ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bast76a08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_463388.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1503 Score = 375 bits (189), Expect = e-101 Identities = 306/345 (88%) Strand = Plus / Plus Query: 4 gttcgacccgcgccgctcgcgctcctacaacgcggtcggctgcgccgcgccgctttgccg 63 ||||||||||||| ||||| ||| ||| ||| |||| ||||||||||||||| ||||| Sbjct: 564 gttcgacccgcgcgcctcgcactcgtacggcgccgtcgactgcgccgcgccgctctgccg 623 Query: 64 caggctcgactctggcggctgtgacctgcgccgcagtgcgtgcctctaccaggtagctta 123 |||||||||||| |||||||| ||||||||||||| || |||||||||||||| || || Sbjct: 624 caggctcgactccggcggctgcgacctgcgccgcaaggcctgcctctaccaggtcgccta 683 Query: 124 cggcgatggctccgtcaccgccggggatttcgccaccgagaccctcactttcgctggcgg 183 |||||| |||||||||||||||||||| |||||||| ||||||||||| ||||| |||| Sbjct: 684 cggcgacggctccgtcaccgccggggacttcgccacggagaccctcaccttcgccagcgg 743 Query: 184 tgcccgcgtggcgcgcgtcgctctggggtgcggccacgacaacgagggtttgttcgtcgc 243 ||||||||| |||||||||| || || ||||||||||||||||||||| | |||||||| Sbjct: 744 ggcccgcgtgccgcgcgtcgccctcggctgcggccacgacaacgagggtctcttcgtcgc 803 Query: 244 ggcggcgggcctcctcgggctcggccgaggcagtctatccttccccacccagatctcccg 303 ||||||||| ||||||||||||||||| ||||| || ||||||||| ||||||||||||| Sbjct: 804 ggcggcggggctcctcgggctcggccgcggcagcctctccttcccctcccagatctcccg 863 Query: 304 ccgctatgggcggagcttctcctactgccttgtggaccgtacctc 348 ||||| |||||||||||||| |||||||| |||||||| ||||| Sbjct: 864 ccgcttcgggcggagcttctcgtactgcctcgtggaccgcacctc 908
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 375 bits (189), Expect = e-101 Identities = 306/345 (88%) Strand = Plus / Plus Query: 4 gttcgacccgcgccgctcgcgctcctacaacgcggtcggctgcgccgcgccgctttgccg 63 ||||||||||||| ||||| ||| ||| ||| |||| ||||||||||||||| ||||| Sbjct: 23511711 gttcgacccgcgcgcctcgcactcgtacggcgccgtcgactgcgccgcgccgctctgccg 23511770 Query: 64 caggctcgactctggcggctgtgacctgcgccgcagtgcgtgcctctaccaggtagctta 123 |||||||||||| |||||||| ||||||||||||| || |||||||||||||| || || Sbjct: 23511771 caggctcgactccggcggctgcgacctgcgccgcaaggcctgcctctaccaggtcgccta 23511830 Query: 124 cggcgatggctccgtcaccgccggggatttcgccaccgagaccctcactttcgctggcgg 183 |||||| |||||||||||||||||||| |||||||| ||||||||||| ||||| |||| Sbjct: 23511831 cggcgacggctccgtcaccgccggggacttcgccacggagaccctcaccttcgccagcgg 23511890 Query: 184 tgcccgcgtggcgcgcgtcgctctggggtgcggccacgacaacgagggtttgttcgtcgc 243 ||||||||| |||||||||| || || ||||||||||||||||||||| | |||||||| Sbjct: 23511891 ggcccgcgtgccgcgcgtcgccctcggctgcggccacgacaacgagggtctcttcgtcgc 23511950 Query: 244 ggcggcgggcctcctcgggctcggccgaggcagtctatccttccccacccagatctcccg 303 ||||||||| ||||||||||||||||| ||||| || ||||||||| ||||||||||||| Sbjct: 23511951 ggcggcggggctcctcgggctcggccgcggcagcctctccttcccctcccagatctcccg 23512010 Query: 304 ccgctatgggcggagcttctcctactgccttgtggaccgtacctc 348 ||||| |||||||||||||| |||||||| |||||||| ||||| Sbjct: 23512011 ccgcttcgggcggagcttctcgtactgcctcgtggaccgcacctc 23512055 Score = 56.0 bits (28), Expect = 8e-05 Identities = 58/68 (85%) Strand = Plus / Plus Query: 104 tgcctctaccaggtagcttacggcgatggctccgtcaccgccggggatttcgccaccgag 163 ||||||||| |||| || |||||||| |||||| ||||| ||| || |||||||||||| Sbjct: 2120242 tgcctctacgaggtcgcgtacggcgacggctcctacaccgtcggcgacttcgccaccgag 2120301 Query: 164 accctcac 171 || ||||| Sbjct: 2120302 acgctcac 2120309 Score = 50.1 bits (25), Expect = 0.005 Identities = 37/41 (90%) Strand = Plus / Plus Query: 212 tgcggccacgacaacgagggtttgttcgtcgcggcggcggg 252 |||||||||||||||||||| ||||||||| |||||||| Sbjct: 2120350 tgcggccacgacaacgaggggctgttcgtcggcgcggcggg 2120390 Score = 46.1 bits (23), Expect = 0.080 Identities = 56/67 (83%) Strand = Plus / Minus Query: 209 gggtgcggccacgacaacgagggtttgttcgtcgcggcggcgggcctcctcgggctcggc 268 |||||||||| |||||||||||| |||||| | ||||||| || || ||||| ||||| Sbjct: 30009937 gggtgcggccgcgacaacgaggggctgttcgactcggcggccgggctgctcggcgtcggc 30009878 Query: 269 cgaggca 275 || |||| Sbjct: 30009877 cgcggca 30009871 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 gtcggctgcgccgcgccgct 57 |||||||||||||||||||| Sbjct: 19710511 gtcggctgcgccgcgccgct 19710492 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 319 cttctcctactgccttgtggaccg 342 |||||||||||||||||| ||||| Sbjct: 18339365 cttctcctactgccttgtcgaccg 18339388
