ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast76a06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1CB4A_ARATH (Q07473) Chlorophyll a-b binding protein CP29.1, chlo... 129 2e-30
2CB4B_ARATH (Q9XF88) Chlorophyll a-b binding protein CP29.2, chlo... 128 3e-30
3CB4C_ARATH (Q9S7W1) Chlorophyll a-b binding protein CP29.3, chlo... 112 2e-25
4CB12_PETHY (P13869) Chlorophyll a-b binding protein, chloroplast... 62 2e-10
5CB29_CHLRE (Q93WD2) Chlorophyll a-b binding protein CP29 62 2e-10
6CB12_LYCES (P10708) Chlorophyll a-b binding protein 7, chloropla... 57 8e-09
7CB24_ARATH (P27521) Chlorophyll a-b binding protein 4, chloropla... 47 1e-05
8CB26_ARATH (Q9XF89) Chlorophyll a-b binding protein CP26, chloro... 46 2e-05
9CB13_LYCES (P27522) Chlorophyll a-b binding protein 8, chloropla... 46 2e-05
10CB4A_LYCES (P27524) Chlorophyll a-b binding protein CP24 10A, ch... 46 2e-05
11CB4B_LYCES (P27525) Chlorophyll a-b binding protein CP24 10B, ch... 45 5e-05
12CB4_SPIOL (P36494) Chlorophyll a-b binding protein CP24, chlorop... 44 7e-05
13CB11_LYCES (P12360) Chlorophyll a-b binding protein 6A, chloropl... 44 9e-05
14LH18_EUGGR (P08976) Light-harvesting complex I LH38 proteins pre... 42 3e-04
15LH15_EUGGR (P08975) Light-harvesting complex I LH35 proteins pre... 37 0.011
16CB23_POLMU (P15195) Chlorophyll a-b binding protein type 1 membe... 34 0.094
17CB23_LYCES (P27489) Chlorophyll a-b binding protein 13, chloropl... 34 0.094
18VNUA_PRVKA (P33485) Probable nuclear antigen 34 0.094
19CB23_HORVU (P27523) Chlorophyll a-b binding protein of LHCII typ... 34 0.094
20CB2_MALDO (P15773) Chlorophyll a-b binding protein AB10, chlorop... 33 0.12
21CB2A_PINSY (P15193) Chlorophyll a-b binding protein type 2 membe... 33 0.16
22CB2_PHYPA (P20866) Chlorophyll a-b binding protein, chloroplast ... 33 0.21
23CB23_ORYSA (P27519) Chlorophyll a-b binding protein, chloroplast... 33 0.21
24CB2A_PYRPY (P24006) Chlorophyll a-b binding protein 1A, chloropl... 32 0.27
25CB23_PEA (P27520) Chlorophyll a-b binding protein 215, chloropla... 32 0.36
26CB23_APIGR (P92919) Chlorophyll a-b binding protein, chloroplast... 32 0.36
27CB21_LEMGI (P12328) Chlorophyll a-b binding protein of LHCII typ... 32 0.36
28CB2B_PINSY (P15194) Chlorophyll a-b binding protein type 2 membe... 32 0.47
29CB25_LYCES (P14279) Chlorophyll a-b binding protein 5, chloropla... 32 0.47
30CB26_PETSP (P12062) Chlorophyll a-b binding protein 37, chloropl... 32 0.47
31CB24_LYCES (P14278) Chlorophyll a-b binding protein 4, chloropla... 32 0.47
32CB23_TOBAC (P27494) Chlorophyll a-b binding protein 36, chloropl... 32 0.47
33CB21_SILPR (P12332) Chlorophyll a-b binding protein, chloroplast... 32 0.47
34CB27_TOBAC (P27491) Chlorophyll a-b binding protein 7, chloropla... 31 0.61
35CB24_PETSP (P04782) Chlorophyll a-b binding protein 25, chloropl... 31 0.61
36CB22_PETSP (P04780) Chlorophyll a-b binding protein 22L, chlorop... 31 0.61
37CB21_GOSHI (P27518) Chlorophyll a-b binding protein 151, chlorop... 31 0.80
38CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloropla... 31 0.80
39CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180, chl... 31 0.80
40COHA1_HUMAN (Q9UMD9) Collagen alpha-1(XVII) chain (Bullous pemph... 31 0.80
41CB21_PEA (P04159) Chlorophyll a-b binding protein AB96 (LHCII ty... 31 0.80
42CB2_DUNTE (P27517) Chlorophyll a-b binding protein of LHCII type... 30 1.0
43CB21_MAIZE (P12329) Chlorophyll a-b binding protein 1, chloropla... 30 1.4
44CB21_CUCSA (P08221) Chlorophyll a-b binding protein of LHCII typ... 30 1.4
45DHGY_HYPME (P36234) Glycerate dehydrogenase (EC 1.1.1.29) (NADH-... 30 1.4
46CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloropl... 30 1.4
47CB29_MAIZE (P27497) Chlorophyll a-b binding protein M9, chloropl... 30 1.4
48CB22_TOBAC (P27493) Chlorophyll a-b binding protein 21, chloropl... 30 1.4
49CB21_ORYSA (P12330) Chlorophyll a-b binding protein 1, chloropla... 30 1.4
50CB21_SOYBN (P12471) Chlorophyll a-b binding protein, chloroplast... 30 1.4
51CB2G_LYCES (P07369) Chlorophyll a-b binding protein 3C, chloropl... 30 1.4
52CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast... 30 1.4
53CB25_TOBAC (P27496) Chlorophyll a-b binding protein 50, chloropl... 30 1.4
54CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloropl... 30 1.4
55CB23_NICPL (P12469) Chlorophyll a-b binding protein C, chloropla... 30 1.4
56CB25_NICPL (P12470) Chlorophyll a-b binding protein E, chloropla... 30 1.4
57CB21_TOBAC (P27492) Chlorophyll a-b binding protein 16, chloropl... 30 1.4
58CB21_PETSP (P04779) Chlorophyll a-b binding protein 13, chloropl... 30 1.4
59CB23_SOYBN (P09756) Chlorophyll a-b binding protein 3, chloropla... 30 1.4
60CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloropla... 30 1.4
61CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor 30 1.4
62CB22_PEA (P07371) Chlorophyll a-b binding protein AB80, chloropl... 30 1.8
63CB22_HORVU (P08963) Chlorophyll a-b binding protein 2, chloropla... 30 1.8
64CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor 30 1.8
65CB21_WHEAT (P04784) Chlorophyll a-b binding protein, chloroplast... 30 1.8
66CB28_PEA (P27490) Chlorophyll a-b binding protein 8, chloroplast... 30 1.8
67HNRL1_MOUSE (Q8VDM6) Heterogeneous nuclear ribonucleoprotein U-l... 30 1.8
68CB22_MAIZE (P06671) Chlorophyll a-b binding protein, chloroplast... 29 2.3
69CO6A3_CHICK (P15989) Collagen alpha-3(VI) chain precursor 29 2.3
70CB21_SINAL (P13851) Chlorophyll a-b binding protein 1, chloropla... 29 2.3
71CB2_CHLMO (P22686) Chlorophyll a-b binding protein of LHCII type... 29 2.3
72CB23_PETSP (P04781) Chlorophyll a-b binding protein 22R, chlorop... 29 3.0
73PP1RA_RAT (O55000) Serine/threonine-protein phosphatase 1 regula... 29 3.0
74CB22_CUCSA (P08222) Chlorophyll a-b binding protein of LHCII typ... 28 4.0
75CB48_MAIZE (Q00827) Chlorophyll a-b binding protein 48, chloropl... 28 4.0
76CB25_PETSP (P04783) Chlorophyll a-b binding protein 91R, chlorop... 28 5.2
77GATA5_ARATH (Q8VZP4) GATA transcription factor 5 (AtGATA-5) 28 5.2
78RBL1_RHOPA (Q6N9J0) Ribulose bisphosphate carboxylase large chai... 28 6.8
79CB2_CHLRE (P14273) Chlorophyll a-b binding protein of LHCII type... 28 6.8
80RBL_PORCA (P50255) Ribulose bisphosphate carboxylase large chain... 28 6.8
81PP1RA_PIG (Q767K9) Serine/threonine-protein phosphatase 1 regula... 27 8.8
82CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contain... 27 8.8
83CO2A1_MOUSE (P28481) Collagen alpha-1(II) chain precursor [Conta... 27 8.8 
>CB4A_ARATH (Q07473) Chlorophyll a-b binding protein CP29.1, chloroplast|
           precursor (LHCII protein 4.1) (LHCB4.1)
          Length = 290

