ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast75h09 |
|---|---|
| Clone Library Name | barley_pub |
>7SB1_SOYBN (P13917) Basic 7S globulin precursor (Bg) (SBg7S) [Contains: Basic| 7S globulin high-kDa subunit; Basic 7S globulin low-kDa subunit] Length = 427 Score = 68.6 bits (166), Expect = 4e-12 Identities = 34/86 (39%), Positives = 47/86 (54%) Frame = +2 Query: 119 VVLPVRKDSATGQYLTGFRQRTPQVPVTAVLDLGGASLWVDCDAGYVSSSYAGVPCASKL 298 VVLPV+ D +TG + ++RTP + V ++DL G LWV+C+ Y S +Y C S Sbjct: 34 VVLPVQNDGSTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYSSKTYQAPFCHSTQ 93 Query: 299 CRLAKSVACATSCVGKPSPGCLNDTC 376 C A + C SC PGC +TC Sbjct: 94 CSRANTHQC-LSCPAASRPGCHKNTC 118
>7SBG2_SOYBN (Q8RVH5) Basic 7S globulin 2 precursor (Bg) (SBg7S) [Contains:| Basic 7S globulin 2 high-kDa subunit; Basic 7S globulin 2 low-kDa subunit] Length = 433 Score = 67.8 bits (164), Expect = 6e-12 Identities = 33/86 (38%), Positives = 48/86 (55%) Frame = +2 Query: 119 VVLPVRKDSATGQYLTGFRQRTPQVPVTAVLDLGGASLWVDCDAGYVSSSYAGVPCASKL 298 +VLPV+ D++TG + ++RTP + V ++DL G LWV+C+ Y S +Y C S Sbjct: 41 LVLPVQNDASTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQHYSSKTYQAPFCHSTQ 100 Query: 299 CRLAKSVACATSCVGKPSPGCLNDTC 376 C A + C SC PGC +TC Sbjct: 101 CSRANTHQC-LSCPAASRPGCHKNTC 125
>NEP1_NEPGR (Q766C3) Aspartic proteinase nepenthesin-1 precursor (EC 3.4.23.-)| (Nepenthesin-I) Length = 437 Score = 44.3 bits (103), Expect = 7e-05 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 13/90 (14%) Frame = +2 Query: 104 NNPSAVVLPVRKDSATGQYLTGFRQRTPQVPVTAVLDLGGASLWVDCDA----------- 250 N PS V V + G+YL TP P +A++D G +W C Sbjct: 79 NGPSGVETSVY--AGDGEYLMNLSIGTPAQPFSAIMDTGSDLIWTQCQPCTQCFNQSTPI 136 Query: 251 --GYVSSSYAGVPCASKLCRLAKSVACATS 334 SSS++ +PC+S+LC+ S C+ + Sbjct: 137 FNPQGSSSFSTLPCSSQLCQALSSPTCSNN 166
>NEP2_NEPGR (Q766C2) Aspartic proteinase nepenthesin-2 precursor (EC 3.4.23.-)| (Nepenthesin-II) Length = 438 Score = 34.7 bits (78), Expect = 0.057 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 13/71 (18%) Frame = +2 Query: 152 GQYLTGFRQRTPQVPVTAVLDLGGASLWVDCDA-------------GYVSSSYAGVPCAS 292 G+YL TP +A++D G +W C+ SSS++ +PC S Sbjct: 94 GEYLMNVAIGTPDSSFSAIMDTGSDLIWTQCEPCTQCFSQPTPIFNPQDSSSFSTLPCES 153 Query: 293 KLCRLAKSVAC 325 + C+ S C Sbjct: 154 QYCQDLPSETC 164
>MYO9B_HUMAN (Q13459) Myosin-9B (Myosin IXb) (Unconventional myosin-9b)| Length = 2158 Score = 30.0 bits (66), Expect = 1.4 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Frame = -1 Query: 313 LREAAQLXXXXXXXXXXXXVPGVAVHPE---RGASKVEHGRHRDLGRSLPEARQVLP 152 LREA +L PG HPE RGAS +RDL + ++ + LP Sbjct: 698 LREAGRLRAERAEKAAGMSSPGAQSHPEELPRGASTPSEKLYRDLHNQMIKSIKGLP 754
