| Clone Name | bast75g11 |
|---|---|
| Clone Library Name | barley_pub |
>PRP2_MOUSE (P05142) Proline-rich protein MP-2 precursor| Length = 261 Score = 31.6 bits (70), Expect = 1.1 Identities = 18/44 (40%), Positives = 18/44 (40%), Gaps = 4/44 (9%) Frame = +2 Query: 158 PPVGPHRRSPVGPPYWSPHRRSGL----TAGRQSGLPAVPPTAG 277 PP GP R P GPP P R T G Q P PP G Sbjct: 166 PPAGPQPRPPQGPPTTGPQPRPTQGPPPTGGPQQQPPQGPPPPG 209 Score = 30.8 bits (68), Expect = 1.8 Identities = 11/19 (57%), Positives = 12/19 (63%) Frame = +1 Query: 211 PPPVGPHRRSPVGPPSCSP 267 PPP GP R P GPP+ P Sbjct: 165 PPPAGPQPRPPQGPPTTGP 183 Score = 29.6 bits (65), Expect = 4.1 Identities = 17/40 (42%), Positives = 17/40 (42%) Frame = +2 Query: 158 PPVGPHRRSPVGPPYWSPHRRSGLTAGRQSGLPAVPPTAG 277 PP GP R P GPP AG Q P PPT G Sbjct: 152 PPAGPQPRPPQGPP---------PPAGPQPRPPQGPPTTG 182 Score = 28.1 bits (61), Expect(2) = 0.28 Identities = 10/15 (66%), Positives = 11/15 (73%) Frame = +1 Query: 211 PPPVGPHRRSPVGPP 255 PPP GP +R P GPP Sbjct: 109 PPPGGPQQRPPQGPP 123 Score = 26.9 bits (58), Expect(2) = 0.59 Identities = 10/15 (66%), Positives = 10/15 (66%) Frame = +1 Query: 211 PPPVGPHRRSPVGPP 255 PPP GP R P GPP Sbjct: 95 PPPGGPQPRPPQGPP 109 Score = 24.3 bits (51), Expect(2) = 0.28 Identities = 9/14 (64%), Positives = 9/14 (64%) Frame = +2 Query: 158 PPVGPHRRSPVGPP 199 PP GP R P GPP Sbjct: 68 PPGGPQPRPPQGPP 81 Score = 24.3 bits (51), Expect(2) = 0.59 Identities = 9/14 (64%), Positives = 9/14 (64%) Frame = +2 Query: 158 PPVGPHRRSPVGPP 199 PP GP R P GPP Sbjct: 54 PPGGPQPRPPQGPP 67
>POL_HTLV2 (P03363) Pol polyprotein [Contains: Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 982 Score = 32.7 bits (73), Expect = 0.48 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Frame = +2 Query: 134 RVGHPAALPPVGPHRRSPVGPPYWSPHRRSGLTAGRQSG-LPAVPPTAGRASLLVAG 301 ++ H LPP+ P PP W ++ GLT R G L ++ AG A L + G Sbjct: 891 QIHHSPPLPPIPEASTPPKPPPKWFYYKLPGLTNQRWKGPLQSLQEAAGAALLSIDG 947
>PMP3_MOUSE (P05143) Proline-rich protein MP-3 (Fragment)| Length = 296 Score = 30.8 bits (68), Expect = 1.8 Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 5/45 (11%) Frame = +2 Query: 158 PPVGPHRRSPVGP-----PYWSPHRRSGLTAGRQSGLPAVPPTAG 277 PP GP R P GP P+ P + T G Q P PP G Sbjct: 145 PPAGPQPRPPQGPPPPAGPHLRPTQGPPPTGGPQQRYPQSPPPPG 189 Score = 30.0 bits (66), Expect = 3.1 Identities = 18/44 (40%), Positives = 18/44 (40%), Gaps = 4/44 (9%) Frame = +2 Query: 158 PPVGPHRRSPVGPPYWSPHRRSGL----TAGRQSGLPAVPPTAG 277 PP GPH R GPP P R T G Q P PP G Sbjct: 201 PPGGPHPRPTQGPPPTGPQPRPTQGPPPTGGPQQRPPQGPPPPG 244 Score = 28.9 bits (63), Expect = 6.9 Identities = 11/19 (57%), Positives = 11/19 (57%) Frame = +1 Query: 211 PPPVGPHRRSPVGPPSCSP 267 PPP GPH R GPP P Sbjct: 200 PPPGGPHPRPTQGPPPTGP 218 Score = 28.9 bits (63), Expect = 6.9 Identities = 12/21 (57%), Positives = 12/21 (57%), Gaps = 1/21 (4%) Frame = +1 Query: 211 PPPVGPHRRSPVG-PPSCSPH 270 PPP GP R P G PP PH Sbjct: 144 PPPAGPQPRPPQGPPPPAGPH 164 Score = 28.5 bits (62), Expect = 9.1 Identities = 15/40 (37%), Positives = 17/40 (42%) Frame = +1 Query: 136 GRPSGRSTAGRASPTIAGRASLLVAPPPVGPHRRSPVGPP 255 G P R G P + PPP GP +R P GPP Sbjct: 91 GGPQPRPPQGPPPPGGPQQRPPQGPPPPGGPQQRPPQGPP 130 Score = 26.9 bits (58), Expect(2) = 0.58 Identities = 10/15 (66%), Positives = 10/15 (66%) Frame = +1 Query: 211 PPPVGPHRRSPVGPP 255 PPP GP R P GPP Sbjct: 88 PPPGGPQPRPPQGPP 102 Score = 26.9 bits (58), Expect(2) = 0.58 Identities = 10/15 (66%), Positives = 10/15 (66%) Frame = +1 Query: 211 PPPVGPHRRSPVGPP 255 PPP GP R P GPP Sbjct: 74 PPPGGPQPRPPQGPP 88 Score = 24.3 bits (51), Expect(2) = 0.58 Identities = 9/14 (64%), Positives = 9/14 (64%) Frame = +2 Query: 158 PPVGPHRRSPVGPP 199 PP GP R P GPP Sbjct: 61 PPGGPQPRPPQGPP 74 Score = 24.3 bits (51), Expect(2) = 0.58 Identities = 9/14 (64%), Positives = 9/14 (64%) Frame = +2 Query: 158 PPVGPHRRSPVGPP 199 PP GP R P GPP Sbjct: 47 PPGGPQPRPPQGPP 60
>JPH2_RABIT (Q9GKY7) Junctophilin-2 (Junctophilin type 2) (JP-2)| Length = 694 Score = 32.3 bits (72), Expect = 0.63 Identities = 21/59 (35%), Positives = 22/59 (37%) Frame = +1 Query: 82 RRRPHRSTQSLVCATCWEGRPSGRSTAGRASPTIAGRASLLVAPPPVGPHRRSPVGPPS 258 R RP S L+ W G PSG S G S P G RRSP P S Sbjct: 493 RPRPGASKDGLLGPGAWNGEPSGGS---------GGEGSRPATPAAAGAGRRSPARPAS 542
>NLTP2_ORYSA (Q42978) Nonspecific lipid-transfer protein 2 precursor (LTP 2)| Length = 118 Score = 32.0 bits (71), Expect = 0.82 Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 6/102 (5%) Frame = +2 Query: 62 LVTFPAAAVALTGRHSHWCARHVGRVGHPAALPPVGPHRRSPVGPP------YWSPHRRS 223 LV AAA+ L G H+ A G+V +A+ P + R GP S + + Sbjct: 8 LVALVAAALLLAGPHTTMAAISCGQVN--SAVSPCLSYARGGSGPSAACCSGVRSLNSAA 65 Query: 224 GLTAGRQSGLPAVPPTAGRASLLVAGRRAALQDRGRGCGLSI 349 TA R++ + AG S L AG A++ + CG++I Sbjct: 66 STTADRRTACNCLKNVAGSISGLNAGNAASIPSK---CGVTI 104
>HMX_STRPU (Q26656) Homeobox protein Hmx (SpHmx) (H6-like) (Fragment)| Length = 405 Score = 32.0 bits (71), Expect = 0.82 Identities = 30/83 (36%), Positives = 33/83 (39%), Gaps = 11/83 (13%) Frame = +2 Query: 155 LPPVGPHRRSPVGPPYWSPHRRSGLTAGRQSG---------LPAVPPTAGRASL--LVAG 301 L P HR+SP PP SP S + G G L A P GRA+L L A Sbjct: 80 LSPTDKHRKSPRSPP-MSPSSPSMSSNGYSEGPIYGSTRHPLSATVPGLGRAALDELAAH 138 Query: 302 RRAALQDRGRGCGLSILRSQPLF 370 R AAL S L P F Sbjct: 139 RAAALHIPSAALPFSHLAHNPAF 161
>ALGP_PSEAE (P15276) Transcriptional regulatory protein algP (Alginate| regulatory protein algR3) Length = 352 Score = 31.6 bits (70), Expect = 1.1 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = -3 Query: 324 RSCKAARRPATSREARPAVGGTAGRPDWRPAVRP 223 R K A +PA A+PAV A +P +PA +P Sbjct: 133 RKAKPATKPAAKAAAKPAVKTVAAKPAAKPAAKP 166
>IF2_CORDI (Q6NGN2) Translation initiation factor IF-2| Length = 953 Score = 28.5 bits (62), Expect(2) = 1.1 Identities = 14/46 (30%), Positives = 23/46 (50%) Frame = -3 Query: 351 RMESPQPRPRSCKAARRPATSREARPAVGGTAGRPDWRPAVRPDRR 214 + ES P+P + K A ++ + A G+ RP +PA +P R Sbjct: 126 KAESSAPKPAAPKPAAPKPAAQSSTTATPGSMPRPQAKPAPKPGGR 171 Score = 21.6 bits (44), Expect(2) = 1.1 Identities = 9/22 (40%), Positives = 14/22 (63%) Frame = -1 Query: 458 PKQSASFPSSSMHQCAKLVAPR 393 PK +A P+++ Q AK AP+ Sbjct: 75 PKPAAPKPAATPQQAAKPAAPK 96