 Score =  129 bits (323), Expect = 2e-30
 Identities = 64/105 (60%), Positives = 78/105 (74%), Gaps = 2/105 (1%)
 Frame = +2

Query: 101 TFLGTRLADPA-PQNGRIVARFGFGXXXXX-XXXXXXXXTTDRPLWFPGAQAPEYLDGTL 274
           + +GTR+A    P +GR  A FGFG              TTDRPLW+PGA +P++LDG+L
Sbjct: 13  SIMGTRVAPGIHPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYPGAISPDWLDGSL 72

Query: 275 VGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIGTRFEDA 409
           VGDYGFDPFGLGKPAEYLQ+D+DSLDQNLA+NLA ++IGTR E A
Sbjct: 73  VGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAA 117
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>CB4B_ARATH (Q9XF88) Chlorophyll a-b binding protein CP29.2, chloroplast|
           precursor (LHCII protein 4.2) (LHCB4.2)
          Length = 287

 Score =  128 bits (322), Expect = 3e-30
 Identities = 63/102 (61%), Positives = 77/102 (75%), Gaps = 1/102 (0%)
 Frame = +2

Query: 101 TFLGTRL-ADPAPQNGRIVARFGFGXXXXXXXXXXXXXTTDRPLWFPGAQAPEYLDGTLV 277
           + +GTR+ +D +  + R  ARFGFG             + DRPLWFPGA++PEYLDG+LV
Sbjct: 12  SIMGTRVVSDISSNSSRFTARFGFGTKKASPKKAKTVIS-DRPLWFPGAKSPEYLDGSLV 70

Query: 278 GDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIGTRFE 403
           GDYGFDPFGLGKPAEYLQ+D+DSLDQNLA+NL  E+IGTR E
Sbjct: 71  GDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTE 112
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>CB4C_ARATH (Q9S7W1) Chlorophyll a-b binding protein CP29.3, chloroplast|
           precursor (LHCII protein 4.3) (LHCB4.3)
          Length = 276

 Score =  112 bits (280), Expect = 2e-25
 Identities = 55/99 (55%), Positives = 65/99 (65%), Gaps = 5/99 (5%)
 Frame = +2

Query: 110 GTRLADPAPQNGRIVARFGFGXXXXXXX-----XXXXXXTTDRPLWFPGAQAPEYLDGTL 274
           G R+ DP P  GR+ ARFGF                     DR +WFPGA  PE+LDG++
Sbjct: 14  GIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWFPGANPPEWLDGSM 73

Query: 275 VGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIG 391
           +GD GFDPFGLGKPAEYLQYD D LDQNLA+N+A +IIG
Sbjct: 74  IGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIG 112
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>CB12_PETHY (P13869) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCI type II CAB)
          Length = 270

 Score = 62.4 bits (150), Expect = 2e-10
 Identities = 25/43 (58%), Positives = 33/43 (76%)
 Frame = +2

Query: 218 DRPLWFPGAQAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDS 346
           DRPLWFPG+  PE+LDG+L GD+GFDP GLG   E L+++  +
Sbjct: 64  DRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQA 106
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>CB29_CHLRE (Q93WD2) Chlorophyll a-b binding protein CP29|
          Length = 279

 Score = 62.4 bits (150), Expect = 2e-10
 Identities = 27/48 (56%), Positives = 33/48 (68%)
 Frame = +2

Query: 227 LWFPGAQAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQN 370
           LW P    PE+LDG+L GD GFDP GL KP+E++   VD  DQN A+N
Sbjct: 51  LWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKN 98
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>CB12_LYCES (P10708) Chlorophyll a-b binding protein 7, chloroplast precursor|
           (LHCI type II CAB-7)
          Length = 270