>dbj|AP003504.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0025A05 Length = 154298 Score = 375 bits (189), Expect = e-101 Identities = 306/345 (88%) Strand = Plus / Plus Query: 4 gttcgacccgcgccgctcgcgctcctacaacgcggtcggctgcgccgcgccgctttgccg 63 ||||||||||||| ||||| ||| ||| ||| |||| ||||||||||||||| ||||| Sbjct: 75016 gttcgacccgcgcgcctcgcactcgtacggcgccgtcgactgcgccgcgccgctctgccg 75075 Query: 64 caggctcgactctggcggctgtgacctgcgccgcagtgcgtgcctctaccaggtagctta 123 |||||||||||| |||||||| ||||||||||||| || |||||||||||||| || || Sbjct: 75076 caggctcgactccggcggctgcgacctgcgccgcaaggcctgcctctaccaggtcgccta 75135 Query: 124 cggcgatggctccgtcaccgccggggatttcgccaccgagaccctcactttcgctggcgg 183 |||||| |||||||||||||||||||| |||||||| ||||||||||| ||||| |||| Sbjct: 75136 cggcgacggctccgtcaccgccggggacttcgccacggagaccctcaccttcgccagcgg 75195 Query: 184 tgcccgcgtggcgcgcgtcgctctggggtgcggccacgacaacgagggtttgttcgtcgc 243 ||||||||| |||||||||| || || ||||||||||||||||||||| | |||||||| Sbjct: 75196 ggcccgcgtgccgcgcgtcgccctcggctgcggccacgacaacgagggtctcttcgtcgc 75255 Query: 244 ggcggcgggcctcctcgggctcggccgaggcagtctatccttccccacccagatctcccg 303 ||||||||| ||||||||||||||||| ||||| || ||||||||| ||||||||||||| Sbjct: 75256 ggcggcggggctcctcgggctcggccgcggcagcctctccttcccctcccagatctcccg 75315 Query: 304 ccgctatgggcggagcttctcctactgccttgtggaccgtacctc 348 ||||| |||||||||||||| |||||||| |||||||| ||||| Sbjct: 75316 ccgcttcgggcggagcttctcgtactgcctcgtggaccgcacctc 75360
>dbj|AK101038.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033000J20, full insert sequence Length = 1763 Score = 375 bits (189), Expect = e-101 Identities = 306/345 (88%) Strand = Plus / Plus Query: 4 gttcgacccgcgccgctcgcgctcctacaacgcggtcggctgcgccgcgccgctttgccg 63 ||||||||||||| ||||| ||| ||| ||| |||| ||||||||||||||| ||||| Sbjct: 598 gttcgacccgcgcgcctcgcactcgtacggcgccgtcgactgcgccgcgccgctctgccg 657 Query: 64 caggctcgactctggcggctgtgacctgcgccgcagtgcgtgcctctaccaggtagctta 123 |||||||||||| |||||||| ||||||||||||| || |||||||||||||| || || Sbjct: 658 caggctcgactccggcggctgcgacctgcgccgcaaggcctgcctctaccaggtcgccta 717 Query: 124 cggcgatggctccgtcaccgccggggatttcgccaccgagaccctcactttcgctggcgg 183 |||||| |||||||||||||||||||| |||||||| ||||||||||| ||||| |||| Sbjct: 718 cggcgacggctccgtcaccgccggggacttcgccacggagaccctcaccttcgccagcgg 777 Query: 184 tgcccgcgtggcgcgcgtcgctctggggtgcggccacgacaacgagggtttgttcgtcgc 243 ||||||||| |||||||||| || || ||||||||||||||||||||| | |||||||| Sbjct: 778 ggcccgcgtgccgcgcgtcgccctcggctgcggccacgacaacgagggtctcttcgtcgc 837 Query: 244 ggcggcgggcctcctcgggctcggccgaggcagtctatccttccccacccagatctcccg 303 ||||||||| ||||||||||||||||| ||||| || ||||||||| ||||||||||||| Sbjct: 838 ggcggcggggctcctcgggctcggccgcggcagcctctccttcccctcccagatctcccg 897 Query: 304 ccgctatgggcggagcttctcctactgccttgtggaccgtacctc 348 ||||| |||||||||||||| |||||||| |||||||| ||||| Sbjct: 898 ccgcttcgggcggagcttctcgtactgcctcgtggaccgcacctc 942
>dbj|AK120968.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023040I01, full insert sequence Length = 1769 Score = 367 bits (185), Expect = 2e-98 Identities = 305/345 (88%) Strand = Plus / Plus Query: 4 gttcgacccgcgccgctcgcgctcctacaacgcggtcggctgcgccgcgccgctttgccg 63 ||||||| ||||| ||||| ||| ||| ||| |||| ||||||||||||||| ||||| Sbjct: 593 gttcgacacgcgcgcctcgcactcgtacggcgccgtcgactgcgccgcgccgctctgccg 652 Query: 64 caggctcgactctggcggctgtgacctgcgccgcagtgcgtgcctctaccaggtagctta 123 |||||||||||| |||||||| ||||||||||||| || |||||||||||||| || || Sbjct: 653 caggctcgactccggcggctgcgacctgcgccgcaaggcctgcctctaccaggtcgccta 712 Query: 124 cggcgatggctccgtcaccgccggggatttcgccaccgagaccctcactttcgctggcgg 183 |||||| |||||||||||||||||||| |||||||| ||||||||||| ||||| |||| Sbjct: 713 cggcgacggctccgtcaccgccggggacttcgccacggagaccctcaccttcgccagcgg 772 Query: 184 tgcccgcgtggcgcgcgtcgctctggggtgcggccacgacaacgagggtttgttcgtcgc 243 ||||||||| |||||||||| || || ||||||||||||||||||||| | |||||||| Sbjct: 773 ggcccgcgtgccgcgcgtcgccctcggctgcggccacgacaacgagggtctcttcgtcgc 832 Query: 244 ggcggcgggcctcctcgggctcggccgaggcagtctatccttccccacccagatctcccg 303 ||||||||| ||||||||||||||||| ||||| || ||||||||| ||||||||||||| Sbjct: 833 ggcggcggggctcctcgggctcggccgcggcagcctctccttcccctcccagatctcccg 892 Query: 304 ccgctatgggcggagcttctcctactgccttgtggaccgtacctc 348 ||||| |||||||||||||| |||||||| |||||||| ||||| Sbjct: 893 ccgcttcgggcggagcttctcgtactgcctcgtggaccgcacctc 937