>YAG1_SCHPO (Q09866) Hypothetical WD-repeat protein C12G12.01c in chromosome I| Length = 905 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = -1 Query: 232 ERGASKVEHGRHRDLGRSLPEARQVLPRCAV 140 +RG SK +H LG+S P Q LP+C+V Sbjct: 802 QRGVSKAGPAKH--LGKSCPHCGQPLPKCSV 830
>STAN_DROME (Q9V5N8) Protocadherin-like wing polarity protein stan precursor| (Protein starry night) (Protein flamingo) Length = 3574 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%) Frame = +2 Query: 239 DCDAGYVSSSYAGV----PCASKLCRLAKSVACATSC 337 +CD+GYV + A + PCAS +CR S+ C Sbjct: 1989 ECDSGYVGTDCAPICTVRPCASGVCRANTSLPRGYDC 2025
>CARPV_CANAL (P10977) Vacuolar aspartic protease precursor (EC 3.4.23.-)| (Aspartate protease) (ACP) Length = 419 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%) Frame = +2 Query: 155 QYLTGFRQRTPQVPVTAVLDLGGASLWV---DC 244 QY T + TP P +LD G ++LWV DC Sbjct: 103 QYFTEIQIGTPGQPFKVILDTGSSNLWVPSQDC 135
>CO5A3_HUMAN (P25940) Collagen alpha-3(V) chain precursor| Length = 1745 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +1 Query: 109 PERRGAAGEEGQRNGAVPDGLPAANAPGPGD 201 P ++G GE+G + P GLP P PGD Sbjct: 1243 PGKKGPPGEDGAKGSVGPTGLPGDLGP-PGD 1272
>CI010_HUMAN (Q9NZB2) Protein C9orf10| Length = 1069 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = +2 Query: 110 PSAVVLPVRKDSATGQYLTGFRQRTPQVPVTAVLD 214 PSAVV + A G + G RQR PQ P+ ++D Sbjct: 15 PSAVVPVELQKLARGSLVGGGRQRPPQTPLRLLVD 49
>MATN3_HUMAN (O15232) Matrilin-3 precursor| Length = 486 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = +1 Query: 112 ERRGAAGEEGQR-NGAVPDGLPAANAPGPG 198 E RG G G+R + A PDG PA+ PG Sbjct: 40 ETRGPGGSPGRRPSPAAPDGAPASGTSEPG 69
>KR102_HUMAN (P60368) Keratin-associated protein 10-2 (Keratin-associated| protein 10.2) (High sulfur keratin-associated protein 10.2) (Keratin-associated protein 18-2) (Keratin-associated protein 18.2) Length = 255 Score = 28.1 bits (61), Expect = 5.4 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 2/33 (6%) Frame = +2 Query: 284 CASKLCR--LAKSVACATSCVGKPSPGCLNDTC 376 C S C+ KS+ C C G SP C +C Sbjct: 183 CVSVCCKPVCCKSICCVPVCSGASSPCCQQSSC 215
>YL54_CAEEL (P34434) Hypothetical protein F44E2.4| Length = 1283 Score = 28.1 bits (61), Expect = 5.4 Identities = 19/46 (41%), Positives = 22/46 (47%) Frame = +2 Query: 242 CDAGYVSSSYAGVPCASKLCRLAKSVACATSCVGKPSPGCLNDTCS 379 CDA SSS S LC L S+ ATSC+ P +TCS Sbjct: 170 CDASKTSSS-------STLCGLVTSIQTATSCLETIRP----ETCS 204