>TCGAP_MOUSE (Q80YF9) TC10/CDC42 GTPase-activating protein (Sorting nexin 26)| Length = 1305 Score = 30.8 bits (68), Expect = 1.8 Identities = 25/86 (29%), Positives = 31/86 (36%), Gaps = 17/86 (19%) Frame = +1 Query: 64 GDLPGCRRRPHRSTQSLVCATCWEGRPSGRSTAGRASPTIAGRASLLVAPPP-------- 219 G P P R + SL G P G S +G P++A + PPP Sbjct: 941 GGTPPAPHSPFRRSLSLEVG----GEPVGTSGSGIHPPSLAHPGAWAPGPPPYLPRQQSD 996 Query: 220 ---------VGPHRRSPVGPPSCSPH 270 +G RRSP GP S H Sbjct: 997 GSLVRSQRPLGTSRRSPRGPSQVSAH 1022
>CXA3_HUMAN (Q9Y6H8) Gap junction alpha-3 protein (Connexin-46) (Cx46)| Length = 434 Score = 30.8 bits (68), Expect = 1.8 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 4/63 (6%) Frame = +2 Query: 158 PPVGPHRRSP---VG-PPYWSPHRRSGLTAGRQSGLPAVPPTAGRASLLVAGRRAALQDR 325 PP+ P R P +G PPY++ H + L R G P PP A +L A + R Sbjct: 252 PPLPPSSRPPAVAIGFPPYYA-HTAAPLGQARAVGYPGAPPPAADFKML-----ALTEAR 305 Query: 326 GRG 334 G+G Sbjct: 306 GKG 308
>CO1A2_RANCA (O42350) Collagen alpha-2(I) chain precursor| Length = 1355 Score = 30.4 bits (67), Expect = 2.4 Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 4/27 (14%) Frame = +2 Query: 131 GRVGHPAALPPVGPHR----RSPVGPP 199 GR GHP A+ PVGP P GPP Sbjct: 1057 GRSGHPGAMGPVGPRGPAGFTGPAGPP 1083
>C5AP_STRP3 (Q8K5Q0) C5a peptidase precursor (EC 3.4.21.-) (SCP)| Length = 1169 Score = 30.0 bits (66), Expect = 3.1 Identities = 11/43 (25%), Positives = 23/43 (53%) Frame = -3 Query: 345 ESPQPRPRSCKAARRPATSREARPAVGGTAGRPDWRPAVRPDR 217 ++P+ +P + + P EA+P G+ PD +P +P++ Sbjct: 1048 KTPETKPEQDGSGQAPDKKPEAKPEQDGSGQAPDKKPETKPEK 1090
>LETM1_MOUSE (Q9Z2I0) Leucine zipper-EF-hand containing transmembrane protein 1,| mitochondrial precursor Length = 738 Score = 30.0 bits (66), Expect = 3.1 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%) Frame = +1 Query: 124 TCWEGRPSGRSTAGRASPTIAGRASLLVAP---PPVGPHRRSPVGPPS 258 +CW RP + TA R + T A ++ P P G H SP+G S Sbjct: 70 SCWTQRPECQGTAARTTWTPASARLVVTGPQYLPVRGWHSSSPLGEDS 117
>DPOL_TUHV1 (Q9YUS3) DNA polymerase (EC 2.7.7.7)| Length = 1171 Score = 30.0 bits (66), Expect = 3.1 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Frame = +2 Query: 146 PAALPPVGPHRRSPVGPPYWSPHRR-SGLTAGRQSGLPAVPPTAGRASLLVAGRRAAL 316 PAA P H G + +P R +G+ A G+ A PP G S G RAA+ Sbjct: 663 PAAGPSGAAHAGGVPGATFRTPFRTPAGVPAAAAGGVGAGPPGGGAVSSASVGGRAAV 720
>IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2| Length = 969 Score = 30.0 bits (66), Expect = 3.1 Identities = 24/69 (34%), Positives = 28/69 (40%) Frame = +2 Query: 134 RVGHPAALPPVGPHRRSPVGPPYWSPHRRSGLTAGRQSGLPAVPPTAGRASLLVAGRRAA 313 R G P P P R +P P +P R G +AG + G P P AGR G R Sbjct: 239 RPGGPRPSPGSMPPRPNPGAMPQRTP--RPGPSAGGRPGRPGGAPGAGRPGGGGGGYRGG 296 Query: 314 LQDRGRGCG 340 G G G Sbjct: 297 GGAPGAGAG 305
