ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast76b10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC136217.4| Oryza sativa (japonica cultivar-group) chromosome... 44 0.41
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.41
3ref|NM_173902.2| Bos taurus clusterin (CLU), mRNA 44 0.41
4dbj|AK121601.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.41
5dbj|AK059614.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.41
6gb|AC144455.5| Oryza sativa (japonica cultivar-group) chromosome... 44 0.41
7gb|J05391.1|BOVGPIII Bovine glycoprotein III (GpIII) mRNA, compl... 44 0.41
8emb|AL365401.20| Human DNA sequence from clone RP11-489M19 on ch... 42 1.6
9emb|AL158043.14| Human DNA sequence from clone RP11-5N23 on chro... 42 1.6
10gb|AC092849.4| Homo sapiens BAC clone RP11-758P17 from 7, comple... 42 1.6
11gb|AC010956.12|AC010956 Homo sapiens, clone RP11-5N23, complete ... 42 1.6
12ref|NM_114402.1| Arabidopsis thaliana kinase AT3G45330 mRNA, com... 40 6.4
13gb|AY830138.1| Ipomoea batatas cultivar Beauregard clone BAC117E... 40 6.4
14gb|AC138214.8| Mus musculus chromosome 1, clone RP23-404A6, comp... 40 6.4
15ref|XM_868540.1| PREDICTED: Bos taurus similar to cytoskeleton-a... 40 6.4
16gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 6.4
17gb|AC044804.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 6.4
18gb|AC134548.5| Mus musculus BAC clone RP24-258K6 from chromosome... 40 6.4
19gb|AC122910.5| Mus musculus BAC clone RP23-54P3 from chromosome ... 40 6.4
20gb|AC122847.4| Mus musculus BAC clone RP23-163F2 from 6, complet... 40 6.4
21gb|AC125353.2| Mus musculus BAC clone RP23-455B17 from 6, comple... 40 6.4
22ref|XM_795582.1| PREDICTED: Strongylocentrotus purpuratus hypoth... 40 6.4
23emb|AL049576.19|HSJ583K24 Human DNA sequence from clone RP4-583K... 40 6.4
24emb|AL050321.11|HSJ717M23 Human DNA sequence from clone RP4-717M... 40 6.4
25emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 6.4
26emb|AL662959.3|OSJN00160 Oryza sativa genomic DNA, chromosome 4,... 40 6.4
27emb|AL132953.2|ATF18N11 Arabidopsis thaliana DNA chromosome 3, B... 40 6.4
28ref|NM_169871.1| Drosophila melanogaster CG6184-RC, transcript v... 40 6.4
29ref|NM_169870.1| Drosophila melanogaster CG6184-RB, transcript v... 40 6.4
30ref|NM_142567.1| Drosophila melanogaster CG6184-RA, transcript v... 40 6.4
31gb|AC092171.4| Homo sapiens BAC clone RP11-1275H24 from 7, compl... 40 6.4
32gb|AF333763.1| Caretta caretta clone Ccar176 microsatellite sequ... 40 6.4
33gb|AC159299.2| Mus musculus BAC clone RP23-241K11 from chromosom... 40 6.4
34dbj|AK007532.1| Mus musculus 10 day old male pancreas cDNA, RIKE... 40 6.4
35dbj|AK017195.1| Mus musculus 11 days pregnant adult female ovary... 40 6.4
36dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
37gb|AC007815.7|AC007815 Drosophila melanogaster, chromosome 3R, r... 40 6.4
38gb|AC154561.2| Mus musculus BAC clone RP23-400M17 from chromosom... 40 6.4
39gb|AC008744.6|AC008744 Homo sapiens chromosome 19 clone CTD-2561... 40 6.4
40ref|NM_025453.1| Mus musculus transmembrane 4 L six family membe... 40 6.4
41gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome 40 6.4
42dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 6.4
43dbj|AK101059.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.4
44emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromo... 40 6.4
45dbj|AK064765.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.4
46emb|CR749752.5| Zebrafish DNA sequence from clone DKEY-228A15 in... 40 6.4
47dbj|AK064159.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.4
48gb|AE003727.3| Drosophila melanogaster chromosome 3R, section 65... 40 6.4
49emb|CR942773.1| Xenopus tropicalis finished cDNA, clone TEgg092p04 40 6.4
50emb|AL583722.6|CNS07EFU Human chromosome 14 DNA sequence BAC R-9... 40 6.4
51gb|AC139317.4| Mus musculus BAC clone RP24-495N6 from 15, comple... 40 6.4
52gb|AY858986.1| Chlamydomonas incerta minus agglutinin (SAD1) gen... 40 6.4 
>gb|AC136217.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0030I14, complete sequence
          Length = 159035

