ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bast75h03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_197365.1| Oryza sativa (japonica cultivar-group) putative gamma-lyase (OSJNBa0076F20.6), mRNA Length = 1656 Score = 248 bits (125), Expect = 1e-62 Identities = 164/177 (92%) Strand = Plus / Plus Query: 178 caaggcgcgccgccgggagtccgacccggcggcggcactggccgcggcgcgtcacgagtt 237 ||||||||| ||||||||| |||||||||||||||| |||||||||||||| |||||||| Sbjct: 111 caaggcgcggcgccgggaggccgacccggcggcggcgctggccgcggcgcgccacgagtt 170 Query: 238 cggcgagcacggcggcgtgaacatgtccatcgaggcctcggccacgttcaccgtgatgga 297 ||||||||||||||| |||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 171 cggcgagcacggcggggtgaacatgtccatcgaggcgtcggcgacgttcacggtgatgga 230 Query: 298 gccggacaccatgcgccggctcttcacgggggagctgggcccggagcgcggtgacct 354 |||||||||||||||||| |||||| | |||||||| |||||||||||||| ||||| Sbjct: 231 gccggacaccatgcgccgcctcttctccggggagctcggcccggagcgcggcgacct 287
>gb|AC025296.10| Oryza sativa chromosome 10 BAC OSJNBa0076F20 genomic sequence, complete sequence Length = 165394 Score = 248 bits (125), Expect = 1e-62 Identities = 164/177 (92%) Strand = Plus / Minus Query: 178 caaggcgcgccgccgggagtccgacccggcggcggcactggccgcggcgcgtcacgagtt 237 ||||||||| ||||||||| |||||||||||||||| |||||||||||||| |||||||| Sbjct: 113153 caaggcgcggcgccgggaggccgacccggcggcggcgctggccgcggcgcgccacgagtt 113094 Query: 238 cggcgagcacggcggcgtgaacatgtccatcgaggcctcggccacgttcaccgtgatgga 297 ||||||||||||||| |||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 113093 cggcgagcacggcggggtgaacatgtccatcgaggcgtcggcgacgttcacggtgatgga 113034 Query: 298 gccggacaccatgcgccggctcttcacgggggagctgggcccggagcgcggtgacct 354 |||||||||||||||||| |||||| | |||||||| |||||||||||||| ||||| Sbjct: 113033 gccggacaccatgcgccgcctcttctccggggagctcggcccggagcgcggcgacct 112977
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 248 bits (125), Expect = 1e-62 Identities = 164/177 (92%) Strand = Plus / Minus Query: 178 caaggcgcgccgccgggagtccgacccggcggcggcactggccgcggcgcgtcacgagtt 237 ||||||||| ||||||||| |||||||||||||||| |||||||||||||| |||||||| Sbjct: 19485287 caaggcgcggcgccgggaggccgacccggcggcggcgctggccgcggcgcgccacgagtt 19485228 Query: 238 cggcgagcacggcggcgtgaacatgtccatcgaggcctcggccacgttcaccgtgatgga 297 ||||||||||||||| |||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 19485227 cggcgagcacggcggggtgaacatgtccatcgaggcgtcggcgacgttcacggtgatgga 19485168 Query: 298 gccggacaccatgcgccggctcttcacgggggagctgggcccggagcgcggtgacct 354 |||||||||||||||||| |||||| | |||||||| |||||||||||||| ||||| Sbjct: 19485167 gccggacaccatgcgccgcctcttctccggggagctcggcccggagcgcggcgacct 19485111
>dbj|AK105942.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-C01, full insert sequence Length = 1645 Score = 248 bits (125), Expect = 1e-62 Identities = 164/177 (92%) Strand = Plus / Plus Query: 178 caaggcgcgccgccgggagtccgacccggcggcggcactggccgcggcgcgtcacgagtt 237 ||||||||| ||||||||| |||||||||||||||| |||||||||||||| |||||||| Sbjct: 158 caaggcgcggcgccgggaggccgacccggcggcggcgctggccgcggcgcgccacgagtt 217 Query: 238 cggcgagcacggcggcgtgaacatgtccatcgaggcctcggccacgttcaccgtgatgga 297 ||||||||||||||| |||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 218 cggcgagcacggcggggtgaacatgtccatcgaggcgtcggcgacgttcacggtgatgga 277 Query: 298 gccggacaccatgcgccggctcttcacgggggagctgggcccggagcgcggtgacct 354 |||||||||||||||||| |||||| | |||||||| |||||||||||||| ||||| Sbjct: 278 gccggacaccatgcgccgcctcttctccggggagctcggcccggagcgcggcgacct 334