>LETM1_RAT (Q5XIN6) Leucine zipper-EF-hand containing transmembrane protein 1,| mitochondrial precursor Length = 739 Score = 30.0 bits (66), Expect = 3.1 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%) Frame = +1 Query: 124 TCWEGRPSGRSTAGRASPTIAGRASLLVAP---PPVGPHRRSPVGPPS 258 +CW RP + T RA+ T A ++ P P G H SP+G S Sbjct: 70 SCWTQRPECQGTVARAAWTPASARLVVTGPQYLPVRGWHSSSPLGEDS 117
>AFSK_STRCO (P54741) Serine/threonine protein kinase afsK (EC 2.7.11.1)| Length = 799 Score = 30.0 bits (66), Expect = 3.1 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 2/27 (7%) Frame = +2 Query: 203 WSPHRRSGLTAGRQSGLPAVPP--TAG 277 W P R GL GR++G PAV P TAG Sbjct: 283 WLPERAVGLIEGRRNGRPAVKPATTAG 309
>SYN1_HUMAN (P17600) Synapsin-1 (Synapsin I) (Brain protein 4.1)| Length = 705 Score = 29.6 bits (65), Expect = 4.1 Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 5/53 (9%) Frame = +2 Query: 158 PPVGPHRRSPVGPPYWSP---HRRSGLTAGRQSGLPAVPPT--AGRASLLVAG 301 PP G S +GPP SP S +A +Q A PPT GR S VAG Sbjct: 486 PPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAG 538 Score = 28.5 bits (62), Expect = 9.1 Identities = 17/44 (38%), Positives = 21/44 (47%) Frame = +1 Query: 124 TCWEGRPSGRSTAGRASPTIAGRASLLVAPPPVGPHRRSPVGPP 255 T + RPSG AGR P +A + S V PP + GPP Sbjct: 617 TTQQPRPSGPGPAGRPKPQLAQKPSQDVPPPATA----AAGGPP 656 Score = 25.4 bits (54), Expect(2) = 4.0 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = +1 Query: 211 PPPVGPHRRSPVGPPSCSP 267 PPP G S +GPP+ SP Sbjct: 485 PPPQGQQHLSGLGPPAGSP 503 Score = 22.7 bits (47), Expect(2) = 4.0 Identities = 14/37 (37%), Positives = 16/37 (43%) Frame = +2 Query: 89 ALTGRHSHWCARHVGRVGHPAALPPVGPHRRSPVGPP 199 A GR SH G+ P ALP + P GPP Sbjct: 426 ASPGRGSH------GQTPSPGALPLGRQTSQQPAGPP 456
>RLPA_TREPA (O83958) RlpA-like protein precursor| Length = 318 Score = 29.6 bits (65), Expect = 4.1 Identities = 15/40 (37%), Positives = 19/40 (47%) Frame = +2 Query: 155 LPPVGPHRRSPVGPPYWSPHRRSGLTAGRQSGLPAVPPTA 274 +PP P +PV Y PH GR++G P VP A Sbjct: 147 VPPTAPTSSAPV--MYADPHNPPPAPVGRRAGTPGVPGVA 184
>DNB2_ADE07 (P04497) Early E2A DNA-binding protein| Length = 517 Score = 29.6 bits (65), Expect = 4.1 Identities = 19/63 (30%), Positives = 29/63 (46%) Frame = +2 Query: 101 RHSHWCARHVGRVGHPAALPPVGPHRRSPVGPPYWSPHRRSGLTAGRQSGLPAVPPTAGR 280 + H R +G HP P P + P PP + +RR G + +S + V T+ R Sbjct: 13 QREHTPERGMGSASHPPPRPDRSPSQSPPPLPPKRNTYRRVGSNSSIESQVVLVSETS-R 71 Query: 281 ASL 289 +SL Sbjct: 72 SSL 74
>C5AP_STRP6 (Q5X9R0) C5a peptidase precursor (EC 3.4.21.-) (SCP)| Length = 1184 Score = 29.6 bits (65), Expect = 4.1 Identities = 11/43 (25%), Positives = 22/43 (51%) Frame = -3 Query: 345 ESPQPRPRSCKAARRPATSREARPAVGGTAGRPDWRPAVRPDR 217 + P+ +P + + P EA+P G+ PD +P +P++ Sbjct: 1063 KKPETKPEQDGSGQAPDKKPEAKPEQDGSGQTPDKKPETKPEK 1105
>BSN_HUMAN (Q9UPA5) Bassoon protein (Zinc-finger protein 231)| Length = 3925 Score = 29.6 bits (65), Expect = 4.1 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = +2 Query: 131 GRVGHPAALPPVGPHRRSPVGPPYWSPHRRSGLTAGRQSG 250 G +G P LPP + PP +PHR SG + +Q G Sbjct: 522 GSLGEPTPLPPPTSQQ-----PPVGAPHRASGTSPLKQKG 556
