ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast75g12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_473091.1| Oryza sativa (japonica cultivar-group), predic... 305 3e-80
2emb|AL731638.3|OSJN00283 Oryza sativa genomic DNA, chromosome 4,... 305 3e-80
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 305 3e-80
4dbj|AK121493.1| Oryza sativa (japonica cultivar-group) cDNA clon... 305 3e-80
5dbj|AK063930.1| Oryza sativa (japonica cultivar-group) cDNA clon... 305 3e-80
6dbj|AK063370.1| Oryza sativa (japonica cultivar-group) cDNA clon... 305 3e-80
7dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.046
8gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 46 0.046
9emb|AL713909.5|CNS07YQ9 Oryza sativa chromosome 12, . Partial se... 46 0.046
10emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 44 0.18
11ref|XM_308179.2| Anopheles gambiae str. PEST ENSANGP00000020725 ... 42 0.72
12ref|XM_464868.1| Oryza sativa (japonica cultivar-group), mRNA 40 2.8
13gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 40 2.8
14gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 40 2.8
15ref|NM_000498.2| Homo sapiens cytochrome P450, family 11, subfam... 40 2.8
16emb|X54741.1|HSP450AL Human CYPXIB2 gene for aldosterone synthase 40 2.8
17emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 2.8
18emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete ... 40 2.8
19emb|BX640425.1| Bordetella parapertussis strain 12822, complete ... 40 2.8
20dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.8
21dbj|AK189961.1| Mus musculus cDNA, clone:Y1G0101F03, strand:unsp... 40 2.8
22dbj|AP005510.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.8
23dbj|AP004875.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.8

>ref|XM_473091.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1680

 Score =  305 bits (154), Expect = 3e-80
 Identities = 190/202 (94%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtaccgcgtgcccaagtccctccgcgagggcgacgagcgcgcctacatgccgcaggtgg 60
           ||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct: 347 tgtaccgcgtgcccaagtcgctccgcgacggcgacgagcgcgcgtacatgccgcaggtgg 406

                                                                       
Query: 61  tgtccatcggcccgctccacgccggcaagcggcggctgcgtgagatggagcggcacaagt 120
           ||||||||||||||||||||  ||||  |||||||||||| |||||||||||||||||||
Sbjct: 407 tgtccatcggcccgctccaccgcggccggcggcggctgcgggagatggagcggcacaagt 466

                                                                       
Query: 121 ggcgcgcgctgcaccacgtgctgaagcgcacgggccacgacgtcaccgcctacctcgacg 180
           ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 467 ggcgcgcgctgcaccacgtcctgaagcgcacggggcacgacgtcaccgcctacctcgacg 526

                                 
Query: 181 ccctgcggcccatggaggagcg 202
           | |||||||| |||||||||||
Sbjct: 527 cgctgcggccgatggaggagcg 548



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>emb|AL731638.3|OSJN00283 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0116K07,
             complete sequence
          Length = 130779

 Score =  305 bits (154), Expect = 3e-80
 Identities = 190/202 (94%)
 Strand = Plus / Minus

                                                                         
Query: 1     tgtaccgcgtgcccaagtccctccgcgagggcgacgagcgcgcctacatgccgcaggtgg 60
             ||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct: 90950 tgtaccgcgtgcccaagtcgctccgcgacggcgacgagcgcgcgtacatgccgcaggtgg 90891

                                                                         
Query: 61    tgtccatcggcccgctccacgccggcaagcggcggctgcgtgagatggagcggcacaagt 120
             ||||||||||||||||||||  ||||  |||||||||||| |||||||||||||||||||
Sbjct: 90890 tgtccatcggcccgctccaccgcggccggcggcggctgcgggagatggagcggcacaagt 90831

                                                                         
Query: 121   ggcgcgcgctgcaccacgtgctgaagcgcacgggccacgacgtcaccgcctacctcgacg 180
             ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 90830 ggcgcgcgctgcaccacgtcctgaagcgcacggggcacgacgtcaccgcctacctcgacg 90771

                                   
Query: 181   ccctgcggcccatggaggagcg 202
             | |||||||| |||||||||||
Sbjct: 90770 cgctgcggccgatggaggagcg 90749



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  305 bits (154), Expect = 3e-80
 Identities = 190/202 (94%)
 Strand = Plus / Minus

                                                                            
Query: 1        tgtaccgcgtgcccaagtccctccgcgagggcgacgagcgcgcctacatgccgcaggtgg 60
                ||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct: 25209283 tgtaccgcgtgcccaagtcgctccgcgacggcgacgagcgcgcgtacatgccgcaggtgg 25209224