>YIQ9_YEAST (P40442) Hypothetical protein YIL169C precursor| Length = 995 Score = 27.7 bits (60), Expect = 7.0 Identities = 21/89 (23%), Positives = 38/89 (42%) Frame = +2 Query: 113 SAVVLPVRKDSATGQYLTGFRQRTPQVPVTAVLDLGGASLWVDCDAGYVSSSYAGVPCAS 292 +A+ L + SA GQY + + T+V+ S+ + SSS + S Sbjct: 10 AALALALYSQSALGQYYSNSTSISSNSSSTSVVSSSSGSVSISSSIAETSSSATDI--LS 67 Query: 293 KLCRLAKSVACATSCVGKPSPGCLNDTCS 379 + + A S + +S VG S ++ + S Sbjct: 68 SITQSASSTSGVSSSVGPSSSSVVSSSVS 96
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +1 Query: 121 GAAGEEGQRNGAVPDGLPAANAPGP 195 GA N A P G P AN+PGP Sbjct: 275 GAPASPAGSNPARPGGFPGANSPGP 299
>NAPSA_MOUSE (O09043) Napsin-A precursor (EC 3.4.23.-) (Kidney-derived aspartic| protease-like protein) (KDAP-1) (KAP) Length = 419 Score = 27.7 bits (60), Expect = 7.0 Identities = 19/46 (41%), Positives = 22/46 (47%) Frame = +2 Query: 101 GNNPSAVVLPVRKDSATGQYLTGFRQRTPQVPVTAVLDLGGASLWV 238 G NPS V P+ K T QY TP T V D G ++LWV Sbjct: 57 GGNPSFV--PLSKFMNT-QYFGTIGLGTPPQNFTVVFDTGSSNLWV 99
>RHBD1_RAT (O88779) Rhomboid-related protein 1 (EC 3.4.21.105) (RRP)| (Rhomboid-like protein 1) (Fragment) Length = 164 Score = 27.3 bits (59), Expect = 9.1 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 5/68 (7%) Frame = +2 Query: 158 YLTGFRQRTPQVPVT---AVLDLGGASLWVDCDA--GYVSSSYAGVPCASKLCRLAKSVA 322 YL G + V +T A + G ++ C A V ++AG+ C KL R+ ++ Sbjct: 36 YLAGVLAGSLTVSITDMRAPVVGGSGGVYALCSAHLANVVMNWAGMRCPYKLLRMVLALV 95 Query: 323 CATSCVGK 346 C +S VG+ Sbjct: 96 CMSSEVGR 103
>NEP1_NEPDI (P69476) Aspartic proteinase nepenthesin-1 (EC 3.4.23.-)| (Nepenthesin-I) (Fragments) Length = 164 Score = 27.3 bits (59), Expect = 9.1 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 9/54 (16%) Frame = +2 Query: 152 GQYLTGFRQRTPQVPVTAVLDLGGASLWVDCDAG---------YVSSSYAGVPC 286 G+YL TP P +A++D G +W SSS++ +PC Sbjct: 15 GEYLMXLSIGTPAQPFSAIMDTGSDLIWTQXQPXTQXFXQSDPQGSSSFSTLPC 68
>IL3RA_MOUSE (P26952) Interleukin-3 receptor class 2 alpha chain precursor| (Interleukin-3 receptor class II alpha chain) (CD123 antigen) Length = 396 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = -2 Query: 237 TQSEAPPRSSTAVTGTWGVRCRKPVRYCPVALSFLTGSTTALG 109 ++SE PR ++ + WG+ C P PV + +T T LG Sbjct: 303 SRSEVYPRKLSSWSEAWGLVC--PPEVMPVKTALVTSVATVLG 343
>SGG_DROME (P18431) Protein kinase shaggy (EC 2.7.11.1) (Protein zeste-white 3)| Length = 1067 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/31 (38%), Positives = 16/31 (51%) Frame = +1 Query: 106 QPERRGAAGEEGQRNGAVPDGLPAANAPGPG 198 QP+ +G A G +G G A+A GPG Sbjct: 975 QPQSQGTAAAAGSGSGGATAGTGGASAGGPG 1005
>RHBD1_HUMAN (O75783) Rhomboid-related protein 1 (EC 3.4.21.105) (RRP)| (Rhomboid-like protein 1) Length = 438 Score = 27.3 bits (59), Expect = 9.1 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 5/68 (7%) Frame = +2 Query: 158 YLTGFRQRTPQVPVT---AVLDLGGASLWVDCDA--GYVSSSYAGVPCASKLCRLAKSVA 322 YL G + V +T A + G ++ C A V ++AG+ C KL R+ ++ Sbjct: 288 YLAGVLAGSLTVSITDMRAPVVGGSGGVYALCSAHLANVVMNWAGMRCPYKLLRMVLALV 347 Query: 323 CATSCVGK 346 C +S VG+ Sbjct: 348 CMSSEVGR 355