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 37    cctcgatctcttctcttgtcca 58
             ||||||||||||||||||||||
Sbjct: 84418 cctcgatctcttctcttgtcca 84439
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 37       cctcgatctcttctcttgtcca 58
                ||||||||||||||||||||||
Sbjct: 29436393 cctcgatctcttctcttgtcca 29436414
to top
>ref|NM_173902.2| Bos taurus clusterin (CLU), mRNA
          Length = 1647

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 181  cctccagcctctccttcctctg 202
            ||||||||||||||||||||||
Sbjct: 1519 cctccagcctctccttcctctg 1540
to top
>dbj|AK121601.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033040P21,
          full insert sequence
          Length = 1459

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 37 cctcgatctcttctcttgtcca 58
          ||||||||||||||||||||||
Sbjct: 37 cctcgatctcttctcttgtcca 58
to top
>dbj|AK059614.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-F12,
          full insert sequence
          Length = 901

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 37 cctcgatctcttctcttgtcca 58
          ||||||||||||||||||||||
Sbjct: 38 cctcgatctcttctcttgtcca 59
to top
>gb|AC144455.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0086G17, complete sequence
          Length = 134631

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 37    cctcgatctcttctcttgtcca 58
             ||||||||||||||||||||||
Sbjct: 20663 cctcgatctcttctcttgtcca 20684
to top
>gb|J05391.1|BOVGPIII Bovine glycoprotein III (GpIII) mRNA, complete cds
          Length = 1647

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 181  cctccagcctctccttcctctg 202
            ||||||||||||||||||||||
Sbjct: 1519 cctccagcctctccttcctctg 1540
to top
>emb|AL365401.20| Human DNA sequence from clone RP11-489M19 on chromosome 20 Contains
             part of the CDH4 gene for retinal cadherin 4 type 1
             (R-cadherin), ESTs, STSs and GSSs, complete sequence
          Length = 108291

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 174   tctgaatcctccagcctctcc 194
             |||||||||||||||||||||
Sbjct: 53805 tctgaatcctccagcctctcc 53825
to top
>emb|AL158043.14| Human DNA sequence from clone RP11-5N23 on chromosome 10p14-15.3
             Contains the 5' end of the PRKCQ gene for protein kinase
             C, theta, a novel gene and a CpG island, complete sequence
          Length = 132741

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 181   cctccagcctctccttcctct 201
             |||||||||||||||||||||
Sbjct: 51374 cctccagcctctccttcctct 51354
to top
>gb|AC092849.4| Homo sapiens BAC clone RP11-758P17 from 7, complete sequence
          Length = 81403

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 150   ccccttcctctgctctgtccc 170
             |||||||||||||||||||||
Sbjct: 15598 ccccttcctctgctctgtccc 15618
to top
>gb|AC010956.12|AC010956 Homo sapiens, clone RP11-5N23, complete sequence
          Length = 163805

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 181   cctccagcctctccttcctct 201
             |||||||||||||||||||||
Sbjct: 82448 cctccagcctctccttcctct 82428
to top
>ref|NM_114402.1| Arabidopsis thaliana kinase AT3G45330 mRNA, complete cds
          Length = 2049

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 185  cagcctctccttcctctgct 204
            ||||||||||||||||||||
Sbjct: 1979 cagcctctccttcctctgct 1998
to top
>gb|AY830138.1| Ipomoea batatas cultivar Beauregard clone BAC117E14, complete sequence
          Length = 99025