>dbj|AK100465.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023092C09, full insert sequence Length = 1704 Score = 248 bits (125), Expect = 1e-62 Identities = 164/177 (92%) Strand = Plus / Plus Query: 178 caaggcgcgccgccgggagtccgacccggcggcggcactggccgcggcgcgtcacgagtt 237 ||||||||| ||||||||| |||||||||||||||| |||||||||||||| |||||||| Sbjct: 160 caaggcgcggcgccgggaggccgacccggcggcggcgctggccgcggcgcgccacgagtt 219 Query: 238 cggcgagcacggcggcgtgaacatgtccatcgaggcctcggccacgttcaccgtgatgga 297 ||||||||||||||| |||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 220 cggcgagcacggcggggtgaacatgtccatcgaggcgtcggcgacgttcacggtgatgga 279 Query: 298 gccggacaccatgcgccggctcttcacgggggagctgggcccggagcgcggtgacct 354 |||||||||||||||||| |||||| | |||||||| |||||||||||||| ||||| Sbjct: 280 gccggacaccatgcgccgcctcttctccggggagctcggcccggagcgcggcgacct 336
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 248 bits (125), Expect = 1e-62 Identities = 164/177 (92%) Strand = Plus / Minus Query: 178 caaggcgcgccgccgggagtccgacccggcggcggcactggccgcggcgcgtcacgagtt 237 ||||||||| ||||||||| |||||||||||||||| |||||||||||||| |||||||| Sbjct: 19496563 caaggcgcggcgccgggaggccgacccggcggcggcgctggccgcggcgcgccacgagtt 19496504 Query: 238 cggcgagcacggcggcgtgaacatgtccatcgaggcctcggccacgttcaccgtgatgga 297 ||||||||||||||| |||||||||||||||||||| ||||| |||||||| |||||||| Sbjct: 19496503 cggcgagcacggcggggtgaacatgtccatcgaggcgtcggcgacgttcacggtgatgga 19496444 Query: 298 gccggacaccatgcgccggctcttcacgggggagctgggcccggagcgcggtgacct 354 |||||||||||||||||| |||||| | |||||||| |||||||||||||| ||||| Sbjct: 19496443 gccggacaccatgcgccgcctcttctccggggagctcggcccggagcgcggcgacct 19496387
>ref|NM_105141.2| Arabidopsis thaliana catalytic AT1G64660 mRNA, complete cds Length = 1628 Score = 67.9 bits (34), Expect = 2e-08 Identities = 67/78 (85%) Strand = Plus / Plus Query: 233 gagttcggcgagcacggcggcgtgaacatgtccatcgaggcctcggccacgttcaccgtg 292 ||||| || |||||||| || || |||||||||||||| ||||| ||||| |||||||| Sbjct: 216 gagtttggggagcacgggggagtaaacatgtccatcgaagcctccgccaccttcaccgtc 275 Query: 293 atggagccggacaccatg 310 ||||| ||||| |||||| Sbjct: 276 atggaaccggataccatg 293
>gb|AF428413.1|AF428413 Arabidopsis thaliana At1g64660/F1N19_22 mRNA, complete cds Length = 1574 Score = 67.9 bits (34), Expect = 2e-08 Identities = 67/78 (85%) Strand = Plus / Plus Query: 233 gagttcggcgagcacggcggcgtgaacatgtccatcgaggcctcggccacgttcaccgtg 292 ||||| || |||||||| || || |||||||||||||| ||||| ||||| |||||||| Sbjct: 213 gagtttggggagcacgggggagtaaacatgtccatcgaagcctccgccaccttcaccgtc 272 Query: 293 atggagccggacaccatg 310 ||||| ||||| |||||| Sbjct: 273 atggaaccggataccatg 290
>gb|AY054546.1| Arabidopsis thaliana similar to O-succinylhomoserine sulfhydrylase (At1g64660; F1N19.23) mRNA, complete cds Length = 1576 Score = 67.9 bits (34), Expect = 2e-08 Identities = 67/78 (85%) Strand = Plus / Plus Query: 233 gagttcggcgagcacggcggcgtgaacatgtccatcgaggcctcggccacgttcaccgtg 292 ||||| || |||||||| || || |||||||||||||| ||||| ||||| |||||||| Sbjct: 213 gagtttggggagcacgggggagtaaacatgtccatcgaagcctccgccaccttcaccgtc 272 Query: 293 atggagccggacaccatg 310 ||||| ||||| |||||| Sbjct: 273 atggaaccggataccatg 290
>gb|BT006588.1| Arabidopsis thaliana At1g64660 mRNA, complete cds Length = 1326 Score = 67.9 bits (34), Expect = 2e-08 Identities = 67/78 (85%) Strand = Plus / Plus Query: 233 gagttcggcgagcacggcggcgtgaacatgtccatcgaggcctcggccacgttcaccgtg 292 ||||| || |||||||| || || |||||||||||||| ||||| ||||| |||||||| Sbjct: 157 gagtttggggagcacgggggagtaaacatgtccatcgaagcctccgccaccttcaccgtc 216 Query: 293 atggagccggacaccatg 310 ||||| ||||| |||||| Sbjct: 217 atggaaccggataccatg 234
