ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast75g05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT008984.1| Triticum aestivum clone wdk2c.pk007.b15:fis, full insert mRNA sequence Length = 2056 Score = 613 bits (309), Expect = e-172 Identities = 410/445 (92%), Gaps = 14/445 (3%) Strand = Plus / Plus Query: 30 atccattctgccttgaggaaattgtctgaacctttcctccacttactagtcttt-----c 84 ||||||| ||||||| |||||||| ||||||||||||||||||||||| |||| | Sbjct: 8 atccattttgccttggagaaattgtttgaacctttcctccacttactagcctttttcttc 67 Query: 85 ttcctccccattgctgccatgagggcgcccgtggcgttctttgcatggtgcgccctcctc 144 |||||||||||||||||||||||||| | ||||||||||||||||||||||| Sbjct: 68 ttcctccccattgctgccatgagggctc---------tctttgcatggtgcgccctcctc 118 Query: 145 ttggcgtgtggcggcctgctgcattgcgcggaggcggccaaggccaggcacctcaagtgg 204 |||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct: 119 ttggcgtgcggcggcgtgatgcattgcgcggaggcggccaaggccaggcacctcaagtgg 178 Query: 205 gaggtgagccacatgttctggtcgccggactgcgaggagaaggtgctcatcggcatcaac 264 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 179 gaggtgagccacatgttctggtcgccggactgcgaggagaaggtgctcatcggcatcaac 238 Query: 265 ggccagttccccggccccaccatccgggccaaggccggcgacaccatcgtcgtcgagctc 324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 239 ggccagttccccggccccaccatccgggccaaggccggcgacaccatcgtcgtcgagctc 298 Query: 325 aagaacgggctgcacaccgagggggtggtcatccactggcacggcgtcagacagattgga 384 ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct: 299 aagaacgggctgcacaccgagggcgtcgtcatccactggcacggcgtcagacagattgga 358 Query: 385 acaccgtgggcggatggcacggcggcgatctcccaatgcgccatcaaccccgaggaaacc 444 || || |||||||| |||||||| || |||||||| |||||||||||||| || |||||| Sbjct: 359 acgccatgggcggacggcacggccgccatctcccagtgcgccatcaacccggaagaaacc 418 Query: 445 ttcacttaccgatttgtcgtcgaca 469 |||||||| ||||| |||||||||| Sbjct: 419 ttcacttatcgattcgtcgtcgaca 443
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 274 bits (138), Expect = 2e-70 Identities = 192/210 (91%) Strand = Plus / Plus Query: 169 tgcgcggaggcggccaaggccaggcacctcaagtgggaggtgagccacatgttctggtcg 228 ||||||| |||||| ||||| |||||| ||| ||||||||||||| |||||||||||||| Sbjct: 21545604 tgcgcggcggcggcgaaggcgaggcacttcaggtgggaggtgagcaacatgttctggtcg 21545663 Query: 229 ccggactgcgaggagaaggtgctcatcggcatcaacggccagttccccggccccaccatc 288 ||||||||||||||||||||| | ||||||||||| |||||||||||||| || |||||| Sbjct: 21545664 ccggactgcgaggagaaggtggtgatcggcatcaatggccagttccccgggccgaccatc 21545723 Query: 289 cgggccaaggccggcgacaccatcgtcgtcgagctcaagaacgggctgcacaccgagggg 348 || ||||||||||||||||||||||||||| | ||||||||||| |||||||||||||| Sbjct: 21545724 cgcgccaaggccggcgacaccatcgtcgtccacctcaagaacggcctgcacaccgagggc 21545783 Query: 349 gtggtcatccactggcacggcgtcagacag 378 || |||||||||||||||||| |||||||| Sbjct: 21545784 gtcgtcatccactggcacggcatcagacag 21545813 Score = 87.7 bits (44), Expect = 3e-14 Identities = 68/76 (89%) Strand = Plus / Plus Query: 374 gacagattggaacaccgtgggcggatggcacggcggcgatctcccaatgcgccatcaacc 433 ||||||| || ||||| ||||||||||||||||| |||||||||| ||||||||||||| Sbjct: 21546070 gacagatcgggacaccatgggcggatggcacggcatcgatctcccagtgcgccatcaacc 21546129 Query: 434 ccgaggaaaccttcac 449 | || ||||||||||| Sbjct: 21546130 ctgaagaaaccttcac 21546145 Score = 63.9 bits (32), Expect = 4e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 335 tgcacaccgagggggtggtcatccactggcacggcgtcagacag 378 ||||||||||||| || |||||||||||||||||| |||||||| Sbjct: 21603707 tgcacaccgagggcgtcgtcatccactggcacggcatcagacag 21603750 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 59 acctttcctccacttactagtcttt 83 ||||||||||||||||||| ||||| Sbjct: 21545447 acctttcctccacttactactcttt 21545471
