ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast75h06 |
|---|---|
| Clone Library Name | barley_pub |
>ARLC_MAIZE (P13526) Anthocyanin regulatory Lc protein| Length = 610 Score = 34.3 bits (77), Expect = 0.14 Identities = 22/59 (37%), Positives = 30/59 (50%) Frame = +3 Query: 222 GLGIEDVSGGDSGLGQSNLGKRGRDEQSSSGPKSKACREKMRREKLNDRFLELCSVMNS 398 G G + GG +G Q E S +G K+ E+ RREKLN+ FL L S++ S Sbjct: 392 GGGAWESCGGATGAAQ---------EMSGTGTKNHVMSERKRREKLNEMFLVLKSLLPS 441
>POPB_RALSO (Q9RBS1) Protein popB| Length = 174 Score = 31.2 bits (69), Expect = 1.2 Identities = 16/60 (26%), Positives = 33/60 (55%) Frame = +3 Query: 243 SGGDSGLGQSNLGKRGRDEQSSSGPKSKACREKMRREKLNDRFLELCSVMNSGKHGGLED 422 +GGD+ ++ GKR RD+++ +++ ++K +R+ ND + ++G G ED Sbjct: 83 TGGDTKPDSTSGGKRKRDDETDPNAETEGGKKKKKRDDENDSSQAGGAGSSAGSSGSPED 142
>RNAS1_CAMDR (P67928) Ribonuclease pancreatic (EC 3.1.27.5) (RNase 1) (RNase A)| Length = 124 Score = 31.2 bits (69), Expect = 1.2 Identities = 16/45 (35%), Positives = 24/45 (53%) Frame = +3 Query: 294 DEQSSSGPKSKACREKMRREKLNDRFLELCSVMNSGKHGGLEDVR 428 D SSS S C + M+R ++ D + C +N+ H LEDV+ Sbjct: 14 DSYSSSSSNSNYCNQMMKRREMTDGW---CKPVNTFIHESLEDVQ 55
>RNAS1_CAMBA (P67929) Ribonuclease pancreatic (EC 3.1.27.5) (RNase 1) (RNase A)| Length = 124 Score = 31.2 bits (69), Expect = 1.2 Identities = 16/45 (35%), Positives = 24/45 (53%) Frame = +3 Query: 294 DEQSSSGPKSKACREKMRREKLNDRFLELCSVMNSGKHGGLEDVR 428 D SSS S C + M+R ++ D + C +N+ H LEDV+ Sbjct: 14 DSYSSSSSNSNYCNQMMKRREMTDGW---CKPVNTFIHESLEDVQ 55
>ARRS_MAIZE (P13027) Anthocyanin regulatory R-S protein| Length = 612 Score = 30.4 bits (67), Expect = 2.0 Identities = 22/53 (41%), Positives = 29/53 (54%) Frame = +3 Query: 240 VSGGDSGLGQSNLGKRGRDEQSSSGPKSKACREKMRREKLNDRFLELCSVMNS 398 V+GG G +S G G Q S K+ E+ RREKLN+ FL L S++ S Sbjct: 394 VAGG--GAWESCGGATGA-AQEMSATKNHVMSERKRREKLNEMFLVLKSLLPS 443
>RS3_PELLD (Q3B6F6) 30S ribosomal protein S3| Length = 252 Score = 30.0 bits (66), Expect = 2.6 Identities = 13/29 (44%), Positives = 20/29 (68%) Frame = +3 Query: 282 KRGRDEQSSSGPKSKACREKMRREKLNDR 368 KR ++ +S SGP+S+ R + RR + NDR Sbjct: 223 KRIKERRSDSGPRSRNDRSQKRRRRPNDR 251
>EGL1_ARATH (Q9CAD0) Transcription factor EGL1 (ENHANCER OF GLABRA3) (Basic| helix-loop-helix protein 2) (bHLH2) (AtbHLH002) (AtMyc-146) Length = 596 Score = 30.0 bits (66), Expect = 2.6 Identities = 14/24 (58%), Positives = 18/24 (75%) Frame = +3 Query: 327 ACREKMRREKLNDRFLELCSVMNS 398 A EK RREKLN+RF+ L S++ S Sbjct: 407 ALSEKKRREKLNERFMTLRSIIPS 430
>SRCA_HUMAN (Q86TD4) Sarcalumenin precursor| Length = 932 Score = 30.0 bits (66), Expect = 2.6 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 3/84 (3%) Frame = +3 Query: 66 EP*PASQPASHGGGSLGATAAETMDGGDPV---EEFXXXXXXXXXXXXXSAFCDGGLGIE 236 EP PA++ ++ GG+ A +T + P E+ + +GG+ E Sbjct: 269 EPGPAAEASAEPGGAQSVKAGDTEESQAPEMTEEDADEASSEEESGDGSGSEEEGGVPSE 328 Query: 237 DVSGGDSGLGQSNLGKRGRDEQSS 308 + S DSG G S+ G E+++ Sbjct: 329 EESEEDSGDGASSEEAEGASEEAT 352