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    agccatctccctcgatctct 47
             ||||||||||||||||||||
Sbjct: 16181 agccatctccctcgatctct 16200



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 28   agccatctccctcgatctct 47
            ||||||||||||||||||||
Sbjct: 8391 agccatctccctcgatctct 8410
to top
>gb|AC138214.8| Mus musculus chromosome 1, clone RP23-404A6, complete sequence
          Length = 203478

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 173    ctctgaatcctccagcctct 192
              ||||||||||||||||||||
Sbjct: 112376 ctctgaatcctccagcctct 112395
to top
>ref|XM_868540.1| PREDICTED: Bos taurus similar to cytoskeleton-associated protein 4
           (LOC515784), mRNA
          Length = 3396

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 360 gagcgagagcgggcgggcgg 379
           ||||||||||||||||||||
Sbjct: 337 gagcgagagcgggcgggcgg 318
to top
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 285     ggctgctgcgagcgagcgcgggcg 308
               |||||||||| |||||||||||||
Sbjct: 2385473 ggctgctgcgcgcgagcgcgggcg 2385496
to top
>gb|AC044804.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-15K8, complete
              sequence
          Length = 253000

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 167    tcccctctctgaatcctccagcctctcc 194
              ||||||| ||| ||||||||||||||||
Sbjct: 221551 tcccctccctgcatcctccagcctctcc 221578
to top
>gb|AC134548.5| Mus musculus BAC clone RP24-258K6 from chromosome 15, complete
            sequence
          Length = 177331

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 227  gcgagcaagcgcgggcgggcggcg 250
            ||||||||||||| ||||||||||
Sbjct: 2964 gcgagcaagcgcgcgcgggcggcg 2987
to top
>gb|AC122910.5| Mus musculus BAC clone RP23-54P3 from chromosome 6, complete sequence
          Length = 221390

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 185   cagcctctccttcctctgct 204
             ||||||||||||||||||||
Sbjct: 36271 cagcctctccttcctctgct 36252
to top
>gb|AC122847.4| Mus musculus BAC clone RP23-163F2 from 6, complete sequence
          Length = 193343

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 167    tcccctctctgaatcctccagcctctcc 194
              ||||||| ||| ||||||||||||||||
Sbjct: 133492 tcccctccctgcatcctccagcctctcc 133465
to top
>gb|AC125353.2| Mus musculus BAC clone RP23-455B17 from 6, complete sequence
          Length = 171963

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 185   cagcctctccttcctctgct 204
             ||||||||||||||||||||
Sbjct: 22666 cagcctctccttcctctgct 22685
to top
>ref|XM_795582.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein
           LOC591848 (LOC591848), partial mRNA
          Length = 552

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 182 ctccagcctctccttcctctgctc 205
           |||| |||||||||||||||||||
Sbjct: 546 ctcctgcctctccttcctctgctc 523
to top
>emb|AL049576.19|HSJ583K24 Human DNA sequence from clone RP4-583K24 on chromosome 1p34.1-36.13
             Contains the 5' end of the LUZP1 gene for leucine zipper
             protein 1, the HTR1D gene for 5-hydroxytryptamine
             (serotonin) receptor 1D and a CpG island, complete
             sequence
          Length = 66539

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 152   ccttcctctgctctgtcccctctc 175
             ||||||||||||||||||| ||||
Sbjct: 43322 ccttcctctgctctgtcccatctc 43345
to top
>emb|AL050321.11|HSJ717M23 Human DNA sequence from clone RP4-717M23 on chromosome 20 Contains the
             CSRP2BP gene for CSRP2 binding protein, a chromosome 7
             open reading frame 24 (C7orf24) pseudogene and two CpG
             islands, complete sequence
          Length = 101589

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 179   atcctccagcctctccttcc 198
             ||||||||||||||||||||
Sbjct: 26736 atcctccagcctctccttcc 26755
to top
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 285     ggctgctgcgagcgagcgcgggcg 308
               |||||||||| |||||||||||||
Sbjct: 1999092 ggctgctgcgcgcgagcgcgggcg 1999069
to top
>emb|AL662959.3|OSJN00160 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019G23,
              complete sequence
          Length = 150305