>dbj|AP005458.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0567G03 Length = 196834 Score = 274 bits (138), Expect = 2e-70 Identities = 192/210 (91%) Strand = Plus / Plus Query: 169 tgcgcggaggcggccaaggccaggcacctcaagtgggaggtgagccacatgttctggtcg 228 ||||||| |||||| ||||| |||||| ||| ||||||||||||| |||||||||||||| Sbjct: 102788 tgcgcggcggcggcgaaggcgaggcacttcaggtgggaggtgagcaacatgttctggtcg 102847 Query: 229 ccggactgcgaggagaaggtgctcatcggcatcaacggccagttccccggccccaccatc 288 ||||||||||||||||||||| | ||||||||||| |||||||||||||| || |||||| Sbjct: 102848 ccggactgcgaggagaaggtggtgatcggcatcaatggccagttccccgggccgaccatc 102907 Query: 289 cgggccaaggccggcgacaccatcgtcgtcgagctcaagaacgggctgcacaccgagggg 348 || ||||||||||||||||||||||||||| | ||||||||||| |||||||||||||| Sbjct: 102908 cgcgccaaggccggcgacaccatcgtcgtccacctcaagaacggcctgcacaccgagggc 102967 Query: 349 gtggtcatccactggcacggcgtcagacag 378 || |||||||||||||||||| |||||||| Sbjct: 102968 gtcgtcatccactggcacggcatcagacag 102997 Score = 87.7 bits (44), Expect = 3e-14 Identities = 68/76 (89%) Strand = Plus / Plus Query: 374 gacagattggaacaccgtgggcggatggcacggcggcgatctcccaatgcgccatcaacc 433 ||||||| || ||||| ||||||||||||||||| |||||||||| ||||||||||||| Sbjct: 103254 gacagatcgggacaccatgggcggatggcacggcatcgatctcccagtgcgccatcaacc 103313 Query: 434 ccgaggaaaccttcac 449 | || ||||||||||| Sbjct: 103314 ctgaagaaaccttcac 103329 Score = 63.9 bits (32), Expect = 4e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 335 tgcacaccgagggggtggtcatccactggcacggcgtcagacag 378 ||||||||||||| || |||||||||||||||||| |||||||| Sbjct: 160891 tgcacaccgagggcgtcgtcatccactggcacggcatcagacag 160934 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 59 acctttcctccacttactagtcttt 83 ||||||||||||||||||| ||||| Sbjct: 102631 acctttcctccacttactactcttt 102655
>dbj|AK105605.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-A11, full insert sequence Length = 2191 Score = 85.7 bits (43), Expect = 1e-13 Identities = 79/91 (86%) Strand = Plus / Plus Query: 335 tgcacaccgagggggtggtcatccactggcacggcgtcagacagattggaacaccgtggg 394 ||||||||||||| || |||||||||||||||||| |||||||| |||| || ||||||| Sbjct: 327 tgcacaccgagggcgtcgtcatccactggcacggcatcagacagtttggcacgccgtggg 386 Query: 395 cggatggcacggcggcgatctcccaatgcgc 425 |||| || ||||| |||| ||||| ||||| Sbjct: 387 cggacgggacggcatcgatatcccagtgcgc 417
>dbj|AB004799.1| Oryza sativa mRNA for ascorbate oxidase, partial cds Length = 1245 Score = 79.8 bits (40), Expect = 7e-12 Identities = 78/91 (85%) Strand = Plus / Plus Query: 335 tgcacaccgagggggtggtcatccactggcacggcgtcagacagattggaacaccgtggg 394 ||||||||||||| || ||||||||||||||||| |||||||| |||| || ||||||| Sbjct: 266 tgcacaccgagggcgtcgtcatccactggcacggnatcagacagtttggtacgccgtggg 325 Query: 395 cggatggcacggcggcgatctcccaatgcgc 425 |||| || ||||| |||| ||||| ||||| Sbjct: 326 cggacgggacggcatcgatatcccagtgcgc 356
>dbj|AP005471.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0062E01 Length = 161804 Score = 63.9 bits (32), Expect = 4e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 335 tgcacaccgagggggtggtcatccactggcacggcgtcagacag 378 ||||||||||||| || |||||||||||||||||| |||||||| Sbjct: 2638 tgcacaccgagggcgtcgtcatccactggcacggcatcagacag 2681
>ref|XM_450643.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1731 Score = 50.1 bits (25), Expect = 0.007 Identities = 46/53 (86%) Strand = Plus / Plus Query: 354 catccactggcacggcgtcagacagattggaacaccgtgggcggatggcacgg 406 |||||||||||||||| || | ||||| || || ||||||||||| ||||||| Sbjct: 240 catccactggcacggcatccggcagatcggcacgccgtgggcggacggcacgg 292
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 50.1 bits (25), Expect = 0.007 Identities = 46/53 (86%) Strand = Plus / Minus Query: 354 catccactggcacggcgtcagacagattggaacaccgtgggcggatggcacgg 406 |||||||||||||||| || | ||||| || || ||||||||||| ||||||| Sbjct: 11981068 catccactggcacggcatccggcagatcggcacgccgtgggcggacggcacgg 11981016 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 298 gccggcgacaccatcgtcgtcg 319 |||||||||||||||||||||| Sbjct: 22000386 gccggcgacaccatcgtcgtcg 22000407
>dbj|AP005422.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0441A12 Length = 185437 Score = 50.1 bits (25), Expect = 0.007 Identities = 46/53 (86%) Strand = Plus / Minus Query: 354 catccactggcacggcgtcagacagattggaacaccgtgggcggatggcacgg 406 |||||||||||||||| || | ||||| || || ||||||||||| ||||||| Sbjct: 85548 catccactggcacggcatccggcagatcggcacgccgtgggcggacggcacgg 85496