>TWST1_PONPY (Q8MIB9) Twist-related protein 1| Length = 203 Score = 30.0 bits (66), Expect = 2.6 Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 3/123 (2%) Frame = +3 Query: 78 ASQPASHGGGSLGATAAETMDGGDPVEEFXXXXXXXXXXXXXSAFCDGGLGIEDVSGGDS 257 +S+ ++ GG G A+ + GGD SA C GG G GG Sbjct: 42 SSRRSAGGGAGPGGAASGGVGGGDEP-----GSPAQGKRGKKSAGCGGGGG-----GGAG 91 Query: 258 GLGQSNLGKRGRDEQSSSGPKSKACREKMRREKLNDRFLELCSV---MNSGKHGGLEDVR 428 G S G E+ + RE+ R + LN+ F L + + S K ++ ++ Sbjct: 92 GGSSSGGGSPQSYEELQTQRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLK 151 Query: 429 LAS 437 LA+ Sbjct: 152 LAA 154
>TWIST_BRABE (O96642) Twist-related protein (BBtwist)| Length = 196 Score = 29.6 bits (65), Expect = 3.4 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 3/77 (3%) Frame = +3 Query: 216 DGGLGIEDVSGGDSGLGQSNLGKRGRDEQSSSGPKSKACREKMRREKLNDRFLELCSV-- 389 DG G V GG SG + K E + RE+ R + LN+ F L + Sbjct: 64 DGSTGGGSVGGGKSGKNRKKTSKAESFEDLQNQRVLANVRERQRTQSLNEAFSSLRKIIP 123 Query: 390 -MNSGKHGGLEDVRLAS 437 + S K ++ ++LA+ Sbjct: 124 TLPSDKLSKIQTLKLAA 140
>RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 427 Score = 29.6 bits (65), Expect = 3.4 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Frame = +3 Query: 219 GGLGIEDVSGGDSGLGQSNLGKRGRDEQSSSGPKSKACREKMRRE-KLNDRFLEL 380 GGLG V GG+ +G+ +GR QS + + REK R + K +R EL Sbjct: 229 GGLGTSRVGGGEEIVGEQQ--PQGRTSQSEEPSRPREEREKSREKGKERERSREL 281
>TWST1_HYLCO (Q8MIE7) Twist-related protein 1| Length = 204 Score = 29.3 bits (64), Expect = 4.4 Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 4/124 (3%) Frame = +3 Query: 78 ASQPASHGGGSLGATAAETMDGGDPVEEFXXXXXXXXXXXXXSAFCDGGLGIEDVSGGDS 257 +S+ ++ GG G A + GGD SA C GG +GG Sbjct: 41 SSRRSAGGGAGPGGAAGGGVGGGDEP-----GSPAQGKRGKKSAGCGGG----GSAGGGG 91 Query: 258 GLGQSNLGKRGRDEQSSSGPKSKA-CREKMRREKLNDRFLELCSV---MNSGKHGGLEDV 425 G G S+ G + + + A RE+ R + LN+ F L + + S K ++ + Sbjct: 92 GGGSSSGGGSPQSYEELQTQRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTL 151 Query: 426 RLAS 437 +LA+ Sbjct: 152 KLAA 155
>RGS2_PIG (Q3S853) Regulator of G-protein signaling 2 (RGS2)| Length = 212 Score = 28.5 bits (62), Expect = 7.6 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = +3 Query: 294 DEQSSSGPKSKACREKMRREKLND 365 D+ + +GPKS+ REKM+R L D Sbjct: 17 DKSAGTGPKSEEKREKMKRTLLKD 40
>DAXX_MOUSE (O35613) Death domain-associated protein 6 (Daxx)| Length = 739 Score = 28.5 bits (62), Expect = 7.6 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Frame = +3 Query: 243 SGGDSGLGQSNLG-KRGRDEQSSSGPKSKACREKMRREKLNDRFLELCSVMNS 398 +G GL Q G R + SS S+ C K+ EKL + FLELC S Sbjct: 34 TGPGPGLSQQATGLSEPRVDGGSSNSGSRKCY-KLDNEKLFEEFLELCKTETS 85
>CD2L5_HUMAN (Q14004) Cell division cycle 2-like protein kinase 5 (EC 2.7.11.22)| (CDC2-related protein kinase 5) (Cholinesterase-related cell division controller) Length = 1512 Score = 28.5 bits (62), Expect = 7.6 Identities = 26/101 (25%), Positives = 34/101 (33%), Gaps = 8/101 (7%) Frame = +3 Query: 75 PASQPASHGGGSLGATAAETMDGGDPVEEFXXXXXXXXXXXXXSAFCDGGLGIEDVSGGD 254 P Q GG S G ++ D + +A GG G G Sbjct: 124 PQPQQDGGGGASSGGGVTPLVEYEDVSSQSEQGLLLGGASAATAATAAGGTG----GSGG 179 Query: 255 SGLGQSNLGKRG--------RDEQSSSGPKSKACREKMRRE 353 S S +RG RD +SSSG + RE RR+ Sbjct: 180 SPASSSGTQRRGEGSERRPRRDRRSSSGRSKERHREHRRRD 220