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 135    ccgccggcgaggcctcccct 154
              ||||||||||||||||||||
Sbjct: 113613 ccgccggcgaggcctcccct 113594
to top
>emb|AL132953.2|ATF18N11 Arabidopsis thaliana DNA chromosome 3, BAC clone F18N11
          Length = 91274

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 185   cagcctctccttcctctgct 204
             ||||||||||||||||||||
Sbjct: 63158 cagcctctccttcctctgct 63139
to top
>ref|NM_169871.1| Drosophila melanogaster CG6184-RC, transcript variant C (CG6184),
           mRNA
          Length = 3327

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 448 gcgagagtccgctgcgagcg 467
           ||||||||||||||||||||
Sbjct: 875 gcgagagtccgctgcgagcg 894
to top
>ref|NM_169870.1| Drosophila melanogaster CG6184-RB, transcript variant B (CG6184),
           mRNA
          Length = 3300

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 448 gcgagagtccgctgcgagcg 467
           ||||||||||||||||||||
Sbjct: 848 gcgagagtccgctgcgagcg 867
to top
>ref|NM_142567.1| Drosophila melanogaster CG6184-RA, transcript variant A (CG6184),
           mRNA
          Length = 3119

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 448 gcgagagtccgctgcgagcg 467
           ||||||||||||||||||||
Sbjct: 667 gcgagagtccgctgcgagcg 686
to top
>gb|AC092171.4| Homo sapiens BAC clone RP11-1275H24 from 7, complete sequence
          Length = 85132

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 184   ccagcctctccttcctctgc 203
             ||||||||||||||||||||
Sbjct: 20706 ccagcctctccttcctctgc 20725
to top
>gb|AF333763.1| Caretta caretta clone Ccar176 microsatellite sequence
          Length = 652

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 157 ctctgctctgtcccctctct 176
           ||||||||||||||||||||
Sbjct: 57  ctctgctctgtcccctctct 76
to top
>gb|AC159299.2| Mus musculus BAC clone RP23-241K11 from chromosome 6, complete sequence
          Length = 207837

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 167    tcccctctctgaatcctccagcctctcc 194
              ||||||| ||| ||||||||||||||||
Sbjct: 184504 tcccctccctgcatcctccagcctctcc 184531
to top
>dbj|AK007532.1| Mus musculus 10 day old male pancreas cDNA, RIKEN full-length
           enriched library, clone:1810018L02 product:similar to
           CDNA: FLJ22800 FIS, CLONE KAIA2630 [Homo sapiens], full
           insert sequence
          Length = 1505

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 173 ctctgaatcctccagcctct 192
           ||||||||||||||||||||
Sbjct: 961 ctctgaatcctccagcctct 942
to top
>dbj|AK017195.1| Mus musculus 11 days pregnant adult female ovary and uterus cDNA,
           RIKEN full-length enriched library, clone:5033426G15
           product:similar to CDNA: FLJ22800 FIS, CLONE KAIA2630
           [Homo sapiens], full insert sequence
          Length = 1471

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 173 ctctgaatcctccagcctct 192
           ||||||||||||||||||||
Sbjct: 961 ctctgaatcctccagcctct 942
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 135     ccgccggcgaggcctcccct 154
               ||||||||||||||||||||
Sbjct: 4485881 ccgccggcgaggcctcccct 4485862
to top
>gb|AC007815.7|AC007815 Drosophila melanogaster, chromosome 3R, region 92B-92B, BAC clone
             BACR07I18, complete sequence
          Length = 159413

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 448   gcgagagtccgctgcgagcg 467
             ||||||||||||||||||||
Sbjct: 78507 gcgagagtccgctgcgagcg 78488
to top
>gb|AC154561.2| Mus musculus BAC clone RP23-400M17 from chromosome 17, complete sequence
          Length = 191047