>DDEF1_BOVIN (O97902) 130-kDa phosphatidylinositol 4,5-biphosphate-dependent| ARF1 GTPase-activating protein (PIP2-dependent ARF1 GAP) (ADP-ribosylation factor-directed GTPase-activating protein 1) (ARF GTPase-activating protein 1) (Development and differe Length = 1129 Score = 29.6 bits (65), Expect = 4.1 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%) Frame = +1 Query: 133 EGRPSGRSTAGRASPTIAGRASLLV--APPPVGPHRRSPVGPPSCSPH 270 +G P ST ++ T +G ++L +PPP H+R+ PPS PH Sbjct: 803 KGPPGPPSTLPLSTQTSSGSSTLSKKRSPPPPPGHKRTLSDPPSPLPH 850
>LIX1L_MOUSE (Q8BQ89) LIX1-like protein| Length = 337 Score = 29.6 bits (65), Expect = 4.1 Identities = 24/56 (42%), Positives = 27/56 (48%), Gaps = 2/56 (3%) Frame = +2 Query: 131 GRVGHP--AALPPVGPHRRSPVGPPYWSPHRRSGLTAGRQSGLPAVPPTAGRASLL 292 G G P AA PPVGP P PP +P L AG GLP P AG ++L Sbjct: 27 GVTGAPTSAATPPVGP----PPAPPPPAPPLPPLLLAG-APGLPLPPGAAGSPAVL 77
>IBP3_BOVIN (P20959) Insulin-like growth factor-binding protein 3 precursor| (IGFBP-3) (IBP-3) (IGF-binding protein 3) Length = 291 Score = 29.3 bits (64), Expect = 5.3 Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 7/67 (10%) Frame = +1 Query: 82 RRRPHRSTQSLVCATCWEGRPSGRSTAGR--ASPTIA-----GRASLLVAPPPVGPHRRS 240 R RP +L T G P+ R+ AG A P + RA APPP P Sbjct: 3 RARPALWAAALTALTLLRGPPAARAGAGTMGAGPVVRCEPCDARAVAQCAPPPPSPPCAE 62 Query: 241 PVGPPSC 261 V P C Sbjct: 63 LVREPGC 69
>ARX_MOUSE (O35085) Homeobox protein ARX (Aristaless-related homeobox)| Length = 564 Score = 29.3 bits (64), Expect = 5.3 Identities = 32/120 (26%), Positives = 44/120 (36%), Gaps = 12/120 (10%) Frame = +2 Query: 101 RHSHWCARH-VGRVGHPAALPPVGPHRRSPVGPPY-----WSPHRRS------GLTAGRQ 244 R + W R G HP LP GP + PY + PH + A Sbjct: 381 RRAKWRKREKAGAQTHPPGLPFPGPLSATHPLSPYLDASPFPPHHPALDSAWTAAAAAAA 440 Query: 245 SGLPAVPPTAGRASLLVAGRRAALQDRGRGCGLSILRSQPLFTVDSIGDLEELLISHTDA 424 + P++PP G ASL +G L G ++ R P F + G L + T A Sbjct: 441 AAFPSLPPPPGSASLPPSGAPLGL---STFLGAAVFR-HPAFISPAFGRLFSTMAPLTSA 496
>SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)| Length = 706 Score = 29.3 bits (64), Expect = 5.3 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 3/46 (6%) Frame = -3 Query: 351 RMESPQPRPRSCKAARRPATS---REARPAVGGTAGRPDWRPAVRP 223 R+ SP P+ + P T R++RP GG P RP P Sbjct: 507 RLPSPTAAPQQSASQATPVTQGQGRQSRPVAGGPGAPPAARPPASP 552
>DPOL_TUHV2 (Q9YUS2) DNA polymerase (EC 2.7.7.7)| Length = 1171 Score = 29.3 bits (64), Expect = 5.3 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Frame = +2 Query: 146 PAALPPVGPHRRSPVGPPYWSPHRR-SGLTAGRQSGLPAVPPTAGRASLLVAGRRAAL 316 PAA P H G + +P R +G+ A G A PP G S G RAA+ Sbjct: 663 PAAGPSGAAHAGGVPGATFRTPFRTPAGVPAAAAGGAGAGPPGGGAVSSASVGGRAAV 720
>ARX_HUMAN (Q96QS3) Homeobox protein ARX (Aristaless-related homeobox)| Length = 562 Score = 29.3 bits (64), Expect = 5.3 Identities = 32/120 (26%), Positives = 44/120 (36%), Gaps = 12/120 (10%) Frame = +2 Query: 101 RHSHWCARH-VGRVGHPAALPPVGPHRRSPVGPPY-----WSPHRRS------GLTAGRQ 244 R + W R G HP LP GP + PY + PH + A Sbjct: 379 RRAKWRKREKAGAQTHPPGLPFPGPLSATHPLSPYLDASPFPPHHPALDSAWTAAAAAAA 438 Query: 245 SGLPAVPPTAGRASLLVAGRRAALQDRGRGCGLSILRSQPLFTVDSIGDLEELLISHTDA 424 + P++PP G ASL +G L G ++ R P F + G L + T A Sbjct: 439 AAFPSLPPPPGSASLPPSGAPLGL---STFLGAAVFR-HPAFISPAFGRLFSTMAPLTSA 494
