [Contains: Protease (EC|
           3.4.22.-) (p150); RNA-directed RNA polymerase/helicase
           (EC 2.7.7.48) (EC 3.6.1.-) (p90)]
          Length = 2115

 Score = 29.6 bits (65), Expect = 2.4
 Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 19  AHVAGRTWQSDQRIAGRF-CGNATAADSLSV 108
           A+VA R WQS+ R+AG        AADSLSV
Sbjct: 388 AYVAFRAWQSNARLAGIMKSAKRCAADSLSV 418


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,107,516
Number of Sequences: 219361
Number of extensions: 248573
Number of successful extensions: 934
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 80,573,946
effective HSP length: 26
effective length of database: 74,870,560
effective search space used: 1796893440
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)