ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast75g11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_469544.1| Oryza sativa (japonica cultivar-group), mRNA Length = 717 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 231 ccgccggtcgccagtcgggcct 252 |||||||||||||||||||||| Sbjct: 72 ccgccggtcgccagtcgggcct 51
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 231 ccgccggtcgccagtcgggcct 252 |||||||||||||||||||||| Sbjct: 28622752 ccgccggtcgccagtcgggcct 28622773 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 435 aggaaaggaagcagattgcttggg 458 ||||||||||| |||||||||||| Sbjct: 27991447 aggaaaggaagtagattgcttggg 27991470
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 231 ccgccggtcgccagtcgggcct 252 |||||||||||||||||||||| Sbjct: 28714076 ccgccggtcgccagtcgggcct 28714097 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 435 aggaaaggaagcagattgcttggg 458 ||||||||||| |||||||||||| Sbjct: 28082771 aggaaaggaagtagattgcttggg 28082794
>gb|AC090882.10| Oryza sativa chromosome 3 BAC OSJNBa0014G15 genomic sequence, complete sequence Length = 158839 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 231 ccgccggtcgccagtcgggcct 252 |||||||||||||||||||||| Sbjct: 76144 ccgccggtcgccagtcgggcct 76123
>emb|AJ868284.1| Uncultured bacterium partial pmoA gene for particulate methane monooxygenase alpha subunit, isolate DGGE-band AC-A3 Length = 463 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 61 gctggtgaccttcccggctgccgcc 85 |||||||||||||||||| |||||| Sbjct: 37 gctggtgaccttcccggcggccgcc 61
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 26 cgccgccgccagtcgccgcga 46 ||||||||||||||||||||| Sbjct: 142041 cgccgccgccagtcgccgcga 142061
>gb|AF285634.1|AF285634 Burkholderia thailandensis capsule gene cluster, partial sequence Length = 7873 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 gggcctcaccgacgatcgccg 187 ||||||||||||||||||||| Sbjct: 3103 gggcctcaccgacgatcgccg 3083
>gb|AC138969.2| Homo sapiens chromosome 16 clone RP11-958N24, complete sequence Length = 216759 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 20 ccccaccgccgccgccagtcgccgc 44 |||||||||||||||||| |||||| Sbjct: 156849 ccccaccgccgccgccagccgccgc 156873
>gb|AC136624.3| Homo sapiens chromosome 16 clone RP11-517A5, complete sequence Length = 211896 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 20 ccccaccgccgccgccagtcgccgc 44 |||||||||||||||||| |||||| Sbjct: 70699 ccccaccgccgccgccagccgccgc 70723
>gb|AC130465.2| Homo sapiens chromosome 16 clone CTA-962B4, complete sequence Length = 173911 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 20 ccccaccgccgccgccagtcgccgc 44 |||||||||||||||||| |||||| Sbjct: 112831 ccccaccgccgccgccagccgccgc 112807
>gb|U91318.1|HUU91318 Human chromosome 16 BAC clone CIT987SK-A-962B4, complete sequence Length = 172984 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 20 ccccaccgccgccgccagtcgccgc 44 |||||||||||||||||| |||||| Sbjct: 111903 ccccaccgccgccgccagccgccgc 111879
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 gggcctcaccgacgatcgccg 187 ||||||||||||||||||||| Sbjct: 1488338 gggcctcaccgacgatcgccg 1488318
>emb|AJ430788.1|UBA430788 Uncultured bacterium partial pmoA gene for particulate methane monooxygenase, clone Beiyuan 2 Length = 490 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 61 gctggtgaccttcccggctgccgcc 85 |||||||||||||||||| |||||| Sbjct: 48 gctggtgaccttcccggcggccgcc 72
>emb|AJ430816.1|UBA430816 Uncultured bacterium partial pmoA gene for particulate methane monooxygenase, clone Zhenjiang 5 Length = 490 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 61 gctggtgaccttcccggctgccgcc 85 |||||||||||||||||| |||||| Sbjct: 48 gctggtgaccttcccggccgccgcc 72
>gb|DQ214735.1| Taeniopygia guttata clone 0061P0017H07 EBNA1 binding protein 2 variant 5-like mRNA, complete sequence Length = 1360 Score = 40.1 bits (20), Expect = 6.3 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 22 ccaccgccgccgccagtcgccgcgagcc 49 ||||||||||||||| |||||||||||| Sbjct: 27 ccaccgccgccgcca-tcgccgcgagcc 1
