>UL56_HHV11 (P10240) Protein UL56|
          Length = 197

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 21/70 (30%), Positives = 30/70 (42%)
 Frame = +2

Query: 119 PTPQNDGFGDDNGSTEEKALKARRRESDPAAALAAARHEFGEHGGVNMSIEASATFTVME 298
           PT   +G   + G + + A +A RR +   A   A R  FG  G +   +    T  V  
Sbjct: 64  PTSSGEGEASERGRSRQAAQRAARR-ARRRAERRAQRRSFGPGGLLATPLFLPETRLVAP 122

Query: 299 PDTMRRLFTG 328
           PD  R L +G
Sbjct: 123 PDITRDLLSG 132

>FTHS_STAAW (Q8NW37) Formate--tetrahydrofolate ligase (EC 6.3.4.3)|
           (Formyltetrahydrofolate synthetase) (FHS) (FTHFS)
          Length = 555

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 137 GFGDDNGSTEEKALKARRRESDPAAALAAAR-HEFGEHGGV 256
           GFG D G+ +   +KAR    DPAA +  A       HGGV
Sbjct: 300 GFGSDLGAEKFMDIKAREAGFDPAAVVVVATIRALKMHGGV 340

>FTHS_STAAS (Q6G8J5) Formate--tetrahydrofolate ligase (EC 6.3.4.3)|
           (Formyltetrahydrofolate synthetase) (FHS) (FTHFS)
          Length = 555

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 137 GFGDDNGSTEEKALKARRRESDPAAALAAAR-HEFGEHGGV 256
           GFG D G+ +   +KAR    DPAA +  A       HGGV
Sbjct: 300 GFGSDLGAEKFMDIKAREAGFDPAAVVVVATIRALKMHGGV 340

>FTHS_STAAR (Q6GFX6) Formate--tetrahydrofolate ligase (EC 6.3.4.3)|
           (Formyltetrahydrofolate synthetase) (FHS) (FTHFS)
          Length = 555

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 137 GFGDDNGSTEEKALKARRRESDPAAALAAAR-HEFGEHGGV 256
           GFG D G+ +   +KAR    DPAA +  A       HGGV
Sbjct: 300 GFGSDLGAEKFMDIKAREAGFDPAAVVVVATIRALKMHGGV 340

>LEU3_SYMTH (Q67JY2) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM|
           dehydrogenase) (IMDH) (3-IPM-DH)
          Length = 368

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
 Frame = +2

Query: 59  PTVPMAHVLAAAEPLTLLKRPTP-----QNDGFGDDNGSTEEKALKARRRESDPAAALAA 223
           P V + H+LA    + +L+RP        ++ FGD    ++E A+        P+A+L A
Sbjct: 218 PDVEVEHLLADNAAMQILRRPGDFDVMLASNLFGDF--LSDEAAMLTGSIGLLPSASLGA 275

Query: 224 ARHEFGEHGGVNMSIEASA 280
           AR+ FG   G    I  SA
Sbjct: 276 ARNRFGLPKGFYEPIHGSA 294

>SEMG1_HUMAN (P04279) Semenogelin-1 precursor (Semenogelin I) (SGI) [Contains:|
           Alpha-inhibin-92; Alpha-inhibin-31; Seminal basic
           protein]
          Length = 462

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +2

Query: 110 LKRPTPQNDGFGDDNGSTEEKALKARRRESDPAAALAAARHEFGEHGGVNMSI 268
           ++ P P+ + +  +N   E    ++  RE D  +     RH+ G HGG+++ I
Sbjct: 388 IQAPNPKQEPWHGENAKGESG--QSTNREQDLLSHEQKGRHQHGSHGGLDIVI 438

>RS16_RHILO (Q98E70) 30S ribosomal protein S16|
          Length = 133

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = +2

Query: 41  KHPVIRPTVPMAHVLAAAEPLTLLKRPTPQNDGFGDDNGSTEEKALKARRRESDPAAALA 220
           KH +     P   VL   +   L KR    N    +     +E+A   ++ + D AAA+A
Sbjct: 59  KHWLSHGAQPTDRVLRFLDEAGLAKRDARSNPKKAEPGKKAQERAALLKKAQEDAAAAVA 118

Query: 221 AA 226
           AA
Sbjct: 119 AA 120

>RS16_RHIME (Q92L43) 30S ribosomal protein S16|
          Length = 124

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 16/65 (24%), Positives = 29/65 (44%)
 Frame = +2

Query: 41  KHPVIRPTVPMAHVLAAAEPLTLLKRPTPQNDGFGDDNGSTEEKALKARRRESDPAAALA 220
           +H + +   P   V+   +   L KRP   N          +E+A +A+++  + AAA +
Sbjct: 60  QHWIAQGAQPTDRVMRFLDQAGLAKRPARNNPTKAQPGKKAQERAAEAKQKAEEAAAAAS 119

Query: 221 AARHE 235
            A  E
Sbjct: 120 EAAAE 124

>FTHS_STAES (Q8CNV9) Formate--tetrahydrofolate ligase (EC 6.3.4.3)|
           (Formyltetrahydrofolate synthetase) (FHS) (FTHFS)
          Length = 555

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 137 GFGDDNGSTEEKALKARRRESDPAAALAAAR-HEFGEHGGV 256
           GFG D G+ +   +KAR    DP+A +  A       HGGV
Sbjct: 300 GFGSDLGAEKFMNIKAREAGFDPSAVVVVATIRALKMHGGV 340