 Score = 57.4 bits (137), Expect = 8e-09
 Identities = 23/40 (57%), Positives = 30/40 (75%)
 Frame = +2

Query: 218 DRPLWFPGAQAPEYLDGTLVGDYGFDPFGLGKPAEYLQYD 337
           DRPLWFPG+  P +LDG+L GD+GFDP GL    E L+++
Sbjct: 64  DRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWN 103
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>CB24_ARATH (P27521) Chlorophyll a-b binding protein 4, chloroplast precursor|
           (LHCI type III CAB-4) (LHCP)
          Length = 251

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 22/69 (31%), Positives = 32/69 (46%)
 Frame = +2

Query: 140 NGRIVARFGFGXXXXXXXXXXXXXTTDRPLWFPGAQAPEYLDGTLVGDYGFDPFGLGKPA 319
           +GR+     F                 +  W PG  +P+YL G+L GD GFDP GL +  
Sbjct: 27  SGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDP 86

Query: 320 EYLQYDVDS 346
           E L++ V +
Sbjct: 87  ENLKWFVQA 95
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>CB26_ARATH (Q9XF89) Chlorophyll a-b binding protein CP26, chloroplast|
           precursor (Light-harvesting complex II protein 5)
           (LHCB5) (LHCIIc)
          Length = 280

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
 Frame = +2

Query: 218 DRPLWFPG-----AQAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVE 382
           DR ++ P      ++ PEYL+G + GDYG+DPFGLGK  E           N A+  A E
Sbjct: 66  DRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPE-----------NFAKYQAFE 114

Query: 383 IIGTRF 400
           +I  R+
Sbjct: 115 LIHARW 120
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>CB13_LYCES (P27522) Chlorophyll a-b binding protein 8, chloroplast precursor|
           (LHCI type III CAB-8)
          Length = 273

 Score = 45.8 bits (107), Expect = 2e-05
 Identities = 19/33 (57%), Positives = 22/33 (66%)
 Frame = +2

Query: 218 DRPLWFPGAQAPEYLDGTLVGDYGFDPFGLGKP 316
           +R LWF   Q+  YLDG L GD+GFDP GL  P
Sbjct: 52  NRQLWFASKQSLSYLDGRLPGDFGFDPLGLSDP 84
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>CB4A_LYCES (P27524) Chlorophyll a-b binding protein CP24 10A, chloroplast|
           precursor (CAB-10A) (LHCP)
          Length = 256

 Score = 45.8 bits (107), Expect = 2e-05
 Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 6/41 (14%)
 Frame = +2

Query: 230 WFPGAQA------PEYLDGTLVGDYGFDPFGLGKPAEYLQY 334
           W P  +       PE+LDG+L GDYGFDP GLGK   +L++
Sbjct: 55  WIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKW 95
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>CB4B_LYCES (P27525) Chlorophyll a-b binding protein CP24 10B, chloroplast|
           precursor (CAB-10B) (LHCP)
          Length = 256

 Score = 44.7 bits (104), Expect = 5e-05
 Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 6/41 (14%)
 Frame = +2

Query: 230 WFPGAQA------PEYLDGTLVGDYGFDPFGLGKPAEYLQY 334
           W P  ++      PE+LDG+L GD+GFDP GLGK   +L++
Sbjct: 55  WIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKW 95
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>CB4_SPIOL (P36494) Chlorophyll a-b binding protein CP24, chloroplast|
           precursor
          Length = 261

 Score = 44.3 bits (103), Expect = 7e-05
 Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 6/41 (14%)
 Frame = +2

Query: 230 WFPGAQA------PEYLDGTLVGDYGFDPFGLGKPAEYLQY 334
           W P  +       PE+LDG+L GD+GFDP GLGK   +L++
Sbjct: 60  WIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKW 100
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>CB11_LYCES (P12360) Chlorophyll a-b binding protein 6A, chloroplast precursor|
           (LHCI type I CAB-6A) (Light-harvesting complex I 26 kDa
           protein)
          Length = 246

 Score = 43.9 bits (102), Expect = 9e-05
 Identities = 20/41 (48%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 230 WFPGAQAPEYLDGTLVGDYGFDPFGLGK-PAEYLQYDVDSL 349
           W PG   P YLDG+  GD+GFD  GLG+ PA   +Y    L
Sbjct: 49  WMPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESEL 89
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>LH18_EUGGR (P08976) Light-harvesting complex I LH38 proteins precursor|
           [Contains: LH38 protein 1; LH38 protein 2; LH38 protein
           3] (Fragment)
          Length = 530

 Score = 42.0 bits (97), Expect = 3e-04
 Identities = 17/28 (60%), Positives = 19/28 (67%)
 Frame = +2

Query: 224 PLWFPGAQAPEYLDGTLVGDYGFDPFGL 307
           PLWFP   AP +L+G   GD GFDP GL
Sbjct: 3   PLWFPNTLAPSWLNGEYYGDRGFDPAGL 30



 Score = 40.4 bits (93), Expect = 0.001
 Identities = 17/30 (56%), Positives = 18/30 (60%)
 Frame = +2

Query: 218 DRPLWFPGAQAPEYLDGTLVGDYGFDPFGL 307
           +R LWFP    P YL G   GD GFDP GL
Sbjct: 370 ERELWFPNIVPPRYLTGEAYGDKGFDPAGL 399



 Score = 33.9 bits (76), Expect = 0.094
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = +2

Query: 227 LWFPGAQAPEYLDGTLVGDYGFDPFGL 307
           LWFP A+ P  L G    D GFDP  L
Sbjct: 189 LWFPNAEPPALLTGEYPADRGFDPLNL 215
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>LH15_EUGGR (P08975) Light-harvesting complex I LH35 proteins precursor|
           [Contains: LH35 protein 1; LH35 protein 2] (Fragment)
          Length = 331

 Score = 37.0 bits (84), Expect = 0.011
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +2