>dbj|AK104992.2| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-G01, full insert sequence Length = 1142 Score = 363 bits (183), Expect = 3e-97 Identities = 279/311 (89%) Strand = Plus / Plus Query: 38 gtcggctgcgccgcgccgctttgccgcaggctcgactctggcggctgtgacctgcgccgc 97 |||| ||||||||||||||| ||||||||||||||||| |||||||| |||||||||||| Sbjct: 11 gtcgactgcgccgcgccgctctgccgcaggctcgactccggcggctgcgacctgcgccgc 70 Query: 98 agtgcgtgcctctaccaggtagcttacggcgatggctccgtcaccgccggggatttcgcc 157 | || |||||||||||||| || |||||||| |||||||||||||||||||| |||||| Sbjct: 71 aaggcctgcctctaccaggtcgcctacggcgacggctccgtcaccgccggggacttcgcc 130 Query: 158 accgagaccctcactttcgctggcggtgcccgcgtggcgcgcgtcgctctggggtgcggc 217 || ||||||||||| ||||| |||| ||||||||| |||||||||| || || |||||| Sbjct: 131 acggagaccctcaccttcgccagcggggcccgcgtgccgcgcgtcgccctcggctgcggc 190 Query: 218 cacgacaacgagggtttgttcgtcgcggcggcgggcctcctcgggctcggccgaggcagt 277 ||||||||||||||| | ||||||||||||||||| ||||||||||||||||| ||||| Sbjct: 191 cacgacaacgagggtctcttcgtcgcggcggcggggctcctcgggctcggccgcggcagc 250 Query: 278 ctatccttccccacccagatctcccgccgctatgggcggagcttctcctactgccttgtg 337 || ||||||||| |||||||||||||||||| |||||||||||||| |||||||| ||| Sbjct: 251 ctctccttcccctcccagatctcccgccgcttcgggcggagcttctcgtactgcctcgtg 310 Query: 338 gaccgtacctc 348 ||||| ||||| Sbjct: 311 gaccgcacctc 321
>gb|BT016792.1| Zea mays clone Contig625 mRNA sequence Length = 1862 Score = 240 bits (121), Expect = 3e-60 Identities = 289/345 (83%) Strand = Plus / Plus Query: 4 gttcgacccgcgccgctcgcgctcctacaacgcggtcggctgcgccgcgccgctttgccg 63 |||||||||||| |||||| |||| ||| ||| || ||||||| |||| |||| ||||| Sbjct: 520 gttcgacccgcggcgctcgagctcatacggcgccgtgggctgcggcgcggcgctgtgccg 579 Query: 64 caggctcgactctggcggctgtgacctgcgccgcagtgcgtgcctctaccaggtagctta 123 |||||| ||||| || ||||| |||||||| ||| | |||||| | |||||||| || || Sbjct: 580 caggctggactcggggggctgcgacctgcggcgcggggcgtgcatgtaccaggtggccta 639 Query: 124 cggcgatggctccgtcaccgccggggatttcgccaccgagaccctcactttcgctggcgg 183 |||||| |||||||| || || || || |||| |||||||| ||||| ||||| || || Sbjct: 640 cggcgacggctccgtgacggcgggcgacttcgtgaccgagacgctcaccttcgcgggggg 699 Query: 184 tgcccgcgtggcgcgcgtcgctctggggtgcggccacgacaacgagggtttgttcgtcgc 243 ||||||||||||||||| || || ||||||||||||||||||||||| ||||||| || Sbjct: 700 cgcccgcgtggcgcgcgtggcgctcgggtgcggccacgacaacgagggcctgttcgtggc 759 Query: 244 ggcggcgggcctcctcgggctcggccgaggcagtctatccttccccacccagatctcccg 303 |||||||| || || |||||||| || ||| | || || ||||| |||||||||||||| Sbjct: 760 cgcggcggggctgctggggctcgggcgcggcgggctgtcgttcccgacccagatctcccg 819 Query: 304 ccgctatgggcggagcttctcctactgccttgtggaccgtacctc 348 |||||| || |||||||||||||||||||| || ||||| ||||| Sbjct: 820 ccgctacggccggagcttctcctactgcctcgtcgaccgcacctc 864
>ref|XM_476004.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1428 Score = 224 bits (113), Expect = 2e-55 Identities = 290/349 (83%) Strand = Plus / Plus Query: 5 ttcgacccgcgccgctcgcgctcctacaacgcggtcggctgcgccgcgccgctttgccgc 64 ||||||||||||||||| ||||||||| |||||| | ||||| |||||| | |||||| Sbjct: 490 ttcgacccgcgccgctcccgctcctacgccgcggtggactgcgtcgcgcccatctgccgc 549 Query: 65 aggctcgactctggcggctgtgacctgcgccgcagtgcgtgcctctaccaggtagcttac 124 | ||||| || | |||||| ||| |||||||| | ||||||||||||||||| ||| Sbjct: 550 cgcctcgattccgccggctgcgacaggcgccgcaactcctgcctctaccaggtagcctac 609 Query: 125 ggcgatggctccgtcaccgccggggatttcgccaccgagaccctcactttcgctggcggt 184 ||||| ||||| |||||||||||||| |||||| ||||||| ||||| ||||| | || Sbjct: 610 ggcgacggctctgtcaccgccggggacttcgcctccgagacgctcaccttcgcgcggggc 669 Query: 185 gcccgcgtggcgcgcgtcgctctggggtgcggccacgacaacgagggtttgttcgtcgcg 244 ||||||||| ||| || || | ||||||||||||||||||||||| | ||| |||| Sbjct: 670 gcccgcgtgcagcgggtggccatcgggtgcggccacgacaacgaggggctcttcatcgcc 729 Query: 245 gcggcgggcctcctcgggctcggccgaggcagtctatccttccccacccagatctcccgc 304 ||| |||| |||||||| |||||||| ||||| || || |||||| |||||||| ||||| Sbjct: 730 gcgtcgggactcctcggcctcggccgtggcaggctgtcgttcccctcccagatcgcccgc 789 Query: 305 cgctatgggcggagcttctcctactgccttgtggaccgtacctcgtcgg 353 ||| || |||||||||||||||||||| |||||||| |||||||||| Sbjct: 790 agcttcggccggagcttctcctactgcctcgtggaccggacctcgtcgg 838