>emb|BX813384.1|CNS0AEBJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB14ZC05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1519 Score = 67.9 bits (34), Expect = 2e-08 Identities = 67/78 (85%) Strand = Plus / Plus Query: 233 gagttcggcgagcacggcggcgtgaacatgtccatcgaggcctcggccacgttcaccgtg 292 ||||| || |||||||| || || |||||||||||||| ||||| ||||| |||||||| Sbjct: 191 gagtttggggagcacgggggagtaaacatgtccatcgaagcctccgccaccttcaccgtc 250 Query: 293 atggagccggacaccatg 310 ||||| ||||| |||||| Sbjct: 251 atggaaccggataccatg 268
>emb|BX814513.1|CNS0AC0O Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB78ZB03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1569 Score = 67.9 bits (34), Expect = 2e-08 Identities = 67/78 (85%) Strand = Plus / Plus Query: 233 gagttcggcgagcacggcggcgtgaacatgtccatcgaggcctcggccacgttcaccgtg 292 ||||| || |||||||| || || |||||||||||||| ||||| ||||| |||||||| Sbjct: 198 gagtttggggagcacgggggagtaaacatgtccatcgaagcctccgccaccttcaccgtc 257 Query: 293 atggagccggacaccatg 310 ||||| ||||| |||||| Sbjct: 258 atggaaccggataccatg 275
>emb|BX813451.1|CNS0AC3J Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB18ZB12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1482 Score = 67.9 bits (34), Expect = 2e-08 Identities = 67/78 (85%) Strand = Plus / Plus Query: 233 gagttcggcgagcacggcggcgtgaacatgtccatcgaggcctcggccacgttcaccgtg 292 ||||| || |||||||| || || |||||||||||||| ||||| ||||| |||||||| Sbjct: 183 gagtttggggagcacgggggagtaaacatgtccatcgaagcctccgccaccttcaccgtc 242 Query: 293 atggagccggacaccatg 310 ||||| ||||| |||||| Sbjct: 243 atggaaccggataccatg 260
>emb|BX814981.1|CNS0ABGH Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS21ZF04 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1593 Score = 67.9 bits (34), Expect = 2e-08 Identities = 67/78 (85%) Strand = Plus / Plus Query: 233 gagttcggcgagcacggcggcgtgaacatgtccatcgaggcctcggccacgttcaccgtg 292 ||||| || |||||||| || || |||||||||||||| ||||| ||||| |||||||| Sbjct: 198 gagtttggggagcacgggggagtaaacatgtccatcgaagcctccgccaccttcaccgtc 257 Query: 293 atggagccggacaccatg 310 ||||| ||||| |||||| Sbjct: 258 atggaaccggataccatg 275
>gb|AC009519.4|AC009519 Genomic sequence for Arabidopsis thaliana BAC F1N19 from chromosome I, complete sequence Length = 113172 Score = 67.9 bits (34), Expect = 2e-08 Identities = 67/78 (85%) Strand = Plus / Plus Query: 233 gagttcggcgagcacggcggcgtgaacatgtccatcgaggcctcggccacgttcaccgtg 292 ||||| || |||||||| || || |||||||||||||| ||||| ||||| |||||||| Sbjct: 97421 gagtttggggagcacgggggagtaaacatgtccatcgaagcctccgccaccttcaccgtc 97480 Query: 293 atggagccggacaccatg 310 ||||| ||||| |||||| Sbjct: 97481 atggaaccggataccatg 97498
>ref|XM_477323.1| Oryza sativa (japonica cultivar-group), mRNA Length = 333 Score = 48.1 bits (24), Expect = 0.019 Identities = 24/24 (100%) Strand = Plus / Plus Query: 204 cggcggcggcactggccgcggcgc 227 |||||||||||||||||||||||| Sbjct: 53 cggcggcggcactggccgcggcgc 76
>ref|XM_539423.2| PREDICTED: Canis familiaris similar to calcitonin receptor (LOC482306), mRNA Length = 1662 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 204 cggcggcggcactggccgcgg 224 ||||||||||||||||||||| Sbjct: 1528 cggcggcggcactggccgcgg 1508
>emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete genome; segment 28/29 Length = 303550 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 gcccacgtcctcgccgccgcg 94 ||||||||||||||||||||| Sbjct: 135017 gcccacgtcctcgccgccgcg 135037
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 256 gaacatgtccatcgaggcctcggcc 280 ||||||||||||||||||| ||||| Sbjct: 1703734 gaacatgtccatcgaggccgcggcc 1703710 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 cgtcctcgccgccgcggagc 98 |||||||||||||||||||| Sbjct: 3593532 cgtcctcgccgccgcggagc 3593513
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 198 ccgacccggcggcggcactggccgc 222 ||||||| ||||||||||||||||| Sbjct: 1024108 ccgaccccgcggcggcactggccgc 1024132