Query: 227 LWFPGAQAPEYLDGTLVGDYGFDPFGL-GKPAEYLQYDVDSLDQNLAQNLAV 379
           +WFPGAQ P +L G    D GFDP  +   P  Y +  V  +       LA+
Sbjct: 161 VWFPGAQPPAHLTGEYPADRGFDPLSVAADPTVYARMRVSEVFHARLSMLAI 212
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>CB23_POLMU (P15195) Chlorophyll a-b binding protein type 1 member F3,|
           chloroplast precursor (DE Chlorophyll a-b binding
           protein type I F3) (CAB-F3) (LHCP)
          Length = 265

 Score = 33.9 bits (76), Expect = 0.094
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = +2

Query: 215 TDRPLW---FPGAQAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEI 385
           +DRPL+   F G+  P YL G   GDYG+D  GL    E             A+N  +E+
Sbjct: 52  SDRPLYLGPFSGSP-PSYLSGEFPGDYGWDTAGLSADPE-----------TFAKNRELEV 99

Query: 386 IGTRF 400
           I +R+
Sbjct: 100 IHSRW 104
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>CB23_LYCES (P27489) Chlorophyll a-b binding protein 13, chloroplast precursor|
           (LHCII type III CAB-13)
          Length = 265

 Score = 33.9 bits (76), Expect = 0.094
 Identities = 20/53 (37%), Positives = 26/53 (49%)
 Frame = +2

Query: 242 AQAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIGTRF 400
           AQ P YL+G   GDYG+D  GL    E             A+N A+E+I  R+
Sbjct: 61  AQTPSYLNGEFPGDYGWDTAGLSADPE-----------AFAKNRALEVIHGRW 102
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>VNUA_PRVKA (P33485) Probable nuclear antigen|
          Length = 1733

 Score = 33.9 bits (76), Expect = 0.094
 Identities = 21/53 (39%), Positives = 23/53 (43%)
 Frame = +1

Query: 10   RHPNARKGRGGQS*EERVSSHGFVGGRRGEHVPRDPAGGPGAAERAHRGAVRL 168
            R    R GRGG+             GR G   PR   GGPG   RA RG VR+
Sbjct: 1442 RGRGGRGGRGGR-------------GRGGGRAPRGGGGGPGGGGRAGRGEVRV 1481
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>CB23_HORVU (P27523) Chlorophyll a-b binding protein of LHCII type III,|
           chloroplast precursor (CAB)
          Length = 268

 Score = 33.9 bits (76), Expect = 0.094
 Identities = 20/53 (37%), Positives = 26/53 (49%)
 Frame = +2

Query: 242 AQAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIGTRF 400
           AQ P YL+G   GDYG+D  GL    E             A+N A+E+I  R+
Sbjct: 64  AQTPSYLNGEFPGDYGWDTAGLSADPE-----------AFARNRALEVIHGRW 105
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>CB2_MALDO (P15773) Chlorophyll a-b binding protein AB10, chloroplast|
           precursor (LHCII type I CAB-AB10) (LHCP)
          Length = 268

 Score = 33.5 bits (75), Expect = 0.12
 Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 6/100 (6%)
 Frame = +2

Query: 116 RLADPA---PQNGRIVARFGFGXXXXXXXXXXXXXTTDRPLWFPG---AQAPEYLDGTLV 277
           ++A P+   P +  ++   GF              T DR + + G    + P YL G   
Sbjct: 19  KIAKPSKLNPISSTLIVTAGFTMLKHAAKSKVSSSTCDRRVKYLGPFSGEWPSYLTGEFP 78

Query: 278 GDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIGTR 397
           GDYG+D  GL            +  +  A+N  +E+I +R
Sbjct: 79  GDYGWDTAGL-----------SAYPETFAKNRELEVIHSR 107
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>CB2A_PINSY (P15193) Chlorophyll a-b binding protein type 2 member 1A,|
           chloroplast precursor (Chlorophyll a-b binding protein
           type II 1A) (CAB) (LHCP)
          Length = 278

 Score = 33.1 bits (74), Expect = 0.16
 Identities = 29/113 (25%), Positives = 40/113 (35%), Gaps = 14/113 (12%)
 Frame = +2

Query: 104 FLGTRLADPAPQNG------------RIVARFGFGXXXXXXXXXXXXXTTDRPLWFP--G 241
           F G +L+   PQN             R+  R   G               DR L+     
Sbjct: 16  FAGAQLSSVKPQNNQLLGVGGAHGEARLTMRKATGKKSVAASIDSPWYGPDRVLYLGPFS 75

Query: 242 AQAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIGTRF 400
            + P YL G   GDYG+D  GL    E             A+N  +E+I +R+
Sbjct: 76  GEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKNRELEVIHSRW 117
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>CB2_PHYPA (P20866) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 269

 Score = 32.7 bits (73), Expect = 0.21
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = +2

Query: 218 DRPLWFP--GAQAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIG 391
           DRP +      + P YL+G   GDYG+D  GL    E             A+N  +E+I 
Sbjct: 56  DRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPE-----------TFARNRELEVIH 104

Query: 392 TRF 400
            R+
Sbjct: 105 ARW 107
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>CB23_ORYSA (P27519) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 263

 Score = 32.7 bits (73), Expect = 0.21
 Identities = 30/108 (27%), Positives = 40/108 (37%), Gaps = 8/108 (7%)
 Frame = +2

Query: 101 TFLGTRLADPAPQNGRIVARFGFGXXXXXXXXXXXXXTT------DRPLWFP--GAQAPE 256
           +FLGT     AP+   +V R G                       DRP +      Q P 
Sbjct: 11  SFLGT-----APRRDELVRRVGDSGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPS 65

Query: 257 YLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIGTRF 400
           YL G   GDYG+D  GL    E             A+N  +E+I +R+
Sbjct: 66  YLTGEFPGDYGWDTAGLSADPE-----------TFARNRELEVIHSRW 102
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>CB2A_PYRPY (P24006) Chlorophyll a-b binding protein 1A, chloroplast precursor|
           (LHCII type II CAB-1A) (LHCP)
          Length = 278

 Score = 32.3 bits (72), Expect = 0.27
 Identities = 28/113 (24%), Positives = 40/113 (35%), Gaps = 14/113 (12%)
 Frame = +2