>gb|AC136216.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0022J22, complete sequence Length = 142854 Score = 224 bits (113), Expect = 2e-55 Identities = 290/349 (83%) Strand = Plus / Minus Query: 5 ttcgacccgcgccgctcgcgctcctacaacgcggtcggctgcgccgcgccgctttgccgc 64 ||||||||||||||||| ||||||||| |||||| | ||||| |||||| | |||||| Sbjct: 44035 ttcgacccgcgccgctcccgctcctacgccgcggtggactgcgtcgcgcccatctgccgc 43976 Query: 65 aggctcgactctggcggctgtgacctgcgccgcagtgcgtgcctctaccaggtagcttac 124 | ||||| || | |||||| ||| |||||||| | ||||||||||||||||| ||| Sbjct: 43975 cgcctcgattccgccggctgcgacaggcgccgcaactcctgcctctaccaggtagcctac 43916 Query: 125 ggcgatggctccgtcaccgccggggatttcgccaccgagaccctcactttcgctggcggt 184 ||||| ||||| |||||||||||||| |||||| ||||||| ||||| ||||| | || Sbjct: 43915 ggcgacggctctgtcaccgccggggacttcgcctccgagacgctcaccttcgcgcggggc 43856 Query: 185 gcccgcgtggcgcgcgtcgctctggggtgcggccacgacaacgagggtttgttcgtcgcg 244 ||||||||| ||| || || | ||||||||||||||||||||||| | ||| |||| Sbjct: 43855 gcccgcgtgcagcgggtggccatcgggtgcggccacgacaacgaggggctcttcatcgcc 43796 Query: 245 gcggcgggcctcctcgggctcggccgaggcagtctatccttccccacccagatctcccgc 304 ||| |||| |||||||| |||||||| ||||| || || |||||| |||||||| ||||| Sbjct: 43795 gcgtcgggactcctcggcctcggccgtggcaggctgtcgttcccctcccagatcgcccgc 43736 Query: 305 cgctatgggcggagcttctcctactgccttgtggaccgtacctcgtcgg 353 ||| || |||||||||||||||||||| |||||||| |||||||||| Sbjct: 43735 agcttcggccggagcttctcctactgcctcgtggaccggacctcgtcgg 43687
>gb|AC105260.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1115_D04, complete sequence Length = 100800 Score = 224 bits (113), Expect = 2e-55 Identities = 290/349 (83%) Strand = Plus / Minus Query: 5 ttcgacccgcgccgctcgcgctcctacaacgcggtcggctgcgccgcgccgctttgccgc 64 ||||||||||||||||| ||||||||| |||||| | ||||| |||||| | |||||| Sbjct: 86800 ttcgacccgcgccgctcccgctcctacgccgcggtggactgcgtcgcgcccatctgccgc 86741 Query: 65 aggctcgactctggcggctgtgacctgcgccgcagtgcgtgcctctaccaggtagcttac 124 | ||||| || | |||||| ||| |||||||| | ||||||||||||||||| ||| Sbjct: 86740 cgcctcgattccgccggctgcgacaggcgccgcaactcctgcctctaccaggtagcctac 86681 Query: 125 ggcgatggctccgtcaccgccggggatttcgccaccgagaccctcactttcgctggcggt 184 ||||| ||||| |||||||||||||| |||||| ||||||| ||||| ||||| | || Sbjct: 86680 ggcgacggctctgtcaccgccggggacttcgcctccgagacgctcaccttcgcgcggggc 86621 Query: 185 gcccgcgtggcgcgcgtcgctctggggtgcggccacgacaacgagggtttgttcgtcgcg 244 ||||||||| ||| || || | ||||||||||||||||||||||| | ||| |||| Sbjct: 86620 gcccgcgtgcagcgggtggccatcgggtgcggccacgacaacgaggggctcttcatcgcc 86561 Query: 245 gcggcgggcctcctcgggctcggccgaggcagtctatccttccccacccagatctcccgc 304 ||| |||| |||||||| |||||||| ||||| || || |||||| |||||||| ||||| Sbjct: 86560 gcgtcgggactcctcggcctcggccgtggcaggctgtcgttcccctcccagatcgcccgc 86501 Query: 305 cgctatgggcggagcttctcctactgccttgtggaccgtacctcgtcgg 353 ||| || |||||||||||||||||||| |||||||| |||||||||| Sbjct: 86500 agcttcggccggagcttctcctactgcctcgtggaccggacctcgtcgg 86452
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 224 bits (113), Expect = 2e-55 Identities = 290/349 (83%) Strand = Plus / Minus Query: 5 ttcgacccgcgccgctcgcgctcctacaacgcggtcggctgcgccgcgccgctttgccgc 64 ||||||||||||||||| ||||||||| |||||| | ||||| |||||| | |||||| Sbjct: 29160576 ttcgacccgcgccgctcccgctcctacgccgcggtggactgcgtcgcgcccatctgccgc 29160517 Query: 65 aggctcgactctggcggctgtgacctgcgccgcagtgcgtgcctctaccaggtagcttac 124 | ||||| || | |||||| ||| |||||||| | ||||||||||||||||| ||| Sbjct: 29160516 cgcctcgattccgccggctgcgacaggcgccgcaactcctgcctctaccaggtagcctac 29160457 Query: 125 ggcgatggctccgtcaccgccggggatttcgccaccgagaccctcactttcgctggcggt 184 ||||| ||||| |||||||||||||| |||||| ||||||| ||||| ||||| | || Sbjct: 29160456 