>RP1L1_HUMAN (Q8IWN7) Retinitis pigmentosa 1-like 1 protein|
          Length = 2480

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -2

Query: 367  SGSSSRKTVTPPGLSACQ-SRESWPRPNTSSRIGARRRSTARE 242
            +GSS + T   PG S  + +R+  P P+     GA RRS+A +
Sbjct: 873  TGSSHQSTARGPGGSPQEGTRQPGPTPSPGPNSGASRRSSASQ 915

>STM1_YEAST (P39015) Suppressor protein STM1 (GU4 nucleic-binding protein 2)|
           (G4p2 protein) (Triplex-binding protein 1) (3BP1)
           (Ribosomal subunits association factor) (AF) (POP2
           multicopy suppressor protein 4) (TOM1 suppressor protein
           1)
          Length = 272

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -2

Query: 361 SSSRKTVTPPGLSACQSRESWPRPNTSSRIGARRRSTAREREISAPD 221
           SS +  V PP     ++R++ PRP  S   GA R  TA  R   + D
Sbjct: 30  SSKKADVPPPSADPSKARKNRPRP--SGNEGAIRDKTAGRRNNRSKD 74

>DCDA_THEMA (Q9X1K5) Diaminopimelate decarboxylase (EC 4.1.1.20) (DAP|
           decarboxylase)
          Length = 386

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 264 RAPIRLLVFGLGHDSRLWHALNPGGVTVFLEEDPE 368
           R  +R++      +  +W  LNP GV  F+  +PE
Sbjct: 102 REDVRIVNVDSFEEMEIWRELNPEGVEYFIRVNPE 136


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.125    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,626,106
Number of Sequences: 219361
Number of extensions: 318783
Number of successful extensions: 1119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 80,573,946
effective HSP length: 99
effective length of database: 58,857,207
effective search space used: 1412572968
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)