>ICP4_HHV11 (P08392) Trans-acting transcriptional protein ICP4 (Transcriptional| activator IE175) (Alpha-4 protein) Length = 1298 Score = 29.3 bits (64), Expect = 5.3 Identities = 18/53 (33%), Positives = 20/53 (37%), Gaps = 5/53 (9%) Frame = -3 Query: 363 GCDLRMESPQPRPRSCKAARRPATSREARPAVGGTAGRP-----DWRPAVRPD 220 G D R P P P S PA ++ A P RP RPA PD Sbjct: 757 GSDARAPLPAPAPPSTPPGPEPAPAQPAAPRAAAAQARPRPVAVSRRPAEGPD 809
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 29.3 bits (64), Expect = 5.3 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 9/53 (16%) Frame = +2 Query: 137 VGHPAALPPVGPHRRSPVGPP--YWSP-------HRRSGLTAGRQSGLPAVPP 268 +GHP +PP G P+ PP Y P ++R L R + P VPP Sbjct: 362 MGHPGPMPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRGPLPPPRPTPRPPVPP 414
>PAT_STRVR (Q57146) Phosphinothricin N-acetyltransferase (EC 2.3.1.-) (PPT| N-acetyltransferase) (Phosphinothricin-resistance protein) Length = 183 Score = 28.9 bits (63), Expect = 6.9 Identities = 14/38 (36%), Positives = 17/38 (44%) Frame = -3 Query: 141 PTLPTCRAHQ*LCRPVRATAAAGKVTSGGWEARGDWRR 28 P P+ R H+ L R T A GGW G W+R Sbjct: 129 PNDPSVRLHEALGYTARGTLRAAGYKHGGWHDVGFWQR 166
>PDLI2_HUMAN (Q96JY6) PDZ and LIM domain protein 2 (PDZ-LIM protein mystique)| (PDZ-LIM protein) Length = 352 Score = 28.9 bits (63), Expect = 6.9 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 9/58 (15%) Frame = +1 Query: 97 RSTQSLVCAT--------CWEGRPSGRSTA-GRASPTIAGRASLLVAPPPVGPHRRSP 243 RS QSL C+ + GRP R GRA G +++LV PP GP P Sbjct: 153 RSFQSLACSPGLPAADRLSYSGRPGSRQAGLGRA-----GDSAVLVLPPSPGPRSSRP 205
>SYN1_RAT (P09951) Synapsin-1 (Synapsin I)| Length = 704 Score = 28.9 bits (63), Expect = 6.9 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 3/46 (6%) Frame = -3 Query: 351 RMESPQPRPRSCKAARRPATS---REARPAVGGTAGRPDWRPAVRP 223 R+ SP P+ + P T R++RP GG P RP P Sbjct: 505 RLPSPTAAPQQSASQATPMTQGQGRQSRPVAGGPGAPPAARPPASP 550
>MMP9_CANFA (O18733) Matrix metalloproteinase-9 precursor (EC 3.4.24.35)| (MMP-9) (92 kDa type IV collagenase) (92 kDa gelatinase) (Gelatinase B) (GELB) Length = 704 Score = 28.9 bits (63), Expect = 6.9 Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 2/46 (4%) Frame = +2 Query: 146 PAALPPVGPHRRSPVGPPYWSPHRR--SGLTAGRQSGLPAVPPTAG 277 P PP P GPP P R +G T +G P PPTAG Sbjct: 453 PPTAPPTAPPTVCATGPPTTRPSERPTAGPTGPPAAG-PTGPPTAG 497
>SCPA1_STRPY (P15926) C5a peptidase precursor (EC 3.4.21.-) (SCP)| Length = 1167 Score = 28.9 bits (63), Expect = 6.9 Identities = 11/43 (25%), Positives = 22/43 (51%) Frame = -3 Query: 345 ESPQPRPRSCKAARRPATSREARPAVGGTAGRPDWRPAVRPDR 217 + P+ +P + + P EA+P G+ PD +P +P++ Sbjct: 1046 KKPEAKPEQDGSDQAPDKKPEAKPEQDGSGQTPDKKPETKPEK 1088
>IE18_PRVKA (P33479) Immediate-early protein IE180| Length = 1446 Score = 28.9 bits (63), Expect = 6.9 Identities = 20/53 (37%), Positives = 24/53 (45%) Frame = -3 Query: 372 VNSGCDLRMESPQPRPRSCKAARRPATSREARPAVGGTAGRPDWRPAVRPDRR 214 V G L P P P + AA RP+ S + A A P+ PA RP RR Sbjct: 405 VRPGAPLARAGPPPSPPAPAAAPRPSASSASSSAAASPAPAPE--PA-RPPRR 454