ggcgacggctctgtcaccgccggggacttcgcctccgagacgctcaccttcgcgcggggc 29160397 Query: 185 gcccgcgtggcgcgcgtcgctctggggtgcggccacgacaacgagggtttgttcgtcgcg 244 ||||||||| ||| || || | ||||||||||||||||||||||| | ||| |||| Sbjct: 29160396 gcccgcgtgcagcgggtggccatcgggtgcggccacgacaacgaggggctcttcatcgcc 29160337 Query: 245 gcggcgggcctcctcgggctcggccgaggcagtctatccttccccacccagatctcccgc 304 ||| |||| |||||||| |||||||| ||||| || || |||||| |||||||| ||||| Sbjct: 29160336 gcgtcgggactcctcggcctcggccgtggcaggctgtcgttcccctcccagatcgcccgc 29160277 Query: 305 cgctatgggcggagcttctcctactgccttgtggaccgtacctcgtcgg 353 ||| || |||||||||||||||||||| |||||||| |||||||||| Sbjct: 29160276 agcttcggccggagcttctcctactgcctcgtggaccggacctcgtcgg 29160228
>dbj|AK103957.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-B02, full insert sequence Length = 1639 Score = 224 bits (113), Expect = 2e-55 Identities = 290/349 (83%) Strand = Plus / Plus Query: 5 ttcgacccgcgccgctcgcgctcctacaacgcggtcggctgcgccgcgccgctttgccgc 64 ||||||||||||||||| ||||||||| |||||| | ||||| |||||| | |||||| Sbjct: 523 ttcgacccgcgccgctcccgctcctacgccgcggtggactgcgtcgcgcccatctgccgc 582 Query: 65 aggctcgactctggcggctgtgacctgcgccgcagtgcgtgcctctaccaggtagcttac 124 | ||||| || | |||||| ||| |||||||| | ||||||||||||||||| ||| Sbjct: 583 cgcctcgattccgccggctgcgacaggcgccgcaactcctgcctctaccaggtagcctac 642 Query: 125 ggcgatggctccgtcaccgccggggatttcgccaccgagaccctcactttcgctggcggt 184 ||||| ||||| |||||||||||||| |||||| ||||||| ||||| ||||| | || Sbjct: 643 ggcgacggctctgtcaccgccggggacttcgcctccgagacgctcaccttcgcgcggggc 702 Query: 185 gcccgcgtggcgcgcgtcgctctggggtgcggccacgacaacgagggtttgttcgtcgcg 244 ||||||||| ||| || || | ||||||||||||||||||||||| | ||| |||| Sbjct: 703 gcccgcgtgcagcgggtggccatcgggtgcggccacgacaacgaggggctcttcatcgcc 762 Query: 245 gcggcgggcctcctcgggctcggccgaggcagtctatccttccccacccagatctcccgc 304 ||| |||| |||||||| |||||||| ||||| || || |||||| |||||||| ||||| Sbjct: 763 gcgtcgggactcctcggcctcggccgtggcaggctgtcgttcccctcccagatcgcccgc 822 Query: 305 cgctatgggcggagcttctcctactgccttgtggaccgtacctcgtcgg 353 ||| || |||||||||||||||||||| |||||||| |||||||||| Sbjct: 823 agcttcggccggagcttctcctactgcctcgtggaccggacctcgtcgg 871
>dbj|AK070159.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023046M06, full insert sequence Length = 1714 Score = 216 bits (109), Expect = 4e-53 Identities = 289/349 (82%) Strand = Plus / Plus Query: 5 ttcgacccgcgccgctcgcgctcctacaacgcggtcggctgcgccgcgccgctttgccgc 64 ||||||||||||||||| ||||||||| |||||| | ||||| |||||| | |||||| Sbjct: 600 ttcgacccgcgccgctcccgctcctacgccgcggtggactgcgtcgcgcccatctgccgc 659 Query: 65 aggctcgactctggcggctgtgacctgcgccgcagtgcgtgcctctaccaggtagcttac 124 | ||||| || | |||||| ||| |||||||| | ||||||||||||||||| ||| Sbjct: 660 cgcctcgattccgccggctgcgacaggcgccgcaactcctgcctctaccaggtagcctac 719 Query: 125 ggcgatggctccgtcaccgccggggatttcgccaccgagaccctcactttcgctggcggt 184 ||||| ||||| |||||||||||||| |||||| ||||||| ||||| | ||| | || Sbjct: 720 ggcgacggctctgtcaccgccggggacttcgcctccgagacgctcacctccgcgcggggc 779 Query: 185 gcccgcgtggcgcgcgtcgctctggggtgcggccacgacaacgagggtttgttcgtcgcg 244 ||||||||| ||| || || | ||||||||||||||||||||||| | ||| |||| Sbjct: 780 gcccgcgtgcagcgggtggccatcgggtgcggccacgacaacgaggggctcttcatcgcc 839 Query: 245 gcggcgggcctcctcgggctcggccgaggcagtctatccttccccacccagatctcccgc 304 ||| |||| |||||||| |||||||| ||||| || || |||||| |||||||| ||||| Sbjct: 840 gcgtcgggactcctcggcctcggccgtggcaggctgtcgttcccctcccagatcgcccgc 899 Query: 305 cgctatgggcggagcttctcctactgccttgtggaccgtacctcgtcgg 353 ||| || |||||||||||||||||||| |||||||| |||||||||| Sbjct: 900 agcttcggccggagcttctcctactgcctcgtggaccggacctcgtcgg 948
>ref|NM_184292.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1833 Score = 56.0 bits (28), Expect = 8e-05 Identities = 58/68 (85%) Strand = Plus / Plus Query: 104 tgcctctaccaggtagcttacggcgatggctccgtcaccgccggggatttcgccaccgag 163 ||||||||| |||| || |||||||| |||||| ||||| ||| || |||||||||||| Sbjct: 755 tgcctctacgaggtcgcgtacggcgacggctcctacaccgtcggcgacttcgccaccgag 814 Query: 164 accctcac 171 || ||||| Sbjct: 815 acgctcac 822 Score = 50.1 bits (25), Expect = 0.005 Identities = 37/41 (90%) Strand = Plus / Plus Query: 212 tgcggccacgacaacgagggtttgttcgtcgcggcggcggg 252 |||||||||||||||||||| ||||||||| |||||||| Sbjct: 863 tgcggccacgacaacgaggggctgttcgtcggcgcggcggg 903