>FTHS_STAEQ (Q5HNH4) Formate--tetrahydrofolate ligase (EC 6.3.4.3)|
           (Formyltetrahydrofolate synthetase) (FHS) (FTHFS)
          Length = 555

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 137 GFGDDNGSTEEKALKARRRESDPAAALAAAR-HEFGEHGGV 256
           GFG D G+ +   +KAR    DP+A +  A       HGGV
Sbjct: 300 GFGSDLGAEKFMNIKAREAGFDPSAVVVVATIRALKMHGGV 340

>FTHS_STAAC (Q5HF42) Formate--tetrahydrofolate ligase (EC 6.3.4.3)|
           (Formyltetrahydrofolate synthetase) (FHS) (FTHFS)
          Length = 555

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 137 GFGDDNGSTEEKALKARRRESDPAAALAAAR-HEFGEHGGV 256
           GFG D G+ +   +K R    DPAA +  A       HGGV
Sbjct: 300 GFGSDLGAEKFMDIKVREAGFDPAAVVVVATIRALKMHGGV 340

>YEN1_SCHPO (O13695) Hypothetical serine-rich protein C11G7.01 in chromosome I|
          Length = 536

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = +2

Query: 152 NGSTEEKALKARRRESDPAAALAAARHEFGEHGG 253
           NGS   + L A   ES PA   A A  E  EH G
Sbjct: 416 NGSNFSEGLSASPFESGPAVGAAGAAAEAAEHSG 449

>EI2BE_HUMAN (Q13144) Translation initiation factor eIF-2B epsilon subunit|
           (eIF-2B GDP-GTP exchange factor)
          Length = 721

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +2

Query: 128 QNDG-FGDDNGSTEEKALKARRRESDPAAALAAARHEFGEHGGVNMSIE 271
           ++DG F DD+G+ +EK  K + +  +PA   AA +    +  G+NM  E
Sbjct: 460 EDDGEFSDDSGADQEKD-KVKMKGYNPAEVGAAGKGYLWKAAGMNMEEE 507

>POLG_KUNJM (P14335) Genome polyprotein [Contains: Capsid protein C (Core|
           protein); Envelope protein M (Matrix protein); Major
           envelope protein E; Nonstructural protein 1 (NS1);
           Nonstructural protein 2A (NS2A); Flavivirin protease
           NS2B regulatory subunit;
          Length = 3433

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
 Frame = +2

Query: 29  RLCQKHPVIRPTVPMAHVLAAAEP-----LTLLKRPTPQNDGFGDDNGSTEEKALKARRR 193
           RL   +P +  +   A VL   EP       ++ R   Q +     +GS+  KA  A  +
Sbjct: 644 RLVTVNPFVSVSTANAKVLIELEPPFGDSYIVVGRGEQQINHHWHKSGSSIGKAFTATLK 703

Query: 194 ESDPAAALAAARHEFGEHGGVNMSI 268
            +   AAL     +FG  GGV  S+
Sbjct: 704 GAQRLAALGDTAWDFGSVGGVFTSV 728

>VGP_EBORE (Q66799) Structural glycoprotein precursor (Virion spike|
           glycoprotein) [Contains: GP1; GP2]
          Length = 677

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
 Frame = +2

Query: 92  AEPLTLLKRPTPQNDGFGDDNGSTEEKALKARRRESDPAAALAAARH-EFGEHGGVNMSI 268
           A P+T    P+P      D+N  +E+    A   +S P+A+     H E     G N S 
Sbjct: 379 ANPMTTTIAPSPTMTSEVDNNVPSEQPNNTASIEDSPPSASNETIYHSEMDPIQGSNNSA 438

Query: 269 EASATFTVMEPDT 307
           ++  T T   P T
Sbjct: 439 QSPQTKTTPAPTT 451

>OPRJ_PSEAE (Q51397) Outer membrane protein oprJ precursor|
          Length = 479

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +2

Query: 164 EEKALKARRRESDPAAALAAARHEFG 241
           EEKAL+A    S+ A  LA AR+E G
Sbjct: 397 EEKALRALANSSNEALKLAKARYESG 422

>NCPR_SALTR (P19618) NADPH--cytochrome P450 reductase (EC 1.6.2.4) (CPR)|
           (P450R) (Fragments)
          Length = 601

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
 Frame = +2

Query: 137 GFGDDNGSTEEKALKARRRESDPAAALAAARHEFGEHGGVNMSIEASAT--FTVMEPD-- 304
           G GDD+G+ EE  +   R +  PA           EH GV  S E S+   + + E +  
Sbjct: 149 GMGDDDGNLEEDFV-TWREQFWPAMC---------EHFGVEASGEDSSVRQYELKEHNDI 198

Query: 305 TMRRLFTGELG 337
            M +++TGELG
Sbjct: 199 NMNKVYTGELG 209

>ODPA_RAT (P26284) Pyruvate dehydrogenase E1 component alpha subunit, somatic|
           form, mitochondrial precursor (EC 1.2.4.1) (PDHE1-A type
           I)
          Length = 390

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -3

Query: 265 GHVHAAVLAELVTRRGQCRRRVG 197
           GH   AVLAEL  RRG C +  G
Sbjct: 128 GHAVRAVLAELTGRRGGCAKGKG 150


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,859,486
Number of Sequences: 219361
Number of extensions: 498138
Number of successful extensions: 2073
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2067
length of database: 80,573,946
effective HSP length: 93
effective length of database: 60,173,373
effective search space used: 1444160952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)