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 151    cccttcctctgctctgtcccctct 174
              ||||||||||||||||| ||||||
Sbjct: 140026 cccttcctctgctctgtgccctct 140003
to top
>gb|AC008744.6|AC008744 Homo sapiens chromosome 19 clone CTD-2561O20, complete sequence
          Length = 203200

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 430   gcacgcagggcagctggtgc 449
             ||||||||||||||||||||
Sbjct: 91839 gcacgcagggcagctggtgc 91820
to top
>ref|NM_025453.1| Mus musculus transmembrane 4 L six family member 20 (Tm4sf20), mRNA
          Length = 1505

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 173 ctctgaatcctccagcctct 192
           ||||||||||||||||||||
Sbjct: 961 ctctgaatcctccagcctct 942
to top
>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome
          Length = 3179300

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 212     gtgtgggaggccgctgcgag 231
               ||||||||||||||||||||
Sbjct: 2234070 gtgtgggaggccgctgcgag 2234051
to top
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 299     agcgcgggcgagcggcgcta 318
               ||||||||||||||||||||
Sbjct: 1664551 agcgcgggcgagcggcgcta 1664570
to top
>dbj|AK101059.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033022A10, full
            insert sequence
          Length = 4115

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 132  tcaccgccggcgaggcctcc 151
            ||||||||||||||||||||
Sbjct: 3740 tcaccgccggcgaggcctcc 3721
to top
>emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ia
          Length = 1923819

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 180    tcctccagcctctccttcctctgc 203
              |||||| |||||||||||||||||
Sbjct: 745434 tcctcctgcctctccttcctctgc 745411
to top
>dbj|AK064765.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-H12, full
           insert sequence
          Length = 2274

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 135 ccgccggcgaggcctcccct 154
           ||||||||||||||||||||
Sbjct: 40  ccgccggcgaggcctcccct 59
to top
>emb|CR749752.5| Zebrafish DNA sequence from clone DKEY-228A15 in linkage group 19,
             complete sequence
          Length = 58248

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 62    aacgcagcgacagcgtccct 81
             ||||||||||||||||||||
Sbjct: 15018 aacgcagcgacagcgtccct 15037
to top
>dbj|AK064159.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-103-F07, full
           insert sequence
          Length = 1647

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 135 ccgccggcgaggcctcccct 154
           ||||||||||||||||||||
Sbjct: 54  ccgccggcgaggcctcccct 73
to top
>gb|AE003727.3| Drosophila melanogaster chromosome 3R, section 65 of 118 of the
             complete sequence
          Length = 242618

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 448   gcgagagtccgctgcgagcg 467
             ||||||||||||||||||||
Sbjct: 59845 gcgagagtccgctgcgagcg 59826
to top
>emb|CR942773.1| Xenopus tropicalis finished cDNA, clone TEgg092p04
          Length = 2010

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 185  cagcctctccttcctctgct 204
            ||||||||||||||||||||
Sbjct: 1112 cagcctctccttcctctgct 1131
to top
>emb|AL583722.6|CNS07EFU Human chromosome 14 DNA sequence BAC R-982M15 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 205928

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 144   aggcctccccttcctctgctctgt 167
             ||||||||||||||| ||||||||
Sbjct: 46551 aggcctccccttcctgtgctctgt 46574
to top
>gb|AC139317.4| Mus musculus BAC clone RP24-495N6 from 15, complete sequence
          Length = 182415

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 227   gcgagcaagcgcgggcgggcggcg 250
             ||||||||||||| ||||||||||
Sbjct: 30874 gcgagcaagcgcgcgcgggcggcg 30851
to top
>gb|AY858986.1| Chlamydomonas incerta minus agglutinin (SAD1) gene, complete cds
          Length = 21171

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 291   tgcgagcgagcgcgggcgag 310
             ||||||||||||||||||||
Sbjct: 10353 tgcgagcgagcgcgggcgag 10372


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,463,780
Number of Sequences: 3902068
Number of extensions: 3463780
Number of successful extensions: 78596
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78130
Number of HSP's gapped (non-prelim): 466
length of query: 477
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 455
effective length of database: 17,147,199,772
effective search space: 7801975896260
effective search space used: 7801975896260
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top