>SYW_MOUSE (P32921) Tryptophanyl-tRNA synthetase (EC 6.1.1.2)| (Tryptophan--tRNA ligase) (TrpRS) Length = 481 Score = 28.9 bits (63), Expect = 6.9 Identities = 12/34 (35%), Positives = 22/34 (64%) Frame = +3 Query: 162 RSGLTDDRRSGLPTGRPTAGRASPPVASRASQLF 263 ++ + ++ ++G P G PTAGR A++AS+ F Sbjct: 55 KAAMGEEYKAGCPPGNPTAGRNCDSDATKASEDF 88
>NID2_HUMAN (Q14112) Nidogen-2 precursor (NID-2) (Osteonidogen)| Length = 1375 Score = 28.9 bits (63), Expect = 6.9 Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 1/45 (2%) Frame = +1 Query: 127 CWEGRPSGRSTAG-RASPTIAGRASLLVAPPPVGPHRRSPVGPPS 258 CW GR G R+ P VAPP V P R V PPS Sbjct: 1061 CWCVDKDGREVQGTRSQPGTTPACIPTVAPPMVRPTPRPDVTPPS 1105
>FOXGA_HUMAN (P55316) Forkhead box protein G1A (Forkhead-related protein FKHL2)| (Transcription factor BF-2) (Brain factor 2) (BF2) (HFK2) Length = 469 Score = 28.5 bits (62), Expect = 9.1 Identities = 24/81 (29%), Positives = 32/81 (39%) Frame = +2 Query: 101 RHSHWCARHVGRVGHPAALPPVGPHRRSPVGPPYWSPHRRSGLTAGRQSGLPAVPPTAGR 280 +H H H PA PP P ++ P PP R G R+ G P+ +A Sbjct: 46 QHHHHHHHHHHHPPPPAPQPPPPPQQQQPPPPP------RRGARRRRRRG-PSSCCSAAH 98 Query: 281 ASLLVAGRRAALQDRGRGCGL 343 A G+R Q RG G+ Sbjct: 99 AHGAPEGQRQLAQGDRRGRGI 119
>APRR2_ARATH (Q6LA43) Two-component response regulator-like APRR2| (Pseudo-response regulator 2) (TOC2 protein) Length = 535 Score = 28.5 bits (62), Expect = 9.1 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%) Frame = +2 Query: 146 PAALPPVGPHRRSPVG-PPYWSPHRRSGLTAGRQSGLPAVPPTAG 277 P A+PP+ P +G PP W +G G P PP G Sbjct: 402 PGAIPPLWPPPLQSIGQPPPWHWKPPYPTVSGNAWGCPVGPPVTG 446
>PRPC_HUMAN (P02810) Salivary acidic proline-rich phosphoprotein 1/2 precursor| (PRP-1/PRP-2) (Parotid proline-rich protein 1/2) (Pr1/Pr2) (Protein C) (Parotid acidic protein) (Pa) (Parotid isoelectric focusing variant protein) (PIF-S) (Parotid double-band Length = 166 Score = 28.5 bits (62), Expect = 9.1 Identities = 16/43 (37%), Positives = 17/43 (39%) Frame = +2 Query: 140 GHPAALPPVGPHRRSPVGPPYWSPHRRSGLTAGRQSGLPAVPP 268 G P P G H R P G P P + G Q G P PP Sbjct: 106 GRPQGPPQQGGHPRPPRGRPQGPPQQ-----GGHQQGPPPPPP 143
>NFAC1_HUMAN (O95644) Nuclear factor of activated T-cells, cytoplasmic 1 (NFAT| transcription complex cytosolic component) (NF-ATc1) (NF-ATc) Length = 943 Score = 28.5 bits (62), Expect = 9.1 Identities = 22/62 (35%), Positives = 25/62 (40%) Frame = +1 Query: 82 RRRPHRSTQSLVCATCWEGRPSGRSTAGRASPTIAGRASLLVAPPPVGPHRRSPVGPPSC 261 R P S ++ V W G S R ASP + SL PP PH SP P Sbjct: 235 RHSPSTSPRASVTEESWLGARSSRP----ASPCNKRKYSLNGRQPPYSPH-HSPTPSPHG 289 Query: 262 SP 267 SP Sbjct: 290 SP 291
>STAR_DROME (P42519) Protein Star| Length = 597 Score = 28.5 bits (62), Expect = 9.1 Identities = 12/22 (54%), Positives = 15/22 (68%) Frame = +1 Query: 163 GRASPTIAGRASLLVAPPPVGP 228 G+ASP +A AS+ V PPP P Sbjct: 345 GKASPKVAAAASVGVGPPPNSP 366