>dbj|D43624.1|TOBTAOP Tobacco mRNA for ascorbate oxidase precursor, complete cds Length = 2065 Score = 50.1 bits (25), Expect = 0.007 Identities = 52/61 (85%) Strand = Plus / Plus Query: 374 gacagattggaacaccgtgggcggatggcacggcggcgatctcccaatgcgccatcaacc 433 ||||||| |||||||| ||||| ||||| || || || || |||||||||||||| |||| Sbjct: 362 gacagatcggaacaccatgggctgatggaactgcagcaatttcccaatgcgccattaacc 421 Query: 434 c 434 | Sbjct: 422 c 422
>ref|NM_120146.3| Arabidopsis thaliana copper ion binding AT4G39830 mRNA, complete cds Length = 2082 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 304 gacaccatcgtcgtcgagctcaagaa 329 ||||||||||| |||||||||||||| Sbjct: 394 gacaccatcgttgtcgagctcaagaa 419
>gb|BT015885.1| Arabidopsis thaliana At4g39830 gene, complete cds Length = 1749 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 304 gacaccatcgtcgtcgagctcaagaa 329 ||||||||||| |||||||||||||| Sbjct: 220 gacaccatcgttgtcgagctcaagaa 245
>gb|BT015360.1| Arabidopsis thaliana At4g39830 gene, complete cds Length = 1915 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 304 gacaccatcgtcgtcgagctcaagaa 329 ||||||||||| |||||||||||||| Sbjct: 383 gacaccatcgttgtcgagctcaagaa 408
>emb|AL161596.2|ATCHRIV92 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 92 Length = 112067 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 304 gacaccatcgtcgtcgagctcaagaa 329 ||||||||||| |||||||||||||| Sbjct: 6341 gacaccatcgttgtcgagctcaagaa 6366
>emb|AL035708.2|ATT5J17 Arabidopsis thaliana DNA chromosome 4, BAC clone T5J17 (ESSA project) Length = 118267 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 304 gacaccatcgtcgtcgagctcaagaa 329 ||||||||||| |||||||||||||| Sbjct: 16908 gacaccatcgttgtcgagctcaagaa 16933
>emb|AL022605.3|ATT19P19 Arabidopsis thaliana DNA chromosome 4, BAC clone T19P19 (ESSA project) Length = 88343 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 304 gacaccatcgtcgtcgagctcaagaa 329 ||||||||||| |||||||||||||| Sbjct: 82462 gacaccatcgttgtcgagctcaagaa 82487
>gb|AC159331.9| Mus musculus 10 BAC RP23-218E2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 186300 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 68 ccacttactagtctttcttcct 89 |||||||||||||||||||||| Sbjct: 18205 ccacttactagtctttcttcct 18184
>emb|BX827889.1|CNS0A49W Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH31ZH07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1943 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 304 gacaccatcgtcgtcgagctcaagaa 329 ||||||||||| |||||||||||||| Sbjct: 394 gacaccatcgttgtcgagctcaagaa 419
>dbj|AP005396.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0635G10 Length = 146728 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 298 gccggcgacaccatcgtcgtcg 319 |||||||||||||||||||||| Sbjct: 42450 gccggcgacaccatcgtcgtcg 42471
>gb|AC153958.2| Mus musculus 10 BAC RP24-541B4 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 176618 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 68 ccacttactagtctttcttcct 89 |||||||||||||||||||||| Sbjct: 50345 ccacttactagtctttcttcct 50366
>gb|AC090053.5| Leishmania major strain Friedlin chromosome Unknown clone P323, complete sequence Length = 66637 Score = 44.1 bits (22), Expect = 0.41 Identities = 28/30 (93%) Strand = Plus / Plus Query: 287 tccgggccaaggccggcgacaccatcgtcg 316 |||||||||||||||||||| | ||||||| Sbjct: 23383 tccgggccaaggccggcgacgcgatcgtcg 23412
>gb|AY971876.1| Lycopersicon esculentum ascorbate oxidase (AO) mRNA, complete cds Length = 1984 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 373 agacagattggaacaccgtgggcggatgg 401 ||||||||||||||||| ||||| ||||| Sbjct: 352 agacagattggaacaccatgggctgatgg 380
>ref|XM_361698.1| Magnaporthe grisea 70-15 hypothetical protein (MG04172.4) partial mRNA Length = 2406 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 392 gggcggatggcacggcggcga 412 ||||||||||||||||||||| Sbjct: 1320 gggcggatggcacggcggcga 1340