>GCP3_HUMAN (Q96CW5) Gamma-tubulin complex component 3 (GCP-3) (Spindle pole| body protein Spc98 homolog) (hSpc98) (hGCP3) (h104p) Length = 907 Score = 27.3 bits (59), Expect = 9.1 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%) Frame = -2 Query: 342 PTQLVAQATLFARRHSLDAHGTP--A*DEDTYPASQSTQSEAPPRSSTAVTGTWGV 181 P+++ + ATLFA+ DAH TP T P S +S +SS +V G+ G+ Sbjct: 108 PSKVSSYATLFAQALPRDAHSTPYYYARPQTLPLSYQDRSAQSAQSSGSV-GSSGI 162
>GDA1_ASPFU (Q8TGG8) Probable guanosine-diphosphatase (EC 3.6.1.42) (GDPase)| Length = 503 Score = 27.3 bits (59), Expect = 9.1 Identities = 15/45 (33%), Positives = 19/45 (42%) Frame = +2 Query: 149 TGQYLTGFRQRTPQVPVTAVLDLGGASLWVDCDAGYVSSSYAGVP 283 T YL G + P AV DLGG S + + S G+P Sbjct: 201 TTNYLLGKIGGPDETPTAAVFDLGGGSTQIVFQPTFPKSKSGGMP 245
>TRPB_HALSA (Q9HSC0) Tryptophan synthase beta chain (EC 4.2.1.20)| Length = 430 Score = 27.3 bits (59), Expect = 9.1 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = +2 Query: 167 GFRQRTPQVPVTAVLDLGGASLWVDCDAGYVSSS 268 G + P V + AV + GG+ L VD DAGY +S Sbjct: 264 GTHEPAPDVDLLAV-EAGGSRLGVDDDAGYAPNS 296
>KR108_HUMAN (P60410) Keratin-associated protein 10-8 (Keratin-associated| protein 10.8) (High sulfur keratin-associated protein 10.8) (Keratin-associated protein 18-8) (Keratin-associated protein 18.8) Length = 259 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/33 (39%), Positives = 15/33 (45%) Frame = +2 Query: 278 VPCASKLCRLAKSVACATSCVGKPSPGCLNDTC 376 V C S C K V C + C G SP C +C Sbjct: 122 VCCKSNCC---KPVCCVSICSGASSPCCQQSSC 151
>RHBD1_MOUSE (Q8VC82) Rhomboid-related protein 1 (EC 3.4.21.105) (RRP)| (Rhomboid-like protein 1) Length = 373 Score = 27.3 bits (59), Expect = 9.1 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 5/68 (7%) Frame = +2 Query: 158 YLTGFRQRTPQVPVT---AVLDLGGASLWVDCDA--GYVSSSYAGVPCASKLCRLAKSVA 322 YL G + V +T A + G ++ C A V ++AG+ C KL R+ ++ Sbjct: 223 YLAGVLAGSLTVSITDMRAPVVGGSGGVYALCSAHLANVVMNWAGMRCPYKLLRMVLALV 282 Query: 323 CATSCVGK 346 C +S VG+ Sbjct: 283 CMSSEVGR 290 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,004,805 Number of Sequences: 219361 Number of extensions: 663360 Number of successful extensions: 2830 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 2627 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2825 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 1391514312 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