>dbj|AB070956.1| Streptomyces avermitilis peptide-7 biosynthetic gene cluster Length = 54101 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 198 ccgacccggcggcggcactggccgc 222 ||||||| ||||||||||||||||| Sbjct: 35940 ccgaccccgcggcggcactggccgc 35964
>ref|XM_481010.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3126 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 tcggcgagcacggcggcgtg 256 |||||||||||||||||||| Sbjct: 974 tcggcgagcacggcggcgtg 993
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 cggcgagcacggcggcgtga 257 |||||||||||||||||||| Sbjct: 3253385 cggcgagcacggcggcgtga 3253404
>gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 6, complete sequence Length = 1438950 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 ccggcggcggcactggccgc 222 |||||||||||||||||||| Sbjct: 279412 ccggcggcggcactggccgc 279393
>gb|AC145809.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0023E20, complete sequence Length = 130827 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 cctcaagcgcccgacgccgc 128 |||||||||||||||||||| Sbjct: 32761 cctcaagcgcccgacgccgc 32780
>gb|AC145808.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0057F07 map near 50283S, complete sequence Length = 139827 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 tcggcgacgacaacggcagc 160 |||||||||||||||||||| Sbjct: 38541 tcggcgacgacaacggcagc 38522
>gb|BC047433.1| Mus musculus bromo adjacent homology domain containing 1, mRNA (cDNA clone IMAGE:4954146), partial cds Length = 3213 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 gcccacgtcctcgccgccgc 93 |||||||||||||||||||| Sbjct: 612 gcccacgtcctcgccgccgc 631
>gb|AY265146.1| Viburnum rhytidophyllum internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence Length = 608 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 gcactggccgcggcgcgtca 231 |||||||||||||||||||| Sbjct: 51 gcactggccgcggcgcgtca 70
>ref|XM_130491.6| PREDICTED: Mus musculus bromo adjacent homology domain containing 1, transcript variant 1 (Bahd1), mRNA Length = 4361 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 gcccacgtcctcgccgccgc 93 |||||||||||||||||||| Sbjct: 1790 gcccacgtcctcgccgccgc 1809
>ref|XM_917499.2| PREDICTED: Mus musculus bromo adjacent homology domain containing 1, transcript variant 3 (Bahd1), mRNA Length = 4362 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 gcccacgtcctcgccgccgc 93 |||||||||||||||||||| Sbjct: 1790 gcccacgtcctcgccgccgc 1809
>gb|BC023648.2| Homo sapiens golgi autoantigen, golgin subfamily a, 4, mRNA (cDNA clone IMAGE:3959585), partial cds Length = 1633 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 cggcgacgacaacggcagca 161 |||||||||||||||||||| Sbjct: 29 cggcgacgacaacggcagca 10
>gb|BC022164.2| Homo sapiens hypothetical protein FLJ31715, mRNA (cDNA clone IMAGE:3831619), with apparent retained intron Length = 2404 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 cggcgacgacaacggcagca 161 |||||||||||||||||||| Sbjct: 878 cggcgacgacaacggcagca 897
>gb|BC050444.1| Homo sapiens golgi autoantigen, golgin subfamily a, 4, mRNA (cDNA clone IMAGE:6500360), complete cds Length = 1483 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 cggcgacgacaacggcagca 161 |||||||||||||||||||| Sbjct: 52 cggcgacgacaacggcagca 33
>gb|AY382158.1| Amycolatopsis methanolica DAHP-synthase (aroG) gene, complete cds Length = 4430 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 204 cggcggcggcactggccgcggcgc 227 ||||||||| |||||||||||||| Sbjct: 2452 cggcggcggaactggccgcggcgc 2429