>CCD93_RAT (Q5BJT7) Coiled-coil domain-containing protein 93| Length = 629 Score = 28.5 bits (62), Expect = 7.6 Identities = 13/28 (46%), Positives = 19/28 (67%) Frame = +3 Query: 297 EQSSSGPKSKACREKMRREKLNDRFLEL 380 +QS + K KMRR++LND++LEL Sbjct: 569 KQSRMKMEKKKQENKMRRDQLNDQYLEL 596
>CCD93_MOUSE (Q7TQK5) Coiled-coil domain-containing protein 93| Length = 629 Score = 28.5 bits (62), Expect = 7.6 Identities = 13/28 (46%), Positives = 19/28 (67%) Frame = +3 Query: 297 EQSSSGPKSKACREKMRREKLNDRFLEL 380 +QS + K KMRR++LND++LEL Sbjct: 569 KQSRMKMEKKKQENKMRRDQLNDQYLEL 596
>ALL2_DERFA (Q00855) Mite group 2 allergen Der f 2 precursor (Der f II)| Length = 146 Score = 28.5 bits (62), Expect = 7.6 Identities = 11/43 (25%), Positives = 21/43 (48%) Frame = -2 Query: 435 MLAEHLQDHRACQNS*QNIIQETCHSVSPSAFSRGKPLTLDQM 307 ++A+ + N + ++ + CH P RGKP TL+ + Sbjct: 15 VVADQVDVKDCANNEIKKVMVDGCHGSDPCIIHRGKPFTLEAL 57
>CCD93_HUMAN (Q567U6) Coiled-coil domain-containing protein 93| Length = 631 Score = 28.5 bits (62), Expect = 7.6 Identities = 13/28 (46%), Positives = 19/28 (67%) Frame = +3 Query: 297 EQSSSGPKSKACREKMRREKLNDRFLEL 380 +QS + K KMRR++LND++LEL Sbjct: 571 KQSRMKMEKKKQENKMRRDQLNDQYLEL 598
>FUS_HUMAN (P35637) RNA-binding protein FUS (Oncogene FUS) (Oncogene TLS)| (Translocated in liposarcoma protein) (POMp75) (75 kDa DNA-pairing protein) Length = 526 Score = 28.1 bits (61), Expect = 9.9 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%) Frame = +3 Query: 219 GGLGIEDVSGG--DSGLGQSNLGKRGRDEQSSSG 314 GG G +D SGG G GQ + G RGR G Sbjct: 192 GGYGNQDQSGGGGSGGYGQQDRGGRGRGGSGGGG 225
>DAXX_RAT (Q8VIB2) Death domain-associated protein 6 (Daxx)| Length = 731 Score = 28.1 bits (61), Expect = 9.9 Identities = 21/53 (39%), Positives = 26/53 (49%) Frame = +3 Query: 240 VSGGDSGLGQSNLGKRGRDEQSSSGPKSKACREKMRREKLNDRFLELCSVMNS 398 VS G G S G S+SG S+ C K+ EKL + FLELC + S Sbjct: 32 VSPGPEASGPSE--SHGDGGSSNSG--SRKCY-KLENEKLFEEFLELCKMQTS 79
>WHRN_HUMAN (Q9P202) Whirlin (Autosomal recessive deafness type 31 protein)| Length = 907 Score = 28.1 bits (61), Expect = 9.9 Identities = 17/54 (31%), Positives = 28/54 (51%) Frame = +3 Query: 204 SAFCDGGLGIEDVSGGDSGLGQSNLGKRGRDEQSSSGPKSKACREKMRREKLND 365 S D G + + SG D+G +++ RGR S+ KS++ +E R E+ D Sbjct: 751 SQLSDSGQTLSEDSGVDAGEAEASAPGRGRQSVST---KSRSSKELPRNERPTD 801
>HEN1_MOUSE (Q02576) Helix-loop-helix protein 1 (HEN1) (Nescient helix loop| helix 1) (NSCL-1) Length = 133 Score = 28.1 bits (61), Expect = 9.9 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 17/73 (23%) Frame = +3 Query: 213 CDGGLGIEDVSGGDSGLGQ---SNLGKRGRDEQSSSGPKSK--------------ACREK 341 C GG G + GD G+ Q S LG+ GR + + + A RE+ Sbjct: 26 CGGGPGPDGAGSGDPGVVQVRSSELGESGRKDLQHLSREERRRRRRATAKYRTAHATRER 85 Query: 342 MRREKLNDRFLEL 380 +R E N F EL Sbjct: 86 IRVEAFNLAFAEL 98 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,601,361 Number of Sequences: 219361 Number of extensions: 755366 Number of successful extensions: 2537 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2413 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2532 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2570413340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