Query: 104 FLGTRLADPAPQNG------------RIVARFGFGXXXXXXXXXXXXXTTDRPLWFP--G 241
           F G +L+   PQN             R+  R   G               DR ++     
Sbjct: 16  FAGAQLSSVKPQNNQLLGVGGAHGEARLTMRKATGRKSVAASIDSPWYGPDRVMYLGPFS 75

Query: 242 AQAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIGTRF 400
            + P YL G   GDYG+D  GL    E             A+N  +E+I +R+
Sbjct: 76  GEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKNRELEVIHSRW 117
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>CB23_PEA (P27520) Chlorophyll a-b binding protein 215, chloroplast precursor|
           (LHCII type II CAB-215) (LHCP)
          Length = 265

 Score = 32.0 bits (71), Expect = 0.36
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = +2

Query: 218 DRPLWFP--GAQAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIG 391
           DRP +      Q P YL G   GDYG+D  GL    E             A+N  +E+I 
Sbjct: 53  DRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPE-----------TFARNRELEVIH 101

Query: 392 TRF 400
           +R+
Sbjct: 102 SRW 104
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>CB23_APIGR (P92919) Chlorophyll a-b binding protein, chloroplast precursor|
           (Allergen Api g 3)
          Length = 264

 Score = 32.0 bits (71), Expect = 0.36
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +2

Query: 245 QAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIGTRF 400
           +AP YL G   GDYG+D  GL    E             A+N  +E+I +R+
Sbjct: 63  EAPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKNRELEVIHSRW 103
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>CB21_LEMGI (P12328) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP)
          Length = 264

 Score = 32.0 bits (71), Expect = 0.36
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = +2

Query: 218 DRPLWFP--GAQAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIG 391
           DRP +      Q P YL G   GDYG+D  GL    E             A+N  +E+I 
Sbjct: 52  DRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKNRELEVIH 100

Query: 392 TRF 400
           +R+
Sbjct: 101 SRW 103
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>CB2B_PINSY (P15194) Chlorophyll a-b binding protein type 2 member 1B,|
           chloroplast precursor (Chlorophyll a-b binding protein
           type II 1B) (CAB) (LHCP)
          Length = 274

 Score = 31.6 bits (70), Expect = 0.47
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +2

Query: 245 QAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIGTRF 400
           + P YL G   GDYG+D  GL    E           N A+N  +E+I  R+
Sbjct: 73  EPPSYLTGEFPGDYGWDTAGLSADPE-----------NFAKNRELEVIHCRW 113
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>CB25_LYCES (P14279) Chlorophyll a-b binding protein 5, chloroplast precursor|
           (LHCII type I CAB-5) (LHCP) (Fragment)
          Length = 237

 Score = 31.6 bits (70), Expect = 0.47
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = +2

Query: 218 DRPLWFP--GAQAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIG 391
           DRP +      Q P YL G   GDYG+D  GL    E             A+N  +E+I 
Sbjct: 25  DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE-----------TFARNRELEVIH 73

Query: 392 TRF 400
            R+
Sbjct: 74  CRW 76
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>CB26_PETSP (P12062) Chlorophyll a-b binding protein 37, chloroplast precursor|
           (LHCII type I CAB-37) (LHCP)
          Length = 265

 Score = 31.6 bits (70), Expect = 0.47
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = +2

Query: 218 DRPLWFP--GAQAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIG 391
           DRP +      Q P YL G   GDYG+D  GL    E             A+N  +E+I 
Sbjct: 53  DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE-----------TFARNRELEVIH 101

Query: 392 TRF 400
            R+
Sbjct: 102 CRW 104
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>CB24_LYCES (P14278) Chlorophyll a-b binding protein 4, chloroplast precursor|
           (LHCII type I CAB-4) (LHCP)
          Length = 265

 Score = 31.6 bits (70), Expect = 0.47
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = +2

Query: 218 DRPLWFP--GAQAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIG 391
           DRP +      Q P YL G   GDYG+D  GL    E             A+N  +E+I 
Sbjct: 53  DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE-----------TFARNRELEVIH 101

Query: 392 TRF 400
            R+
Sbjct: 102 CRW 104
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>CB23_TOBAC (P27494) Chlorophyll a-b binding protein 36, chloroplast precursor|
           (LHCII type I CAB-36) (LHCP)
          Length = 265

 Score = 31.6 bits (70), Expect = 0.47
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = +2

Query: 218 DRPLWFP--GAQAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIG 391
           DRP +      Q P YL G   GDYG+D  GL    E             A+N  +E+I 
Sbjct: 53  DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE-----------TFARNRELEVIH 101

Query: 392 TRF 400
            R+
Sbjct: 102 CRW 104
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>CB21_SILPR (P12332) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP) (Fragment)
          Length = 205

 Score = 31.6 bits (70), Expect = 0.47
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = +2

Query: 218 DRPLWFP--GAQAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIG 391
           DRP +      Q P YL G   GDYG+D  GL    E             A+N  +E+I 
Sbjct: 52  DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKNRELEVIH 100

Query: 392 TRF 400
            R+
Sbjct: 101 CRW 103
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>CB27_TOBAC (P27491) Chlorophyll a-b binding protein 7, chloroplast precursor|
           (LHCII type I CAB-7) (LHCP)
          Length = 267

 Score = 31.2 bits (69), Expect = 0.61
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +2

Query: 245 QAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIGTRF 400
           +AP YL G   GDYG+D  GL    E             A+N  +E+I  R+
Sbjct: 66  EAPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKNRELEVIHCRW 106
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>CB24_PETSP (P04782) Chlorophyll a-b binding protein 25, chloroplast precursor|
           (LHCII type I CAB-25) (LHCP)
          Length = 266

 Score = 31.2 bits (69), Expect = 0.61
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +2

Query: 245 QAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIGTRF 400
           +AP YL G   GDYG+D  GL    E             A+N  +E+I  R+
Sbjct: 65  EAPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKNRELEVIHCRW 105
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>CB22_PETSP (P04780) Chlorophyll a-b binding protein 22L, chloroplast precursor|
           (LHCII type I CAB-22L) (LHCP)
          Length = 267

