>PVRL1_PIG (Q9GL76) Poliovirus receptor-related protein 1 precursor (Herpes|
           virus entry mediator C) (HveC) (Nectin-1) (CD111
           antigen)
          Length = 515

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 195 SCSSATAAAPMALSWFQHLAGEGEEKE 115
           +C+SA    P  +SW  HL GE E +E
Sbjct: 171 TCTSANGKPPSVVSWETHLKGEAEYQE 197

>PVRL1_MOUSE (Q9JKF6) Poliovirus receptor-related protein 1 precursor (Herpes|
           virus entry mediator C) (HveC) (Nectin-1) (CD111
           antigen)
          Length = 515

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 195 SCSSATAAAPMALSWFQHLAGEGEEKE 115
           +C+SA    P A+SW   L GE E +E
Sbjct: 171 TCTSANGKPPSAVSWETRLKGEAEYQE 197

>GAG_AVIMC (P03323) Gag polyprotein [Contains: Core protein p19; Core protein|
           p10; Core protein p27]
          Length = 453

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
 Frame = -1

Query: 192 CSSATAAAP----MALSWFQHLAGEGEEKERAGDETQNSER 82
           C+ ATA+AP    +    +  LAG GE++ + GD  + +E+
Sbjct: 163 CNCATASAPPPPYVGSGLYPSLAGVGEQQGQGGDTPRGAEQ 203

>GAG_AVEV2 (P06937) Gag polyprotein (Core polyprotein) [Contains: Core protein|
           p19 beta; Core protein p10] (Fragment)
          Length = 188

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
 Frame = -1

Query: 192 CSSATAAAP----MALSWFQHLAGEGEEKERAGDETQNSER 82
           C+ ATA+AP    +    +  LAG GE++ + GD  + +E+
Sbjct: 112 CNCATASAPPPPYVGSGLYPSLAGVGEQQGQGGDTPRGAEQ 152

>GAG_FUJSV (P03326) Gag polyprotein [Contains: Core protein p19; Core protein|
           p10; Core protein p27]
          Length = 309

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
 Frame = -1

Query: 192 CSSATAAAP----MALSWFQHLAGEGEEKERAGDETQNSER 82
           C+ ATA+AP    +    +  LAG GE++ + GD  + +E+
Sbjct: 159 CNCATASAPPPPYVGSGLYPSLAGVGEQQGQGGDTPRGAEQ 199

>GAGC_AVISC (P05433) P47(GAG-CRK) protein|
          Length = 440

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
 Frame = -1

Query: 192 CSSATAAAP----MALSWFQHLAGEGEEKERAGDETQNSER 82
           C+ ATA+AP    +    +  LAG GE++ + GD  + +E+
Sbjct: 165 CNCATASAPPPPYVGSGLYPSLAGVGEQQGQGGDTPRGAEQ 205


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,769,624
Number of Sequences: 219361
Number of extensions: 144720
Number of successful extensions: 322
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 80,573,946
effective HSP length: 40
effective length of database: 71,799,506
effective search space used: 1723188144
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)