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 gccggtcgccgcgccgcctt 315 |||||||||||||||||||| Sbjct: 3323011 gccggtcgccgcgccgcctt 3323030
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 gtcgccggtcgccgcgccgc 312 |||||||||||||||||||| Sbjct: 3059993 gtcgccggtcgccgcgccgc 3059974
>ref|NM_190027.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1218 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 ccgccgccgccagtcgccgc 44 |||||||||||||||||||| Sbjct: 308 ccgccgccgccagtcgccgc 289
>gb|AC069324.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0071K19, complete sequence Length = 174752 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 ctgctggtcgccggtcgccg 306 |||||||||||||||||||| Sbjct: 130441 ctgctggtcgccggtcgccg 130422
>gb|AF277728.1| Uncultured putative methanotroph pmoA-RC1 particulate methane monooxygenase protein A (pmoA) gene, partial cds Length = 492 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 61 gctggtgaccttcccggctgccgc 84 |||||||||||||||||| ||||| Sbjct: 45 gctggtgaccttcccggcggccgc 68
>gb|AC133334.8| Oryza sativa chromosome 3 BAC OSJNBa0004L11 genomic sequence, complete sequence Length = 133889 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 435 aggaaaggaagcagattgcttggg 458 ||||||||||| |||||||||||| Sbjct: 33579 aggaaaggaagtagattgcttggg 33556
>emb|AJ868285.1| Uncultured bacterium partial pmoA gene for particulate methane monooxygenase alpha subunit, isolate DGGE-band SK-B Length = 474 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 61 gctggtgaccttcccggctgccgc 84 |||||||||||||||||| ||||| Sbjct: 48 gctggtgaccttcccggcggccgc 71
>ref|XM_760334.1| Theileria parva strain Muguga hypothetical protein (TP02_0859) partial mRNA Length = 1671 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 426 agaggaactaggaaaggaag 445 |||||||||||||||||||| Sbjct: 681 agaggaactaggaaaggaag 700
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 ctgctggtcgccggtcgccg 306 |||||||||||||||||||| Sbjct: 365383 ctgctggtcgccggtcgccg 365364
>emb|BX572603.1| Rhodopseudomonas palustris CGA009 complete genome; segment 11/16 Length = 349635 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 tgccgccgtcgccctcaccg 98 |||||||||||||||||||| Sbjct: 228767 tgccgccgtcgccctcaccg 228786
>emb|BX294140.1| Pirellula sp. strain 1 complete genome; segment 8/24 Length = 307050 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 gttccccccaccgccggtcg 279 |||||||||||||||||||| Sbjct: 22386 gttccccccaccgccggtcg 22405
>emb|AL731643.4|OSJN00284 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085C10, complete sequence Length = 202924 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 cggtcgccgcgccgccttgc 317 |||||||||||||||||||| Sbjct: 143008 cggtcgccgcgccgccttgc 143027 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 cggtcgccgcgccgccttgc 317 |||||||||||||||||||| Sbjct: 138384 cggtcgccgcgccgccttgc 138403
>emb|AL773532.5| Mouse DNA sequence from clone RP23-48F16 on chromosome 11, complete sequence Length = 72745 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 423 catagaggaactaggaaagg 442 |||||||||||||||||||| Sbjct: 38033 catagaggaactaggaaagg 38052
>dbj|AK134022.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched library, clone:5830408L17 product:nuclear factor of activated T-cells 5, full insert sequence Length = 2360 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 75 cggctgccgccgtcgccctcaccg 98 ||||||||||| |||||||||||| Sbjct: 237 cggctgccgccctcgccctcaccg 260
>gb|AF436851.1|AF436851 Cucumis melo RING-H2 zinc finger protein mRNA, partial cds Length = 511 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 ccccaccgccgccgccagtc 39 |||||||||||||||||||| Sbjct: 17 ccccaccgccgccgccagtc 36