 Score = 31.2 bits (69), Expect = 0.61
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +2

Query: 245 QAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIGTRF 400
           +AP YL G   GDYG+D  GL    E             A+N  +E+I  R+
Sbjct: 66  EAPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKNRELEVIHCRW 106
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>CB21_GOSHI (P27518) Chlorophyll a-b binding protein 151, chloroplast precursor|
           (LHCII type II CAB-151) (LHCP)
          Length = 265

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = +2

Query: 218 DRPLWFP--GAQAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIG 391
           DRP +      Q P YL G   GDYG+D  GL    E             A+N  +E+I 
Sbjct: 53  DRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKNRELEVIH 101

Query: 392 TRF 400
            R+
Sbjct: 102 CRW 104
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>CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (CAB-140) (LHCP)
          Length = 267

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +2

Query: 245 QAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIGTRF 400
           ++P YL G   GDYG+D  GL    E             A+N  +E+I +R+
Sbjct: 65  ESPSYLTGEFPGDYGWDTAGLSADPE-----------TFARNRELEVIHSRW 105
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>CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180, chloroplast|
           precursor (LHCII type I CAB-165/180)
          Length = 267

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +2

Query: 245 QAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIGTRF 400
           ++P YL G   GDYG+D  GL    E             A+N  +E+I +R+
Sbjct: 65  ESPSYLTGEFPGDYGWDTAGLSADPE-----------TFARNRELEVIHSRW 105
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>COHA1_HUMAN (Q9UMD9) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen|
           2) (180 kDa bullous pemphigoid antigen 2)
          Length = 1497

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +1

Query: 16  PNARKGRGGQS*EERVSSHGFVGGRRGEHVPRDPAGGPGAAERAHRGA 159
           P   KG+ G   +  +       GR G   PR  AG PG+ E+  RGA
Sbjct: 601 PQGPKGQKGSVGDPGMEGPMGQRGREGPMGPRGEAGPPGSGEKGERGA 648
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>CB21_PEA (P04159) Chlorophyll a-b binding protein AB96 (LHCII type I|
           CAB-AB96) (LHCP) (Major 15) (Fragment)
          Length = 228

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +2

Query: 245 QAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIGTRF 400
           ++P YL G   GDYG+D  GL    E             A+N  +E+I +R+
Sbjct: 27  ESPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKNRELEVIHSRW 67
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>CB2_DUNTE (P27517) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP)
          Length = 253

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 233 FPGAQAPEYLDGTLVGDYGFDPFGL-GKPAEYLQY 334
           F     PEYL G   GDYG+D  GL   P  + +Y
Sbjct: 45  FSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARY 79
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>CB21_MAIZE (P12329) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 262

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +2

Query: 245 QAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIGTRF 400
           + P YL G   GDYG+D  GL    E             A+N  +E+I +R+
Sbjct: 61  EPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKNRELEVIHSRW 101
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>CB21_CUCSA (P08221) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP) (Fragment)
          Length = 255

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +2

Query: 245 QAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIGTRF 400
           + P YL G   GDYG+D  GL    E             A+N  +E+I +R+
Sbjct: 54  EPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKNRELEVIHSRW 94
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>DHGY_HYPME (P36234) Glycerate dehydrogenase (EC 1.1.1.29) (NADH-dependent|
           hydroxypyruvate reductase) (HPR) (GDH) (Hydroxypyruvate
           dehydrogenase) (Glyoxylate reductase)
          Length = 321

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = +2

Query: 212 TTDRPLWFPGAQAPEYLDGTLVGDYGFDPFG--LGKPAEYLQYDVDSLDQNLAQN 370
           T   P W P     E LD   +G YGF   G  L K A+    D+D  D + A +
Sbjct: 129 TRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASS 183
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>CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloroplast precursor|
           (LHCII type I CAB-1B) (LHCP)
          Length = 265

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +2

Query: 245 QAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIGTRF 400
           ++P YL G   GDYG+D  GL    E             A+N  +E+I  R+
Sbjct: 64  ESPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKNRELEVIHCRW 104
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>CB29_MAIZE (P27497) Chlorophyll a-b binding protein M9, chloroplast precursor|
           (LHCII type I CAB-M9) (LHCP)
          Length = 265

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +2

Query: 245 QAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIGTRF 400
           + P YL G   GDYG+D  GL    E             A+N  +E+I +R+
Sbjct: 64  EPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKNRELEVIHSRW 104
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>CB22_TOBAC (P27493) Chlorophyll a-b binding protein 21, chloroplast precursor|
           (LHCII type I CAB-21) (LHCP)
          Length = 265

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +2

Query: 245 QAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIGTRF 400
           ++P YL G   GDYG+D  GL    E             A+N  +E+I  R+
Sbjct: 64  ESPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKNRELEVIHCRW 104
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>CB21_ORYSA (P12330) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 265

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +2

Query: 245 QAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIGTRF 400
           + P YL G   GDYG+D  GL    E             A+N  +E+I +R+
Sbjct: 64  EPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKNRELEVIHSRW 104
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>CB21_SOYBN (P12471) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP) (Fragment)
          Length = 245

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +2

Query: 245 QAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIGTRF 400
           + P YL G   GDYG+D  GL    E             A+N  +E+I +R+
Sbjct: 44  EPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKNRELEVIHSRW 84
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>CB2G_LYCES (P07369) Chlorophyll a-b binding protein 3C, chloroplast precursor|
           (LHCII type I CAB-3C) (LHCP)
          Length = 267

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +2

Query: 245 QAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIGTRF 400
           ++P YL G   GDYG+D  GL    E             A+N  +E+I  R+
Sbjct: 66  ESPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKNRELEVIHCRW 106
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>CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 267

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +2

Query: 245 QAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIGTRF 400
           ++P YL G   GDYG+D  GL    E             A+N  +E+I  R+
Sbjct: 66  ESPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKNRELEVIHCRW 106
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>CB25_TOBAC (P27496) Chlorophyll a-b binding protein 50, chloroplast precursor|
           (LHCII type I CAB-50) (LHCP)
          Length = 267