>gb|DQ470894.1| Leptosphaeria maculans isolate AFTOL-ID 277 RNA polymerase II subunit 2 (RPB2) gene, partial sequence Length = 1675 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 303 cgacaccatcgtcgtcgagct 323 ||||||||||||||||||||| Sbjct: 1325 cgacaccatcgtcgtcgagct 1305
>gb|AC015802.21| Homo sapiens chromosome 17, clone RP11-666A8, complete sequence Length = 205753 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 79 tctttcttcctccccattgct 99 ||||||||||||||||||||| Sbjct: 178015 tctttcttcctccccattgct 178035
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 294 caaggccggcgacaccatcgt 314 ||||||||||||||||||||| Sbjct: 2520182 caaggccggcgacaccatcgt 2520162
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 303 cgacaccatcgtcgtcgagctcaag 327 |||||||||||||||| |||||||| Sbjct: 2469684 cgacaccatcgtcgtcaagctcaag 2469660
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 292 gccaaggccggcgacaccatcgtcg 316 |||||||||||||||| |||||||| Sbjct: 4034665 gccaaggccggcgacagcatcgtcg 4034641
>dbj|AB083032.1| Glycine max mRNA for syringolide-induced protein B13-1-1, partial cds Length = 1945 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 354 catccactggcacggcgtcagacagattggaac 386 ||||||||||||||| | |||||||||||||| Sbjct: 240 catccactggcacgggataagacagattggaac 272
>gb|AF107805.1|AF107805 Sporormiella minima DNA-dependent RNA polymerase II RPB140 (RPB2) gene, partial cds Length = 2811 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 303 cgacaccatcgtcgtcgagct 323 ||||||||||||||||||||| Sbjct: 2116 cgacaccatcgtcgtcgagct 2096
>ref|XM_366417.1| Magnaporthe grisea 70-15 hypothetical protein (MG10635.4) partial mRNA Length = 4869 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 108 ggcgcccgtggcgttctttgcatg 131 |||||| ||||||||||||||||| Sbjct: 2717 ggcgccggtggcgttctttgcatg 2694
>emb|AL354979.17| Human DNA sequence from clone RP11-10J18 on chromosome 9, complete sequence Length = 85997 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 cttcctccccattgctgcca 103 |||||||||||||||||||| Sbjct: 26974 cttcctccccattgctgcca 26955
>emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete genome; segment 24/29 Length = 290850 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 ccggcgacaccatcgtcgtc 318 |||||||||||||||||||| Sbjct: 237163 ccggcgacaccatcgtcgtc 237182
>gb|AC009695.7| Homo sapiens chromosome 8, clone RP11-130C12, complete sequence Length = 144328 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 gagaaggtgctcatcggcat 260 |||||||||||||||||||| Sbjct: 48456 gagaaggtgctcatcggcat 48475
>gb|AC112217.2| Homo sapiens chromosome 3 clone CTD-2028L5, complete sequence Length = 156545 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 atccattctgccttgaggaa 49 |||||||||||||||||||| Sbjct: 32682 atccattctgccttgaggaa 32663
>gb|AC099054.2| Homo sapiens chromosome 3 clone RP11-489C3, complete sequence Length = 201564 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 atccattctgccttgaggaa 49 |||||||||||||||||||| Sbjct: 29022 atccattctgccttgaggaa 29041
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 aggccggcgacaccatcgtc 315 |||||||||||||||||||| Sbjct: 5835752 aggccggcgacaccatcgtc 5835771
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 gccggcgacaccatcgtcgt 317 |||||||||||||||||||| Sbjct: 4837900 gccggcgacaccatcgtcgt 4837919
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 caaggccggcgacaccatcg 313 |||||||||||||||||||| Sbjct: 122896 caaggccggcgacaccatcg 122915 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,455,691 Number of Sequences: 3902068 Number of extensions: 3455691 Number of successful extensions: 64430 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63711 Number of HSP's gapped (non-prelim): 718 length of query: 470 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 448 effective length of database: 17,147,199,772 effective search space: 7681945497856 effective search space used: 7681945497856 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