>dbj|AK164250.1| Mus musculus 9 days embryo whole body cDNA, RIKEN full-length enriched library, clone:D030041C22 product:hypothetical protein, full insert sequence Length = 1236 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 cctgctggtcgccggtcgcc 305 |||||||||||||||||||| Sbjct: 38 cctgctggtcgccggtcgcc 19
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 gcctccctgctggtcgccgg 300 |||||||||||||||||||| Sbjct: 2093069 gcctccctgctggtcgccgg 2093050
>gb|AC154361.2| Mus musculus BAC clone RP23-170I24 from chromosome 14, complete sequence Length = 202760 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 cctgctggtcgccggtcgcc 305 |||||||||||||||||||| Sbjct: 116720 cctgctggtcgccggtcgcc 116739
>dbj|AK090167.1| Mus musculus 13 days embryo spinal cord cDNA, RIKEN full-length enriched library, clone:G630009F03 product:hypothetical protein, full insert sequence Length = 2939 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 cctgctggtcgccggtcgcc 305 |||||||||||||||||||| Sbjct: 207 cctgctggtcgccggtcgcc 188
>dbj|AK082951.1| Mus musculus 12 days embryo spinal cord cDNA, RIKEN full-length enriched library, clone:C530020I04 product:paraspeckle protein 1, full insert sequence Length = 1072 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 cctgctggtcgccggtcgcc 305 |||||||||||||||||||| Sbjct: 622 cctgctggtcgccggtcgcc 641
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 cggtcgccgcgccgccttgc 317 |||||||||||||||||||| Sbjct: 7755594 cggtcgccgcgccgccttgc 7755613 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 cggtcgccgcgccgccttgc 317 |||||||||||||||||||| Sbjct: 7750970 cggtcgccgcgccgccttgc 7750989
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 ctgctggtcgccggtcgccg 306 |||||||||||||||||||| Sbjct: 365383 ctgctggtcgccggtcgccg 365364
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 ccgccgccgccagtcgccgc 44 |||||||||||||||||||| Sbjct: 40886522 ccgccgccgccagtcgccgc 40886541 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 tcgccggtcgccgcgccgcc 313 |||||||||||||||||||| Sbjct: 2500429 tcgccggtcgccgcgccgcc 2500410
>gb|AC139766.15| Homo sapiens 3 BAC RP11-688P9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 187748 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 436 ggaaaggaagcagattgctt 455 |||||||||||||||||||| Sbjct: 101393 ggaaaggaagcagattgctt 101374
>dbj|AP003272.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0506E04 Length = 139934 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 ccgccgccgccagtcgccgc 44 |||||||||||||||||||| Sbjct: 98628 ccgccgccgccagtcgccgc 98647
>dbj|AP003246.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0423A12 Length = 178649 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 ccgccgccgccagtcgccgc 44 |||||||||||||||||||| Sbjct: 14947 ccgccgccgccagtcgccgc 14966
>dbj|AP002872.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0416D03 Length = 157112 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 tcgccggtcgccgcgccgcc 313 |||||||||||||||||||| Sbjct: 54850 tcgccggtcgccgcgccgcc 54831
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 tgccgccgtcgccctcaccg 98 |||||||||||||||||||| Sbjct: 1672898 tgccgccgtcgccctcaccg 1672879
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 ctgctggtcgccggtcgccg 306 |||||||||||||||||||| Sbjct: 365380 ctgctggtcgccggtcgccg 365361 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,288,913 Number of Sequences: 3902068 Number of extensions: 3288913 Number of successful extensions: 77438 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 76250 Number of HSP's gapped (non-prelim): 1189 length of query: 470 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 448 effective length of database: 17,147,199,772 effective search space: 7681945497856 effective search space used: 7681945497856 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