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 ctggccgcggcgcgtcacga 234 |||||||||||||||||||| Sbjct: 1511801 ctggccgcggcgcgtcacga 1511820
>gb|BC045543.1| Homo sapiens golgi autoantigen, golgin subfamily a, 4, mRNA (cDNA clone IMAGE:4825929), complete cds Length = 4184 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 cggcgacgacaacggcagca 161 |||||||||||||||||||| Sbjct: 108 cggcgacgacaacggcagca 89
>gb|AC097359.2| Homo sapiens chromosome 3 clone RP11-259K5, complete sequence Length = 187127 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 cggcgacgacaacggcagca 161 |||||||||||||||||||| Sbjct: 62331 cggcgacgacaacggcagca 62312
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 tcgccgccgcggagcccctc 103 |||||||||||||||||||| Sbjct: 2709240 tcgccgccgcggagcccctc 2709221
>dbj|AK056277.1| Homo sapiens cDNA FLJ31715 fis, clone NT2RI2006553 Length = 2383 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 cggcgacgacaacggcagca 161 |||||||||||||||||||| Sbjct: 897 cggcgacgacaacggcagca 916
>dbj|AK152597.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830080L10 product:hypothetical Bromo adjacent region/Proline-rich region profile/Arginine-rich region profile containing protein, full insert sequence Length = 4357 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 gcccacgtcctcgccgccgc 93 |||||||||||||||||||| Sbjct: 1802 gcccacgtcctcgccgccgc 1821
>gb|AC083751.6| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0042K08, from chromosome 2, complete sequence Length = 164628 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 cctcaagcgcccgacgccgc 128 |||||||||||||||||||| Sbjct: 108894 cctcaagcgcccgacgccgc 108913
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gcggcggcactggccgcggc 225 |||||||||||||||||||| Sbjct: 1166657 gcggcggcactggccgcggc 1166676
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 gcgcccgacgccgcagaacg 134 |||||||||||||||||||| Sbjct: 1984206 gcgcccgacgccgcagaacg 1984225
>gb|AE006470.1| Chlorobium tepidum TLS, complete genome Length = 2154946 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 acgacggcttcggcgacgac 151 |||||||||||||||||||| Sbjct: 1345234 acgacggcttcggcgacgac 1345215
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 tcggcgacgacaacggcagc 160 |||||||||||||||||||| Sbjct: 14207753 tcggcgacgacaacggcagc 14207772 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 cctcaagcgcccgacgccgc 128 |||||||||||||||||||| Sbjct: 7330408 cctcaagcgcccgacgccgc 7330389
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 tcggcgagcacggcggcgtg 256 |||||||||||||||||||| Sbjct: 9220794 tcggcgagcacggcggcgtg 9220775
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 4.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 82 cctcgccgccgcggagcccctcaccctcctca 113 |||||| | |||||||||| |||||||||||| Sbjct: 16549881 cctcgcgggcgcggagcccgtcaccctcctca 16549850
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 gcagaacgacggcttcggcg 146 |||||||||||||||||||| Sbjct: 4721384 gcagaacgacggcttcggcg 4721365
>ref|XM_347035.2| PREDICTED: Rattus norvegicus similar to mKIAA0945 protein (LOC362194), mRNA Length = 3900 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 gcccacgtcctcgccgccgc 93 |||||||||||||||||||| Sbjct: 3296 gcccacgtcctcgccgccgc 3315
>dbj|AP005161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0036E18 Length = 141148 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 tcggcgagcacggcggcgtg 256 |||||||||||||||||||| Sbjct: 32007 tcggcgagcacggcggcgtg 31988
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 cgagttcggcgagcacggcg 251 |||||||||||||||||||| Sbjct: 4297870 cgagttcggcgagcacggcg 4297889