>dbj|AP002913.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0480E02 Length = 141862 Score = 56.0 bits (28), Expect = 8e-05 Identities = 58/68 (85%) Strand = Plus / Plus Query: 104 tgcctctaccaggtagcttacggcgatggctccgtcaccgccggggatttcgccaccgag 163 ||||||||| |||| || |||||||| |||||| ||||| ||| || |||||||||||| Sbjct: 41354 tgcctctacgaggtcgcgtacggcgacggctcctacaccgtcggcgacttcgccaccgag 41413 Query: 164 accctcac 171 || ||||| Sbjct: 41414 acgctcac 41421 Score = 50.1 bits (25), Expect = 0.005 Identities = 37/41 (90%) Strand = Plus / Plus Query: 212 tgcggccacgacaacgagggtttgttcgtcgcggcggcggg 252 |||||||||||||||||||| ||||||||| |||||||| Sbjct: 41462 tgcggccacgacaacgaggggctgttcgtcggcgcggcggg 41502
>dbj|AK068990.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170M01, full insert sequence Length = 1833 Score = 56.0 bits (28), Expect = 8e-05 Identities = 58/68 (85%) Strand = Plus / Plus Query: 104 tgcctctaccaggtagcttacggcgatggctccgtcaccgccggggatttcgccaccgag 163 ||||||||| |||| || |||||||| |||||| ||||| ||| || |||||||||||| Sbjct: 755 tgcctctacgaggtcgcgtacggcgacggctcctacaccgtcggcgacttcgccaccgag 814 Query: 164 accctcac 171 || ||||| Sbjct: 815 acgctcac 822 Score = 50.1 bits (25), Expect = 0.005 Identities = 37/41 (90%) Strand = Plus / Plus Query: 212 tgcggccacgacaacgagggtttgttcgtcgcggcggcggg 252 |||||||||||||||||||| ||||||||| |||||||| Sbjct: 863 tgcggccacgacaacgaggggctgttcgtcggcgcggcggg 903
>gb|AY509606.1| Gallus gallus suppressor of cytokine signaling 2 gene, alternatively spliced variants 1 and 2, complete cds Length = 5479 Score = 50.1 bits (25), Expect = 0.005 Identities = 25/25 (100%) Strand = Plus / Minus Query: 41 ggctgcgccgcgccgctttgccgca 65 ||||||||||||||||||||||||| Sbjct: 320 ggctgcgccgcgccgctttgccgca 296
>ref|NM_191796.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1341 Score = 46.1 bits (23), Expect = 0.080 Identities = 56/67 (83%) Strand = Plus / Plus Query: 209 gggtgcggccacgacaacgagggtttgttcgtcgcggcggcgggcctcctcgggctcggc 268 |||||||||| |||||||||||| |||||| | ||||||| || || ||||| ||||| Sbjct: 595 gggtgcggccgcgacaacgaggggctgttcgactcggcggccgggctgctcggcgtcggc 654 Query: 269 cgaggca 275 || |||| Sbjct: 655 cgcggca 661
>dbj|AP003292.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0690B02 Length = 153116 Score = 46.1 bits (23), Expect = 0.080 Identities = 56/67 (83%) Strand = Plus / Minus Query: 209 gggtgcggccacgacaacgagggtttgttcgtcgcggcggcgggcctcctcgggctcggc 268 |||||||||| |||||||||||| |||||| | ||||||| || || ||||| ||||| Sbjct: 5927 gggtgcggccgcgacaacgaggggctgttcgactcggcggccgggctgctcggcgtcggc 5868 Query: 269 cgaggca 275 || |||| Sbjct: 5867 cgcggca 5861
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Plus Query: 244 ggcggcgggcctcctcgggctcggcc 269 ||||||||||||| |||||||||||| Sbjct: 2158053 ggcggcgggcctcgtcgggctcggcc 2158078
>ref|XM_479408.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1350 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 250 gggcctcctcgggctcggccg 270 ||||||||||||||||||||| Sbjct: 678 gggcctcctcgggctcggccg 698
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 46 cgccgcgccgctttgccgcag 66 ||||||||||||||||||||| Sbjct: 5322254 cgccgcgccgctttgccgcag 5322234
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 250 gggcctcctcgggctcggccg 270 ||||||||||||||||||||| Sbjct: 27693447 gggcctcctcgggctcggccg 27693467
>emb|BX818267.1|CNS0AB0G Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL6ZE10 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1197 Score = 42.1 bits (21), Expect = 1.3 Identities = 39/45 (86%) Strand = Plus / Plus Query: 198 gcgtcgctctggggtgcggccacgacaacgagggtttgttcgtcg 242 |||| |||||||| || |||||||||||||| ||| | ||||||| Sbjct: 261 gcgttgctctgggatgtggccacgacaacgaaggtctcttcgtcg 305
>gb|AC012485.13| Homo sapiens BAC clone RP11-5O24 from 2, complete sequence Length = 168738 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 310 tgggcggagcttctcctactg 330 ||||||||||||||||||||| Sbjct: 61740 tgggcggagcttctcctactg 61760