                                                                            
Query: 61       tgtccatcggcccgctccacgccggcaagcggcggctgcgtgagatggagcggcacaagt 120
                ||||||||||||||||||||  ||||  |||||||||||| |||||||||||||||||||
Sbjct: 25209223 tgtccatcggcccgctccaccgcggccggcggcggctgcgggagatggagcggcacaagt 25209164

                                                                            
Query: 121      ggcgcgcgctgcaccacgtgctgaagcgcacgggccacgacgtcaccgcctacctcgacg 180
                ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 25209163 ggcgcgcgctgcaccacgtcctgaagcgcacggggcacgacgtcaccgcctacctcgacg 25209104

                                      
Query: 181      ccctgcggcccatggaggagcg 202
                | |||||||| |||||||||||
Sbjct: 25209103 cgctgcggccgatggaggagcg 25209082



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>dbj|AK121493.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033000K17, full
            insert sequence
          Length = 1865

 Score =  305 bits (154), Expect = 3e-80
 Identities = 190/202 (94%)
 Strand = Plus / Minus

                                                                        
Query: 1    tgtaccgcgtgcccaagtccctccgcgagggcgacgagcgcgcctacatgccgcaggtgg 60
            ||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct: 1237 tgtaccgcgtgcccaagtcgctccgcgacggcgacgagcgcgcgtacatgccgcaggtgg 1178

                                                                        
Query: 61   tgtccatcggcccgctccacgccggcaagcggcggctgcgtgagatggagcggcacaagt 120
            ||||||||||||||||||||  ||||  |||||||||||| |||||||||||||||||||
Sbjct: 1177 tgtccatcggcccgctccaccgcggccggcggcggctgcgggagatggagcggcacaagt 1118

                                                                        
Query: 121  ggcgcgcgctgcaccacgtgctgaagcgcacgggccacgacgtcaccgcctacctcgacg 180
            ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 1117 ggcgcgcgctgcaccacgtcctgaagcgcacggggcacgacgtcaccgcctacctcgacg 1058

                                  
Query: 181  ccctgcggcccatggaggagcg 202
            | |||||||| |||||||||||
Sbjct: 1057 cgctgcggccgatggaggagcg 1036



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>dbj|AK063930.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-D02, full
           insert sequence
          Length = 2109

 Score =  305 bits (154), Expect = 3e-80
 Identities = 190/202 (94%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtaccgcgtgcccaagtccctccgcgagggcgacgagcgcgcctacatgccgcaggtgg 60
           ||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct: 491 tgtaccgcgtgcccaagtcgctccgcgacggcgacgagcgcgcgtacatgccgcaggtgg 550

                                                                       
Query: 61  tgtccatcggcccgctccacgccggcaagcggcggctgcgtgagatggagcggcacaagt 120
           ||||||||||||||||||||  ||||  |||||||||||| |||||||||||||||||||
Sbjct: 551 tgtccatcggcccgctccaccgcggccggcggcggctgcgggagatggagcggcacaagt 610

                                                                       
Query: 121 ggcgcgcgctgcaccacgtgctgaagcgcacgggccacgacgtcaccgcctacctcgacg 180
           ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 611 ggcgcgcgctgcaccacgtcctgaagcgcacggggcacgacgtcaccgcctacctcgacg 670

                                 
Query: 181 ccctgcggcccatggaggagcg 202
           | |||||||| |||||||||||
Sbjct: 671 cgctgcggccgatggaggagcg 692



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>dbj|AK063370.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-114-E02, full
            insert sequence
          Length = 2062

 Score =  305 bits (154), Expect = 3e-80
 Identities = 190/202 (94%)
 Strand = Plus / Minus

                                                                        
Query: 1    tgtaccgcgtgcccaagtccctccgcgagggcgacgagcgcgcctacatgccgcaggtgg 60
            ||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct: 1441 tgtaccgcgtgcccaagtcgctccgcgacggcgacgagcgcgcgtacatgccgcaggtgg 1382

                                                                        
Query: 61   tgtccatcggcccgctccacgccggcaagcggcggctgcgtgagatggagcggcacaagt 120
            ||||||||||||||||||||  ||||  |||||||||||| |||||||||||||||||||
Sbjct: 1381 tgtccatcggcccgctccaccgcggccggcggcggctgcgggagatggagcggcacaagt 1322

                                                                        
Query: 121  ggcgcgcgctgcaccacgtgctgaagcgcacgggccacgacgtcaccgcctacctcgacg 180
            ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 1321 ggcgcgcgctgcaccacgtcctgaagcgcacggggcacgacgtcaccgcctacctcgacg 1262

                                  
Query: 181  ccctgcggcccatggaggagcg 202
            | |||||||| |||||||||||
Sbjct: 1261 cgctgcggccgatggaggagcg 1240