>dbj|AP005316.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0527E02 Length = 176826 Score = 40.1 bits (20), Expect = 4.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 82 cctcgccgccgcggagcccctcaccctcctca 113 |||||| | |||||||||| |||||||||||| Sbjct: 123296 cctcgcgggcgcggagcccgtcaccctcctca 123265
>dbj|AK129243.1| Mus musculus mRNA for mKIAA0945 protein Length = 4577 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 gcccacgtcctcgccgccgc 93 |||||||||||||||||||| Sbjct: 2021 gcccacgtcctcgccgccgc 2040
>dbj|AK120066.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002C14, full insert sequence Length = 3160 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 tcggcgagcacggcggcgtg 256 |||||||||||||||||||| Sbjct: 769 tcggcgagcacggcggcgtg 788
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 137 ggcttcggcgacgacaacggcagc 160 ||||||||| |||||||||||||| Sbjct: 3355237 ggcttcggcaacgacaacggcagc 3355214 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 110 ctcaagcgcccgacgccgcagaac 133 ||||||||| |||||||||||||| Sbjct: 62316 ctcaagcgcgcgacgccgcagaac 62339
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 tcggcgagcacggcggcgtg 256 |||||||||||||||||||| Sbjct: 531009 tcggcgagcacggcggcgtg 531028
>ref|NM_002078.3| Homo sapiens golgi autoantigen, golgin subfamily a, 4 (GOLGA4), mRNA Length = 7717 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 cggcgacgacaacggcagca 161 |||||||||||||||||||| Sbjct: 52 cggcgacgacaacggcagca 33
>dbj|AP006190.1| Homo sapiens genomic DNA, chromosome 3, clone:RP11-145L6, complete sequence Length = 176082 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 cggcgacgacaacggcagca 161 |||||||||||||||||||| Sbjct: 31761 cggcgacgacaacggcagca 31742
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 tcggcgacgacaacggcagc 160 |||||||||||||||||||| Sbjct: 14289755 tcggcgacgacaacggcagc 14289774 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 cctcaagcgcccgacgccgc 128 |||||||||||||||||||| Sbjct: 7400494 cctcaagcgcccgacgccgc 7400475
>gb|BC100358.1| Mus musculus bromo adjacent homology domain containing 1, transcript variant 1, mRNA (cDNA clone MGC:117747 IMAGE:30848279), complete cds Length = 4614 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 gcccacgtcctcgccgccgc 93 |||||||||||||||||||| Sbjct: 2025 gcccacgtcctcgccgccgc 2044
>dbj|AB209693.1| Homo sapiens mRNA for golgi autoantigen, golgin subfamily a, 4 variant protein Length = 7649 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 cggcgacgacaacggcagca 161 |||||||||||||||||||| Sbjct: 23 cggcgacgacaacggcagca 4
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome Length = 2256640 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 203 ccggcggcggcactggccgcggcg 226 ||||||||||||| |||||||||| Sbjct: 308050 ccggcggcggcacgggccgcggcg 308073
>emb|AL845164.5| Mouse DNA sequence from clone RP23-286G12 on chromosome 2, complete sequence Length = 115921 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 gcccacgtcctcgccgccgc 93 |||||||||||||||||||| Sbjct: 10701 gcccacgtcctcgccgccgc 10720 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,469,013 Number of Sequences: 3902068 Number of extensions: 2469013 Number of successful extensions: 62616 Number of sequences better than 10.0: 63 Number of HSP's better than 10.0 without gapping: 65 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60386 Number of HSP's gapped (non-prelim): 2230 length of query: 354 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 332 effective length of database: 17,147,199,772 effective search space: 5692870324304 effective search space used: 5692870324304 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