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +2

Query: 245 QAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIGTRF 400
           ++P YL G   GDYG+D  GL    E             A+N  +E+I  R+
Sbjct: 66  ESPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKNRELEVIHCRW 106
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>CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloroplast precursor|
           (LHCII type I CAB-40) (LHCP)
          Length = 267

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +2

Query: 245 QAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIGTRF 400
           ++P YL G   GDYG+D  GL    E             A+N  +E+I  R+
Sbjct: 66  ESPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKNRELEVIHCRW 106
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>CB23_NICPL (P12469) Chlorophyll a-b binding protein C, chloroplast precursor|
           (LHCII type I CAB-C) (LHCP)
          Length = 267

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +2

Query: 245 QAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIGTRF 400
           ++P YL G   GDYG+D  GL    E             A+N  +E+I  R+
Sbjct: 66  ESPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKNRELEVIHCRW 106
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>CB25_NICPL (P12470) Chlorophyll a-b binding protein E, chloroplast precursor|
           (LHCII type I CAB-E) (LHCP)
          Length = 266

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +2

Query: 245 QAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIGTRF 400
           ++P YL G   GDYG+D  GL    E             A+N  +E+I  R+
Sbjct: 65  ESPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKNRELEVIHCRW 105
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>CB21_TOBAC (P27492) Chlorophyll a-b binding protein 16, chloroplast precursor|
           (LHCII type I CAB-16) (LHCP)
          Length = 266

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +2

Query: 245 QAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIGTRF 400
           ++P YL G   GDYG+D  GL    E             A+N  +E+I  R+
Sbjct: 65  ESPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKNRELEVIHCRW 105
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>CB21_PETSP (P04779) Chlorophyll a-b binding protein 13, chloroplast precursor|
           (LHCII type I CAB-13) (LHCP)
          Length = 266

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 245 QAPEYLDGTLVGDYGFDPFGL-GKPAEYLQYDVDSLDQNLAQNLAVEIIGTRF 400
           +AP YL G   GDYG+D  GL   PA +            A+N  +E+I  R+
Sbjct: 65  EAPSYLTGEFPGDYGWDTAGLSADPATF------------AKNRKLEVIHCRW 105
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>CB23_SOYBN (P09756) Chlorophyll a-b binding protein 3, chloroplast precursor|
           (LHCII type I CAB-3) (LHCP)
          Length = 263

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +2

Query: 245 QAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIGTRF 400
           + P YL G   GDYG+D  GL    E             A+N  +E+I +R+
Sbjct: 62  EPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKNRELEVIHSRW 102
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>CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 261

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +2

Query: 245 QAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIGTRF 400
           + P YL G   GDYG+D  GL    E             A+N  +E+I +R+
Sbjct: 60  EPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKNRELEVIHSRW 100
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>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor|
          Length = 1464

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +1

Query: 28  KGRGGQS*EERVSSHGFVGGRRGEHVPRDPAGGPGA 135
           KG GG      ++      G RGEH P  PAG PGA
Sbjct: 778 KGEGGSPGLPGIAGPRGGPGERGEHGPPGPAGFPGA 813
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>CB22_PEA (P07371) Chlorophyll a-b binding protein AB80, chloroplast|
           precursor (LHCII type I CAB-AB80) (LHCP)
          Length = 269

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 245 QAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIGTRF 400
           ++P YL G   GDYG+D  GL    E             ++N  +E+I +R+
Sbjct: 68  ESPSYLTGEFPGDYGWDTAGLSADPE-----------TFSKNRELEVIHSRW 108
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>CB22_HORVU (P08963) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 264

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +2

Query: 245 QAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIGTRF 400
           ++P YL G   GDYG+D  GL    E             A+N  +E+I  R+
Sbjct: 63  ESPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKNRELEVIHGRW 103
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>CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor|
          Length = 1463

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +1

Query: 28  KGRGGQS*EERVSSHGFVGGRRGEHVPRDPAGGPGA 135
           KG GG      ++      G RGEH P  PAG PGA
Sbjct: 778 KGEGGAPGLPGIAGPRGGPGERGEHGPPGPAGFPGA 813
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>CB21_WHEAT (P04784) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 266

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = +2

Query: 215 TDRPLWFP--GAQAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEII 388
           +DR L+      + P YL G   GDYG+D  GL    E             A+N  +E+I
Sbjct: 53  SDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKNRELEVI 101

Query: 389 GTRF 400
             R+
Sbjct: 102 HCRW 105
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>CB28_PEA (P27490) Chlorophyll a-b binding protein 8, chloroplast precursor|
           (LHCII type I CAB-8)
          Length = 268

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 245 QAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIGTRF 400
           ++P YL G   GDYG+D  GL    E             ++N  +E+I +R+
Sbjct: 67  ESPSYLTGEFPGDYGWDTAGLSADPE-----------TFSKNRELEVIHSRW 107
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>HNRL1_MOUSE (Q8VDM6) Heterogeneous nuclear ribonucleoprotein U-like protein 1|
          Length = 859

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +1

Query: 28  KGRGGQS*EERVSSHGFVGGRRGEHVPRDPAGGPGAAERAHRG 156
           +GRGG    +R  + G  GG RG    R   GG G     +RG
Sbjct: 618 RGRGGGGGFQRYDNRGPPGGNRGGFQNRGGGGGSGGGGGNYRG 660
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>CB22_MAIZE (P06671) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 265

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +2

Query: 245 QAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIGTRF 400
           + P YL G   GDYG+D  GL    E             A+N  +E+I  R+
Sbjct: 64  EPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKNRELEVIHCRW 104
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>CO6A3_CHICK (P15989) Collagen alpha-3(VI) chain precursor|
          Length = 3137

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +1

Query: 19   NARKGRGGQS*EERVSSHGFVG--GRRGEHVPRDPAGGPG-AAERAHRG 156
            + R G GG   + R    GFVG  G +G    R  AGGPG    R  RG
Sbjct: 2301 DGRDGIGGPGPKGRKGERGFVGYPGPKGGPGDRGGAGGPGPKGNRGRRG 2349
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>CB21_SINAL (P13851) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 266

