ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast76b10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RM27_CRYNE (P46288) 60S ribosomal protein L27, mitochondrial pre... 30 2.5
2ACON_CORGL (Q8NQ98) Aconitate hydratase (EC 4.2.1.3) 29 5.5
3ACON_MYCAV (O08451) Aconitate hydratase (EC 4.2.1.3) (Citrate hy... 29 5.5
4CR14_HORVU (P26154) Cold-regulated protein BLT14 29 7.2

>RM27_CRYNE (P46288) 60S ribosomal protein L27, mitochondrial precursor|
          Length = 183

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = -1

Query: 120 FAGIPRLVALVQVRDAVAAFGGQEKRSREMAG 25
           FAG   L + +QVR A  A GG+ K  RE AG
Sbjct: 20  FAGPSSLASQIQVRWASKAAGGKSKNGRESAG 51



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>ACON_CORGL (Q8NQ98) Aconitate hydratase (EC 4.2.1.3)|
          Length = 939

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = -1

Query: 156 EGEASPA-VIEGSFAGIPRLVALVQVRDAVAAFGG 55
           E + +PA V+   F G+P +V L  +R+AVAA GG
Sbjct: 75  EIQFTPARVLMQDFTGVPCVVDLATMREAVAALGG 109



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>ACON_MYCAV (O08451) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)|
           (Aconitase)
          Length = 961

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -1

Query: 156 EGEASPA-VIEGSFAGIPRLVALVQVRDAVAAFGGQEKRSREMA 28
           E + +PA V+   F G+P +V L  +R+A+A  GG  ++   +A
Sbjct: 102 EIQYTPARVVMQDFTGVPCIVDLATMREAIADLGGNPEKVNPLA 145



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>CR14_HORVU (P26154) Cold-regulated protein BLT14|
          Length = 88

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 91  GASEGRCRCVRWTREEIEGDGWVRVG*N 8
           G S+ RCRC RW R  ++G G    G N
Sbjct: 27  GCSDTRCRCQRW-RRRLQGFGLAAAGGN 53


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,965,606
Number of Sequences: 219361
Number of extensions: 725643
Number of successful extensions: 2436
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2436
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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