>dbj|AP005184.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0047B07 Length = 157797 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 250 gggcctcctcgggctcggccg 270 ||||||||||||||||||||| Sbjct: 150440 gggcctcctcgggctcggccg 150460
>dbj|AP003833.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1477_F01 Length = 158792 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 250 gggcctcctcgggctcggccg 270 ||||||||||||||||||||| Sbjct: 72549 gggcctcctcgggctcggccg 72569
>ref|XM_463285.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 849 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 319 cttctcctactgccttgtggaccg 342 |||||||||||||||||| ||||| Sbjct: 166 cttctcctactgccttgtcgaccg 189
>ref|XM_513668.1| PREDICTED: Pan troglodytes tripartite motif-containing 33 protein (LOC457141), mRNA Length = 3267 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 251 ggcctcctcgggctcggccgaggc 274 ||||||||||||||||||| |||| Sbjct: 480 ggcctcctcgggctcggcccaggc 503
>ref|XM_513169.1| PREDICTED: Pan troglodytes similar to family with sequence similarity 43, member B (LOC456591), mRNA Length = 1190 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 cgtggcgcgcgtcgctctgg 209 |||||||||||||||||||| Sbjct: 649 cgtggcgcgcgtcgctctgg 630
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 tcgtcgcggcggcgggcctc 256 |||||||||||||||||||| Sbjct: 3255133 tcgtcgcggcggcgggcctc 3255114 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 235 gttcgtcgcggcggcgggcctcct 258 ||||||||||||||||||| |||| Sbjct: 826812 gttcgtcgcggcggcgggcatcct 826835
>ref|XM_599043.2| PREDICTED: Bos taurus similar to CG8312-PA, isoform A (LOC520793), mRNA Length = 972 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 cgtggcgcgcgtcgctctgg 209 |||||||||||||||||||| Sbjct: 649 cgtggcgcgcgtcgctctgg 630
>ref|NM_015906.3| Homo sapiens tripartite motif-containing 33 (TRIM33), transcript variant a, mRNA Length = 8339 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 251 ggcctcctcgggctcggccgaggc 274 ||||||||||||||||||| |||| Sbjct: 291 ggcctcctcgggctcggcccaggc 314
>ref|NM_033020.2| Homo sapiens tripartite motif-containing 33 (TRIM33), transcript variant b, mRNA Length = 8288 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 251 ggcctcctcgggctcggccgaggc 274 ||||||||||||||||||| |||| Sbjct: 291 ggcctcctcgggctcggcccaggc 314
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 235 gttcgtcgcggcggcgggcctcct 258 ||||||||||||||||||| |||| Sbjct: 1713530 gttcgtcgcggcggcgggcatcct 1713553 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 tcgtcgcggcggcgggcctc 256 |||||||||||||||||||| Sbjct: 713460 tcgtcgcggcggcgggcctc 713441
>ref|NM_207334.1| Homo sapiens family with sequence similarity 43, member B (FAM43B), mRNA Length = 2569 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 cgtggcgcgcgtcgctctgg 209 |||||||||||||||||||| Sbjct: 1184 cgtggcgcgcgtcgctctgg 1165
>emb|AL391357.20| Human DNA sequence from clone RP11-401M16 on chromosome 1 Contains the gene for calcium/calmodulin-dependent protein kinase II (CaMKIINalpha), the gene for a novel protein (FLJ12875), a ribosomal protein S4 X-linked (RPS4X) pseudogene, the CDA gene for cytidine deaminase, the PINK1 gene for PTEN induced putative kinase 1, a novel gene (FLJ00387), the DDOST gene for dolichyl-diphosphooligosaccharide-protein glycosyltransferase and the 3' end of the KIF17 gene for kinesin family member 17, complete sequence Length = 195076 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 cgtggcgcgcgtcgctctgg 209 |||||||||||||||||||| Sbjct: 75429 cgtggcgcgcgtcgctctgg 75410
>emb|AL390241.19| Human DNA sequence from clone RP11-343L14 on chromosome 1 Contains the 3' end of a ribosomal protein L26 (RPL26) pseudogene, a eukaryotic translation initiation factor 2 subunit 2 beta 38kDa (EIF2S2) pseudogene, the 5' end of the TRIM33 gene for tripartite motif-containing 33, a pyruvate kinase muscle (PKM2) pseudogene, the BCAS2 gene for breast carcinoma amplified sequence 2, the 3' end of the gene for a novel protein (FLJ37099) and a CpG island, complete sequence Length = 123501 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 251 ggcctcctcgggctcggccgaggc 274 ||||||||||||||||||| |||| Sbjct: 50689 ggcctcctcgggctcggcccaggc 50666