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +2

Query: 245 QAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIGTRF 400
           + P YL G   GDYG+D  GL    E             A+N  +E+I  R+
Sbjct: 64  EPPSYLTGEFPGDYGWDTAGLSADPE-----------TFARNRELEVIHCRW 104
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>CB2_CHLMO (P22686) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP)
          Length = 256

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 15/37 (40%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
 Frame = +2

Query: 218 DRPLWFP--GAQAPEYLDGTLVGDYGFDPFGLGKPAE 322
           DR  W        P YL G   GDYG+D  GL    E
Sbjct: 43  DRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPE 79
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>CB23_PETSP (P04781) Chlorophyll a-b binding protein 22R, chloroplast precursor|
           (LHCII type I CAB-22R) (LHCP)
          Length = 267

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +2

Query: 245 QAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIGTRF 400
           +AP YL G    DYG+D  GL    E             A+N  +E+I  R+
Sbjct: 66  EAPSYLTGEFPSDYGWDTAGLSADPE-----------TFAKNRELEVIHCRW 106
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>PP1RA_RAT (O55000) Serine/threonine-protein phosphatase 1 regulatory subunit|
           10 (Phosphatase 1 nuclear targeting subunit) (PNUTS
           protein) (MHC class I region proline-rich protein CAT53)
          Length = 872

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +1

Query: 16  PNARKGRGGQS*EERVSSHGFVGGRRGEHVPRD-PAGGPGAAERAHRG 156
           PN R G GG          G VGG  G H P + P G  G+  R+H G
Sbjct: 734 PNGRGGPGGG---------GMVGG--GGHRPHEGPGGSMGSGHRSHEG 770
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>CB22_CUCSA (P08222) Chlorophyll a-b binding protein of LHCII type 1|
           (Chlorophyll a-b binding protein of LHCII type I) (CAB)
           (LHCP) (Fragment)
          Length = 206

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 245 QAPEYLDGTLVGDYGFDPFGLGKPAE 322
           + P YL G   GDYG+D  GL    E
Sbjct: 5   EPPSYLTGEFPGDYGWDTAGLSADPE 30
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>CB48_MAIZE (Q00827) Chlorophyll a-b binding protein 48, chloroplast precursor|
           (LHCII type I CAB-48) (LHCP)
          Length = 264

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +2

Query: 251 PEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIGTRF 400
           P YL G   GDYG+D  GL    E             A+N  +E+I  R+
Sbjct: 65  PSYLTGEFPGDYGWDTEGLSADPE-----------TFAKNRELEVIHCRW 103
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>CB25_PETSP (P04783) Chlorophyll a-b binding protein 91R, chloroplast precursor|
           (LHCII type I CAB-91R) (LHCP)
          Length = 267

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +2

Query: 245 QAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIGTRF 400
           +AP YL G   GDYG+D   L    E             A+N  +E+I  R+
Sbjct: 66  EAPSYLTGEFPGDYGWDTAELSADPE-----------TFAKNRELEVIHCRW 106
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>GATA5_ARATH (Q8VZP4) GATA transcription factor 5 (AtGATA-5)|
          Length = 308

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +2

Query: 230 WFPGAQAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDS 346
           W P A+A E+L G L GD+ FD  GL    +    D+DS
Sbjct: 3   WLPEAEAEEHLKGILSGDF-FD--GLTNHLDCPLEDIDS 38
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>RBL1_RHOPA (Q6N9J0) Ribulose bisphosphate carboxylase large chain (EC|
           4.1.1.39) (RuBisCO large subunit)
          Length = 485

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 296 PFGLGKPAEYLQYDVDSLDQNLAQNLAVEIIGTRF 400
           P  LG+   Y+ YD+D  +     NL   IIG  F
Sbjct: 92  PNSLGQYFAYIAYDLDLFEPGSISNLTASIIGNVF 126
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>CB2_CHLRE (P14273) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP)
          Length = 253

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 251 PEYLDGTLVGDYGFDPFGLGKPAE 322
           P YL G   GDYG+D  GL    E
Sbjct: 54  PAYLTGEFPGDYGWDTAGLSADPE 77
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>RBL_PORCA (P50255) Ribulose bisphosphate carboxylase large chain (EC|
           4.1.1.39) (RuBisCO large subunit) (Fragment)
          Length = 441

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 323 YLQYDVDSLDQNLAQNLAVEIIGTRF 400
           Y+ YD+D  ++ L  NL   IIG  F
Sbjct: 57  YIAYDIDLFEEGLYANLTASIIGNVF 82
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>PP1RA_PIG (Q767K9) Serine/threonine-protein phosphatase 1 regulatory subunit|
           10 (MHC class I region proline-rich protein CAT53)
           (Protein FB19)
          Length = 925

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
 Frame = +1

Query: 16  PNARKGRGGQS*EERVSSHGFVGGRRGEHVPRD-PAGGPGAAERAHRG 156
           P+   G G  S        G  GG  G H P + P GG G   R H G
Sbjct: 756 PHEGPGGGMSSGSGHRPHEGPGGGMGGGHRPHEGPGGGMGGGHRPHEG 803
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>CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contains:|
           Chondrocalcin]
          Length = 1419

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +1

Query: 31  GRGGQS*EERVSSHGFVGGRRGEHVPRDPAGGPG-AAERAHRGA 159
           G  GQ+ E  ++      G +GE  P  P G PG A E   RGA
Sbjct: 382 GPKGQTGEPGIAGFKGEQGPKGETGPAGPQGAPGPAGEEGKRGA 425
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>CO2A1_MOUSE (P28481) Collagen alpha-1(II) chain precursor [Contains:|
           Chondrocalcin]
          Length = 1459

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +1

Query: 31  GRGGQS*EERVSSHGFVG--GRRGEHVPRDPAGGPG-AAERAHRGA 159
           G  GQ+ E  ++  GF G  G +GE  P  P G PG A E   RGA
Sbjct: 422 GPKGQAGEPGIA--GFKGDQGPKGETGPAGPQGAPGPAGEEGKRGA 465


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,793,651
Number of Sequences: 219361
Number of extensions: 650642
Number of successful extensions: 2140
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 1888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2133
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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