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 46.1 bits (23), Expect = 0.046
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 39       cgcgcctacatgccgcaggtggtgtccatcggccc 73
                |||||||||  |||||||||||||||| |||||||
Sbjct: 17723388 cgcgcctaccagccgcaggtggtgtccctcggccc 17723354



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 46.1 bits (23), Expect = 0.046
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 39       cgcgcctacatgccgcaggtggtgtccatcggccc 73
                |||||||||  |||||||||||||||| |||||||
Sbjct: 17677759 cgcgcctaccagccgcaggtggtgtccctcggccc 17677725



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>emb|AL713909.5|CNS07YQ9 Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBa0073H17
             of library OSJNBa from chromosome 12 of cultivar
             Nipponbare of ssp. japonica of Oryza sativa (rice),
             complete sequence
          Length = 113494

 Score = 46.1 bits (23), Expect = 0.046
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 39    cgcgcctacatgccgcaggtggtgtccatcggccc 73
             |||||||||  |||||||||||||||| |||||||
Sbjct: 57965 cgcgcctaccagccgcaggtggtgtccctcggccc 57999



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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 47      catgccgcaggtggtgtccatc 68
               ||||||||||||||||||||||
Sbjct: 3916661 catgccgcaggtggtgtccatc 3916682



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>ref|XM_308179.2| Anopheles gambiae str. PEST ENSANGP00000020725
           (ENSANGG00000018236), partial mRNA
          Length = 1168

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 136 acgtgctgaagcgcacgggccacga 160
           ||||||||||||||| |||||||||
Sbjct: 897 acgtgctgaagcgcatgggccacga 921



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>ref|XM_464868.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2133

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 50  gccgcaggtggtgtccatcggccc 73
           ||||||| ||||||||||||||||
Sbjct: 147 gccgcagctggtgtccatcggccc 170



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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 30      ggcgacgagcgcgcctacat 49
               ||||||||||||||||||||
Sbjct: 2375781 ggcgacgagcgcgcctacat 2375800



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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 73      cgctccacgccggcaagcgg 92
               ||||||||||||||||||||
Sbjct: 2677390 cgctccacgccggcaagcgg 2677409



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>ref|NM_000498.2| Homo sapiens cytochrome P450, family 11, subfamily B, polypeptide 2
            (CYP11B2), nuclear gene encoding mitochondrial protein,
            mRNA
          Length = 2936

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 128  gctgcaccacgtgctgaagc 147
            ||||||||||||||||||||
Sbjct: 1392 gctgcaccacgtgctgaagc 1411



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>emb|X54741.1|HSP450AL Human CYPXIB2 gene for aldosterone synthase
          Length = 2936

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 128  gctgcaccacgtgctgaagc 147
            ||||||||||||||||||||
Sbjct: 1392 gctgcaccacgtgctgaagc 1411



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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 73     cgctccacgccggcaagcgg 92
              ||||||||||||||||||||
Sbjct: 718283 cgctccacgccggcaagcgg 718264



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>emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete genome; segment 3/16
          Length = 346362

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     gcgagggcgacgagcgcgcc 44
              ||||||||||||||||||||
Sbjct: 239747 gcgagggcgacgagcgcgcc 239766



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>emb|BX640425.1| Bordetella parapertussis strain 12822, complete genome; segment 3/14
          Length = 348257

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     gcgagggcgacgagcgcgcc 44
              ||||||||||||||||||||
Sbjct: 153667 gcgagggcgacgagcgcgcc 153686



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 50      gccgcaggtggtgtccatcggccc 73
               ||||||| ||||||||||||||||
Sbjct: 8643803 gccgcagctggtgtccatcggccc 8643780



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>dbj|AK189961.1| Mus musculus cDNA, clone:Y1G0101F03, strand:unspecified
          Length = 246

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 189 cccatggaggagcgtgtgag 208
           ||||||||||||||||||||
Sbjct: 215 cccatggaggagcgtgtgag 196



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>dbj|AP005510.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0009N02
          Length = 121142

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 50     gccgcaggtggtgtccatcggccc 73
              ||||||| ||||||||||||||||
Sbjct: 113126 gccgcagctggtgtccatcggccc 113103



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>dbj|AP004875.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0463G12
          Length = 145403

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 50    gccgcaggtggtgtccatcggccc 73
             ||||||| ||||||||||||||||
Sbjct: 50850 gccgcagctggtgtccatcggccc 50827


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 954,704
Number of Sequences: 3902068
Number of extensions: 954704
Number of successful extensions: 75720
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74918
Number of HSP's gapped (non-prelim): 802
length of query: 222
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 200
effective length of database: 17,147,199,772
effective search space: 3429439954400
effective search space used: 3429439954400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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