ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast76a07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CBK1_CANGA (Q6FP74) Serine/threonine-protein kinase CBK1 (EC 2.7... 32 0.79
2PGBM_HUMAN (P98160) Basement membrane-specific heparan sulfate p... 30 2.3
3LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC... 30 3.9
4PRMA_CHLTE (Q8KG70) Ribosomal protein L11 methyltransferase (EC ... 29 5.1
5SCG2_HUMAN (P13521) Secretogranin-2 precursor (Secretogranin II)... 29 5.1
6HTPG_NITWN (Q3SNS6) Chaperone protein htpG (Heat shock protein h... 29 5.1
7PGRC2_HUMAN (O15173) Membrane-associated progesterone receptor c... 29 5.1
8RECX_PASMU (Q9CK20) Regulatory protein recX 28 8.7
9OVOL2_MOUSE (Q8CIV7) Transcription factor Ovo-like 2 (mOvo2) (Zi... 28 8.7

>CBK1_CANGA (Q6FP74) Serine/threonine-protein kinase CBK1 (EC 2.7.11.1)|
          Length = 773

 Score = 32.0 bits (71), Expect = 0.79
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -1

Query: 147 TEKVGDPASGTDGSTPRFTISVDSSSRAMAGRSWVAAWR 31
           T K G P    DGS  R T+ VDS +  M+ R  +  WR
Sbjct: 537 TTKNGAPNDAGDGSNNRQTMIVDSINLTMSNRQQIQTWR 575



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>PGBM_HUMAN (P98160) Basement membrane-specific heparan sulfate proteoglycan core|
            protein precursor (HSPG) (Perlecan) (PLC)
          Length = 4391

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 21/54 (38%), Positives = 29/54 (53%)
 Frame = +2

Query: 77   LSTEIVNRGVEPSVPDAGSPTFSVHVRRRLPDFLQSVNLKYVRLGYHYLLSHGV 238
            L T +   GVEPSVP + +   S H R  + +   SVN K + L Y +L S G+
Sbjct: 4048 LHTLLYLGGVEPSVPLSPATNMSAHFRGCVGEV--SVNGKRLDLTYSFLGSQGI 4099



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>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)|
           (LOX-100) (LOX2:Hv:1)
          Length = 936

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = -1

Query: 204 RTYLRFTDCRKSGSRRRTCTEKVGDPASGTDGSTPRFTISVDSSSRAM 61
           RT++     RK G+ RRT   KVG  ++ T  +T   T+S DS+  A+
Sbjct: 23  RTFVVPEARRKPGNGRRTSVSKVGSTSTSTT-TTTTTTLSADSNGAAV 69



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>PRMA_CHLTE (Q8KG70) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11|
           Mtase)
          Length = 289

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 16/32 (50%), Positives = 17/32 (53%)
 Frame = -1

Query: 117 TDGSTPRFTISVDSSSRAMAGRSWVAAWRARL 22
           T GS PRFT S       MA R+W A W A L
Sbjct: 67  TFGSVPRFTASF------MADRNWNAEWEAHL 92



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>SCG2_HUMAN (P13521) Secretogranin-2 precursor (Secretogranin II) (SgII)|
           (Chromogranin C) [Contains: Secretoneurin (SN)]
          Length = 617

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 233 GVYLATIPVIVLVCGAEVGSLSRDELWRK 319
           G  L+ IP+I L+ GAE  S  R++L +K
Sbjct: 10  GAALSLIPLIFLISGAEAASFQRNQLLQK 38



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>HTPG_NITWN (Q3SNS6) Chaperone protein htpG (Heat shock protein htpG) (High|
           temperature protein G)
          Length = 637

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 144 EKVGDPASGTDGSTPRFTISVDSSSRAMA 58
           E + DPA  TD + PR +I++D+  R +A
Sbjct: 56  EAISDPALLTDETRPRISITIDAERRQLA 84



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>PGRC2_HUMAN (O15173) Membrane-associated progesterone receptor component 2|
           (Progesterone membrane-binding protein) (Steroid
           receptor protein DG6)
          Length = 223

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -1

Query: 141 KVGDPASGTDGSTPRFTISVDSSSRAMAGRSWVAAWRARLVGGGD 7
           K+G   SG++ S    + S   +  A  G  W AA  A L GGG+
Sbjct: 9   KLGTLGSGSESSNDGGSESPGDAGAAAEGGGWAAAALALLTGGGE 53



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>RECX_PASMU (Q9CK20) Regulatory protein recX|
          Length = 164

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 13/53 (24%), Positives = 29/53 (54%)
 Frame = +2

Query: 77  LSTEIVNRGVEPSVPDAGSPTFSVHVRRRLPDFLQSVNLKYVRLGYHYLLSHG 235
           +S+ +++   +   PD      +V +R++ P + +  +LK  +  + Y+LSHG
Sbjct: 96  ISSALISEAEQTLAPDWQHHALTV-LRKKFPQYAEITDLKLKQKVWRYMLSHG 147



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>OVOL2_MOUSE (Q8CIV7) Transcription factor Ovo-like 2 (mOvo2) (Zinc finger|
           protein 339) (Zinc finger OVO2) (Zinc finger protein
           mOVO)
          Length = 274

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -1

Query: 183 DCRKSGSRRRTCTEKVGDPASGTDGSTPR 97
           DCR  G     C+   G+P      S+PR
Sbjct: 46  DCRSDGGSSSGCSSSAGEPGGSESSSSPR 74


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,316,529
Number of Sequences: 219361
Number of extensions: 600340
Number of successful extensions: 2224
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2223
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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