>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa DNA-pairing protein) (hPOMp Length = 707 Score = 28.5 bits (62), Expect = 9.1 Identities = 18/64 (28%), Positives = 23/64 (35%) Frame = +1 Query: 64 GDLPGCRRRPHRSTQSLVCATCWEGRPSGRSTAGRASPTIAGRASLLVAPPPVGPHRRSP 243 G PG P S+ + G P G +P A ++ APPP P P Sbjct: 116 GPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVP 175 Query: 244 VGPP 255 PP Sbjct: 176 TTPP 179
>PI5PA_MOUSE (P59644) Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (EC| 3.1.3.56) Length = 1003 Score = 28.5 bits (62), Expect = 9.1 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Frame = +1 Query: 145 SGRSTAGRASPTIA-GRASLLVAPPPVGPHRRSPVGPPSCSPH 270 SG + G SPT G S PPP+ RSP PS SP+ Sbjct: 316 SGTRSPGLLSPTFRPGIPSSQTVPPPLRKPPRSPSRSPSRSPN 358
>PDLI2_MACFA (Q9GKU1) PDZ and LIM domain protein 2| Length = 352 Score = 28.5 bits (62), Expect = 9.1 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 7/56 (12%) Frame = +1 Query: 97 RSTQSLVCATCWEGRP-------SGRSTAGRASPTIAGRASLLVAPPPVGPHRRSP 243 RS QSL C+ G P SGR + +A AG +++LV PP GP P Sbjct: 153 RSFQSLACSP---GLPAADRLSYSGRPGSQQAGLGRAGDSAVLVLPPSPGPRSSRP 205
>IF2_MYCLE (Q9Z5I9) Translation initiation factor IF-2| Length = 924 Score = 28.5 bits (62), Expect = 9.1 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 6/50 (12%) Frame = +2 Query: 134 RVGHPAALPPV----GPH--RRSPVGPPYWSPHRRSGLTAGRQSGLPAVP 265 +V H AA+ P+ GP R + PP P + G+ Q G PA P Sbjct: 102 QVDHSAAVVPIVAGEGPSTAHREELAPPAGQPSEQPGVPLPGQQGTPAAP 151
>NCKX1_BOVIN (Q28139) Sodium/potassium/calcium exchanger 1| (Na(+)/K(+)/Ca(2+)-exchange protein 1) (Retinal rod Na-Ca+K exchanger) Length = 1216 Score = 28.5 bits (62), Expect = 9.1 Identities = 14/26 (53%), Positives = 16/26 (61%) Frame = +1 Query: 166 RASPTIAGRASLLVAPPPVGPHRRSP 243 RA+PTI R L+V P PV P SP Sbjct: 384 RANPTIQVRHCLVVEPAPVAPTAPSP 409
>MMP9_BOVIN (P52176) Matrix metalloproteinase-9 precursor (EC 3.4.24.35)| (MMP-9) (92 kDa type IV collagenase) (92 kDa gelatinase) (Gelatinase B) (GELB) Length = 712 Score = 28.5 bits (62), Expect = 9.1 Identities = 20/66 (30%), Positives = 24/66 (36%) Frame = +1 Query: 70 LPGCRRRPHRSTQSLVCATCWEGRPSGRSTAGRASPTIAGRASLLVAPPPVGPHRRSPVG 249 L G R P + T E +P+ T P A R S P GP P G Sbjct: 442 LYGPRPEPEPRPPTTTTTTTTEPQPTAPPTVCVTGPPTA-RPSEGPTTGPTGPPAAGPTG 500 Query: 250 PPSCSP 267 PP+ P Sbjct: 501 PPTAGP 506
>RAD5_USTMA (Q4PGG5) DNA repair protein RAD5 (EC 3.6.1.-)| Length = 1387 Score = 28.5 bits (62), Expect = 9.1 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Frame = +1 Query: 64 GDLPGCRRRPHRSTQSLVCATCWEGRPSGRSTAGRASPT-IAGRASLLVAPPPV 222 G P CR+ P + T + RP+ R+ +G ASPT G+A L + P V Sbjct: 1148 GACPTCRKGPVQETDLIEAIRT---RPATRAASGGASPTDRPGKACTLTSVPSV 1198 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,938,883 Number of Sequences: 219361 Number of extensions: 1223662 Number of successful extensions: 6662 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 5385 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6544 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)