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 235 gttcgtcgcggcggcgggcctcct 258 ||||||||||||||||||| |||| Sbjct: 1600243 gttcgtcgcggcggcgggcatcct 1600266 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 tcgtcgcggcggcgggcctc 256 |||||||||||||||||||| Sbjct: 522105 tcgtcgcggcggcgggcctc 522086
>dbj|AB029036.1| Homo sapiens mRNA for KIAA1113 protein, partial cds Length = 3424 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 251 ggcctcctcgggctcggccgaggc 274 ||||||||||||||||||| |||| Sbjct: 220 ggcctcctcgggctcggcccaggc 243
>dbj|AK126900.1| Homo sapiens cDNA FLJ44952 fis, clone BRAWH2004078 Length = 2569 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 cgtggcgcgcgtcgctctgg 209 |||||||||||||||||||| Sbjct: 1184 cgtggcgcgcgtcgctctgg 1165
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 ggcggtgcccgcgtggcgcg 198 |||||||||||||||||||| Sbjct: 2592251 ggcggtgcccgcgtggcgcg 2592232
>gb|AF220137.1|AF220137 Homo sapiens tripartite motif protein TRIM33 beta mRNA, complete cds; alternatively spliced Length = 3458 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 251 ggcctcctcgggctcggccgaggc 274 ||||||||||||||||||| |||| Sbjct: 291 ggcctcctcgggctcggcccaggc 314
>gb|AF220136.1|AF220136 Homo sapiens tripartite motif protein TRIM33 alpha (TRIM33) mRNA, complete cds; alternatively spliced Length = 3509 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 251 ggcctcctcgggctcggccgaggc 274 ||||||||||||||||||| |||| Sbjct: 291 ggcctcctcgggctcggcccaggc 314
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 gtcggctgcgccgcgccgct 57 |||||||||||||||||||| Sbjct: 28401287 gtcggctgcgccgcgccgct 28401306
>dbj|AP004360.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1166B08 Length = 147667 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 gtcggctgcgccgcgccgct 57 |||||||||||||||||||| Sbjct: 59133 gtcggctgcgccgcgccgct 59114
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 175 cgctggcggtgcccgcgtggcgcg 198 |||||||||||||||||| ||||| Sbjct: 1602559 cgctggcggtgcccgcgtcgcgcg 1602536
>dbj|AP003562.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1108H10 Length = 136357 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 319 cttctcctactgccttgtggaccg 342 |||||||||||||||||| ||||| Sbjct: 96699 cttctcctactgccttgtcgaccg 96722
>dbj|AP004118.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1148_D05 Length = 155146 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 gtcggctgcgccgcgccgct 57 |||||||||||||||||||| Sbjct: 25408 gtcggctgcgccgcgccgct 25427
>gb|AF119043.1|AF119043 Homo sapiens transcriptional intermediary factor 1 gamma mRNA, complete cds Length = 3510 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 251 ggcctcctcgggctcggccgaggc 274 ||||||||||||||||||| |||| Sbjct: 291 ggcctcctcgggctcggcccaggc 314
>dbj|AB088224.1| Streptomyces rochei plasmid pSLA2-L DNA, complete sequence Length = 210614 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 cgggcctcctcgggctcggc 268 |||||||||||||||||||| Sbjct: 144763 cgggcctcctcgggctcggc 144782
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 gggtttgttcgtcgcggcgg 248 |||||||||||||||||||| Sbjct: 159655 gggtttgttcgtcgcggcgg 159674
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 cgcggcggcgggcctcctcg 260 |||||||||||||||||||| Sbjct: 1997785 cgcggcggcgggcctcctcg 1997804 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,069,184 Number of Sequences: 3902068 Number of extensions: 2069184 Number of successful extensions: 45018 Number of sequences better than 10.0: 53 Number of HSP's better than 10.0 without gapping: 56 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42950 Number of HSP's gapped (non-prelim): 2062 length of query: 371 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 349 effective length of database: 17,147,199,772 effective search space: 5984372720428 effective search space used: 5984372720428 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
