ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast75h05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC092675.2| Homo sapiens BAC clone RP11-629A22 from 2, comple... 44 0.095
2gb|CP000097.1| Synechococcus sp. CC9902, complete genome 42 0.38
3gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome 40 1.5
4gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome 40 1.5
5gb|AC130601.2| Oryza sativa (japonica cultivar-group) chromosome... 40 1.5
6dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.5
7gb|AF366565.1| Triticum aestivum aquaporin PIP2 (Pip2) mRNA, com... 40 1.5
8gb|AC163991.3| Mus musculus chromosome 15, clone RP24-119L11, co... 38 5.9
9emb|AM039801.1| Ficus insipida microsatellite DNA, clone FinsI12 38 5.9
10emb|AL035252.5|HS738P15 Human DNA sequence from clone RP4-738P15... 38 5.9
11gb|AC019206.4| Homo sapiens BAC clone RP11-401N16 from 2, comple... 38 5.9
12emb|AL731805.8| Mouse DNA sequence from clone RP23-358E19 on chr... 38 5.9

>gb|AC092675.2| Homo sapiens BAC clone RP11-629A22 from 2, complete sequence
          Length = 153551

 Score = 44.1 bits (22), Expect = 0.095
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 85     gcacaaggcaagctgagtccgg 106
              ||||||||||||||||||||||
Sbjct: 123511 gcacaaggcaagctgagtccgg 123532



to top

>gb|CP000097.1| Synechococcus sp. CC9902, complete genome
          Length = 2234828

 Score = 42.1 bits (21), Expect = 0.38
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 38      gagatcgatccatcgaggagc 58
               |||||||||||||||||||||
Sbjct: 1020005 gagatcgatccatcgaggagc 1019985



to top

>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome
          Length = 4222334

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    atcagctgagatcgatccat 50
             ||||||||||||||||||||
Sbjct: 67055 atcagctgagatcgatccat 67074



to top

>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome
          Length = 4222645

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    atcagctgagatcgatccat 50
             ||||||||||||||||||||
Sbjct: 66856 atcagctgagatcgatccat 66875



to top

>gb|AC130601.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0108E17,
              complete sequence
          Length = 139829

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 41     atcgatccatcgaggagctagcta 64
              ||||||||||||| ||||||||||
Sbjct: 101271 atcgatccatcgatgagctagcta 101248



to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 41       atcgatccatcgaggagctagcta 64
                ||||||||||||| ||||||||||
Sbjct: 25032418 atcgatccatcgatgagctagcta 25032395



to top

>gb|AF366565.1| Triticum aestivum aquaporin PIP2 (Pip2) mRNA, complete cds
          Length = 1071

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 94  aagctgagtccggatgccatcgacaacgaagt 125
           ||||| |||||||| ||||| |||||||||||
Sbjct: 17  aagctaagtccggaggccatggacaacgaagt 48



to top

>gb|AC163991.3| Mus musculus chromosome 15, clone RP24-119L11, complete sequence
          Length = 152173

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 82    gcagcacaaggcaagctga 100
             |||||||||||||||||||
Sbjct: 91581 gcagcacaaggcaagctga 91599



to top

>emb|AM039801.1| Ficus insipida microsatellite DNA, clone FinsI12
          Length = 437

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 9  caatctccgccactgcaga 27
          |||||||||||||||||||
Sbjct: 64 caatctccgccactgcaga 82



to top

>emb|AL035252.5|HS738P15 Human DNA sequence from clone RP4-738P15 on chromosome 20p11.2-11.22
             Contains a novel gene (LOC284798), a novel pseudogene, the
             ENTPD6 gene for ectonucleoside triphosphate
             diphosphohydrolase 6 (putative function) and two CpG
             islands, complete sequence
          Length = 108487

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 82    gcagcacaaggcaagctgagtcc 104
             |||||||||| ||||||||||||
Sbjct: 82904 gcagcacaagacaagctgagtcc 82926



to top

>gb|AC019206.4| Homo sapiens BAC clone RP11-401N16 from 2, complete sequence
          Length = 207818

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 17    gccactgcagattaatcag 35
             |||||||||||||||||||
Sbjct: 35760 gccactgcagattaatcag 35742



to top

>emb|AL731805.8| Mouse DNA sequence from clone RP23-358E19 on chromosome 11, complete
             sequence
          Length = 111002

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 89    aaggcaagctgagtccggatgcc 111
             ||||||||||||||| |||||||
Sbjct: 34468 aaggcaagctgagtctggatgcc 34490


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 745,128
Number of Sequences: 3902068
Number of extensions: 745128
Number of successful extensions: 45296
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45190
Number of HSP's gapped (non-prelim): 106
length of query: 126
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 105
effective length of database: 17,151,101,840
effective search space: 1800865693200
effective search space used: 1800865693200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top